Ggra9830.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9830.t1
Unique Name	Ggra9830.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	605

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000160_pilon	contig	tig00000160_pilon:121428..123242 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9830	Ggra9830	Gracilaria gracilis GNS1m male	gene	tig00000160_pilon 121428..123242 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9830.t1.stop1	Ggra9830.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000160_pilon 121428..121430 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9830.t1.CDS1	Ggra9830.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000160_pilon 121428..123242 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9830.t1.exon1	Ggra9830.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000160_pilon 121428..123242 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9830.t1.start1	Ggra9830.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000160_pilon 123240..123242 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9830.t1	Ggra9830.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000160_pilon 121428..123242 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000160_pilon:121428..123242-
coding sequence from alignment at tig00000160_pilon:121428..123242-

mRNA sequence

>Ggra9830.t1 ID=Ggra9830.t1|Name=Ggra9830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp
MSYTPPSMDAQSPEMQARFYERAIKRLNDPQAMVNLAELLFSDKHNLLDS
RRAVQLLQRAIKQHSDPTAMNNLALYYLHKGTDAQRLEVIPLLEHSLSIE
EDSIVLRNLSDAVKDVRCGTPDPQTAIQLCERALRFGEDPKCMEALAYNL
LTVPGIKSDSHRAIRLYKKAIQISEDAEAMNRLGVCYVDGTQHLEACSKR
AAKWFERAIKYGDLPEAKCNLAYLLAGEDLPGSRRDPVRAVALLEEACKQ
VRSEVCMRTLAKIYRDVEEVYNLSRAIQLLEASLSEFKSASARVSLLDIF
LGFKKPPPDHAKALQLCEEDYTRTRDVASLRVMSCIMWSGAANVEANPKR
ALELMQQHKKERLPEEVSALRYQSETSEDNQKLIDPLPKIGFYSTKLILA
ILLSESNDKSKLTQAETLFREVLEESDAKVMFAWLPLSLRVCELQLPFHG
NRSQMTYTMKRATHCYEAGLLNLASFLLEVDCEDSKKLEAVHLLEDAMDT
GLRLISMLNLGYVLWKGVGGVPEDRKRAMDLFETSVEETNDACARILLAN
ALADREDCEEEEIERSVRLWKSVEEDYEGDERELSRMKWMISERTKCVWG
SAIM*

spliced messenger RNA

>Ggra9830.t1 ID=Ggra9830.t1|Name=Ggra9830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000160_pilon:121428..123242- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTATACGCCGCCGTCGATGGACGCACAATCACCGGAGATGCAGGC
GCGCTTCTACGAGCGCGCTATCAAGCGACTCAATGACCCCCAAGCAATGG
TCAACCTCGCCGAGCTTCTCTTCTCTGACAAGCACAACCTGCTCGATTCT
CGAAGGGCAGTGCAGCTGCTTCAGCGTGCTATCAAGCAACATAGTGACCC
TACTGCCATGAATAACCTGGCTTTGTACTATTTACACAAAGGAACTGATG
CACAACGACTTGAGGTCATCCCGCTTCTCGAACACTCGCTAAGTATTGAA
GAGGATTCAATCGTGCTTCGAAACCTTTCCGACGCCGTTAAGGACGTGCG
ATGCGGCACGCCAGACCCTCAAACCGCCATTCAACTCTGCGAGCGCGCGC
TCAGGTTCGGTGAAGACCCCAAGTGCATGGAGGCCTTGGCGTATAACCTA
CTCACGGTTCCAGGAATCAAATCCGATAGCCACCGTGCTATTAGATTATA
CAAGAAGGCAATTCAAATTTCGGAAGATGCAGAAGCCATGAACCGCTTGG
GTGTGTGCTATGTGGATGGCACACAACATCTCGAGGCCTGCAGCAAACGC
GCTGCCAAGTGGTTCGAACGCGCCATCAAATATGGAGACTTGCCCGAGGC
AAAGTGTAACCTTGCGTATCTTCTCGCTGGCGAAGATCTTCCAGGGTCAA
GGCGAGATCCAGTACGCGCCGTTGCTCTGCTGGAAGAGGCATGCAAGCAG
GTAAGATCTGAGGTATGTATGCGCACTTTGGCCAAAATATACAGAGACGT
GGAGGAGGTATACAATCTGTCCAGAGCAATACAGCTCTTGGAAGCGTCGC
TCTCAGAATTCAAGTCAGCATCTGCCAGAGTTTCCTTGCTCGATATCTTT
CTTGGTTTCAAGAAACCCCCACCCGATCACGCGAAAGCGCTTCAGCTATG
CGAAGAAGATTATACCAGAACGCGAGATGTGGCTTCACTGCGAGTAATGA
GCTGTATAATGTGGAGCGGTGCTGCAAACGTCGAAGCGAATCCGAAGCGT
GCCTTGGAACTGATGCAACAACATAAGAAAGAAAGGCTTCCAGAAGAGGT
TTCGGCACTTCGATATCAAAGCGAGACATCGGAGGATAATCAGAAGCTAA
TCGACCCTCTACCCAAGATCGGTTTTTACAGCACGAAGTTAATCCTGGCC
ATCCTTCTAAGCGAATCAAACGACAAGTCTAAACTGACACAAGCTGAAAC
TCTTTTTCGTGAGGTTCTGGAAGAATCTGACGCGAAGGTTATGTTTGCGT
GGTTACCTCTGTCACTGCGGGTATGCGAGTTGCAGTTGCCGTTCCATGGC
AACCGGAGTCAAATGACGTACACAATGAAACGTGCAACACACTGCTATGA
GGCTGGCTTGCTGAACCTTGCGAGTTTTCTCCTTGAGGTGGATTGTGAGG
ATTCTAAGAAACTCGAAGCGGTGCATCTACTCGAGGATGCCATGGATACC
GGTCTGAGATTGATTTCCATGCTGAACTTGGGTTACGTGCTTTGGAAGGG
GGTTGGAGGTGTTCCGGAGGATAGAAAGCGGGCAATGGATCTGTTCGAAA
CGAGCGTGGAAGAAACTAACGATGCGTGCGCGCGGATTCTGCTTGCGAAT
GCTCTTGCTGACCGGGAAGATTGTGAAGAGGAGGAGATTGAGAGAAGTGT
GAGGTTGTGGAAGTCTGTGGAAGAGGATTATGAAGGTGATGAACGGGAGC
TGTCGAGGATGAAATGGATGATATCGGAGAGAACAAAATGCGTCTGGGGG
TCTGCCATAATGTGA

protein sequence of Ggra9830.t1

>Ggra9830.t1 ID=Ggra9830.t1|Name=Ggra9830.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=605bp
MSYTPPSMDAQSPEMQARFYERAIKRLNDPQAMVNLAELLFSDKHNLLDS
RRAVQLLQRAIKQHSDPTAMNNLALYYLHKGTDAQRLEVIPLLEHSLSIE
EDSIVLRNLSDAVKDVRCGTPDPQTAIQLCERALRFGEDPKCMEALAYNL
LTVPGIKSDSHRAIRLYKKAIQISEDAEAMNRLGVCYVDGTQHLEACSKR
AAKWFERAIKYGDLPEAKCNLAYLLAGEDLPGSRRDPVRAVALLEEACKQ
VRSEVCMRTLAKIYRDVEEVYNLSRAIQLLEASLSEFKSASARVSLLDIF
LGFKKPPPDHAKALQLCEEDYTRTRDVASLRVMSCIMWSGAANVEANPKR
ALELMQQHKKERLPEEVSALRYQSETSEDNQKLIDPLPKIGFYSTKLILA
ILLSESNDKSKLTQAETLFREVLEESDAKVMFAWLPLSLRVCELQLPFHG
NRSQMTYTMKRATHCYEAGLLNLASFLLEVDCEDSKKLEAVHLLEDAMDT
GLRLISMLNLGYVLWKGVGGVPEDRKRAMDLFETSVEETNDACARILLAN
ALADREDCEEEEIERSVRLWKSVEEDYEGDERELSRMKWMISERTKCVWG
SAIM*

mRNA from alignment at tig00000160_pilon:121428..123242-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9830.t1 ID=Ggra9830.t1|Name=Ggra9830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000160_pilon:121428..123242- (Gracilaria gracilis GNS1m male)
ATGTCGTATACGCCGCCGTCGATGGACGCACAATCACCGGAGATGCAGGC
GCGCTTCTACGAGCGCGCTATCAAGCGACTCAATGACCCCCAAGCAATGG
TCAACCTCGCCGAGCTTCTCTTCTCTGACAAGCACAACCTGCTCGATTCT
CGAAGGGCAGTGCAGCTGCTTCAGCGTGCTATCAAGCAACATAGTGACCC
TACTGCCATGAATAACCTGGCTTTGTACTATTTACACAAAGGAACTGATG
CACAACGACTTGAGGTCATCCCGCTTCTCGAACACTCGCTAAGTATTGAA
GAGGATTCAATCGTGCTTCGAAACCTTTCCGACGCCGTTAAGGACGTGCG
ATGCGGCACGCCAGACCCTCAAACCGCCATTCAACTCTGCGAGCGCGCGC
TCAGGTTCGGTGAAGACCCCAAGTGCATGGAGGCCTTGGCGTATAACCTA
CTCACGGTTCCAGGAATCAAATCCGATAGCCACCGTGCTATTAGATTATA
CAAGAAGGCAATTCAAATTTCGGAAGATGCAGAAGCCATGAACCGCTTGG
GTGTGTGCTATGTGGATGGCACACAACATCTCGAGGCCTGCAGCAAACGC
GCTGCCAAGTGGTTCGAACGCGCCATCAAATATGGAGACTTGCCCGAGGC
AAAGTGTAACCTTGCGTATCTTCTCGCTGGCGAAGATCTTCCAGGGTCAA
GGCGAGATCCAGTACGCGCCGTTGCTCTGCTGGAAGAGGCATGCAAGCAG
GTAAGATCTGAGGTATGTATGCGCACTTTGGCCAAAATATACAGAGACGT
GGAGGAGGTATACAATCTGTCCAGAGCAATACAGCTCTTGGAAGCGTCGC
TCTCAGAATTCAAGTCAGCATCTGCCAGAGTTTCCTTGCTCGATATCTTT
CTTGGTTTCAAGAAACCCCCACCCGATCACGCGAAAGCGCTTCAGCTATG
CGAAGAAGATTATACCAGAACGCGAGATGTGGCTTCACTGCGAGTAATGA
GCTGTATAATGTGGAGCGGTGCTGCAAACGTCGAAGCGAATCCGAAGCGT
GCCTTGGAACTGATGCAACAACATAAGAAAGAAAGGCTTCCAGAAGAGGT
TTCGGCACTTCGATATCAAAGCGAGACATCGGAGGATAATCAGAAGCTAA
TCGACCCTCTACCCAAGATCGGTTTTTACAGCACGAAGTTAATCCTGGCC
ATCCTTCTAAGCGAATCAAACGACAAGTCTAAACTGACACAAGCTGAAAC
TCTTTTTCGTGAGGTTCTGGAAGAATCTGACGCGAAGGTTATGTTTGCGT
GGTTACCTCTGTCACTGCGGGTATGCGAGTTGCAGTTGCCGTTCCATGGC
AACCGGAGTCAAATGACGTACACAATGAAACGTGCAACACACTGCTATGA
GGCTGGCTTGCTGAACCTTGCGAGTTTTCTCCTTGAGGTGGATTGTGAGG
ATTCTAAGAAACTCGAAGCGGTGCATCTACTCGAGGATGCCATGGATACC
GGTCTGAGATTGATTTCCATGCTGAACTTGGGTTACGTGCTTTGGAAGGG
GGTTGGAGGTGTTCCGGAGGATAGAAAGCGGGCAATGGATCTGTTCGAAA
CGAGCGTGGAAGAAACTAACGATGCGTGCGCGCGGATTCTGCTTGCGAAT
GCTCTTGCTGACCGGGAAGATTGTGAAGAGGAGGAGATTGAGAGAAGTGT
GAGGTTGTGGAAGTCTGTGGAAGAGGATTATGAAGGTGATGAACGGGAGC
TGTCGAGGATGAAATGGATGATATCGGAGAGAACAAAATGCGTCTGGGGG
TCTGCCATAATGTGA

Coding sequence (CDS) from alignment at tig00000160_pilon:121428..123242-

>Ggra9830.t1 ID=Ggra9830.t1|Name=Ggra9830.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000160_pilon:121428..123242- (Gracilaria gracilis GNS1m male)
ATGTCGTATACGCCGCCGTCGATGGACGCACAATCACCGGAGATGCAGGC
GCGCTTCTACGAGCGCGCTATCAAGCGACTCAATGACCCCCAAGCAATGG
TCAACCTCGCCGAGCTTCTCTTCTCTGACAAGCACAACCTGCTCGATTCT
CGAAGGGCAGTGCAGCTGCTTCAGCGTGCTATCAAGCAACATAGTGACCC
TACTGCCATGAATAACCTGGCTTTGTACTATTTACACAAAGGAACTGATG
CACAACGACTTGAGGTCATCCCGCTTCTCGAACACTCGCTAAGTATTGAA
GAGGATTCAATCGTGCTTCGAAACCTTTCCGACGCCGTTAAGGACGTGCG
ATGCGGCACGCCAGACCCTCAAACCGCCATTCAACTCTGCGAGCGCGCGC
TCAGGTTCGGTGAAGACCCCAAGTGCATGGAGGCCTTGGCGTATAACCTA
CTCACGGTTCCAGGAATCAAATCCGATAGCCACCGTGCTATTAGATTATA
CAAGAAGGCAATTCAAATTTCGGAAGATGCAGAAGCCATGAACCGCTTGG
GTGTGTGCTATGTGGATGGCACACAACATCTCGAGGCCTGCAGCAAACGC
GCTGCCAAGTGGTTCGAACGCGCCATCAAATATGGAGACTTGCCCGAGGC
AAAGTGTAACCTTGCGTATCTTCTCGCTGGCGAAGATCTTCCAGGGTCAA
GGCGAGATCCAGTACGCGCCGTTGCTCTGCTGGAAGAGGCATGCAAGCAG
GTAAGATCTGAGGTATGTATGCGCACTTTGGCCAAAATATACAGAGACGT
GGAGGAGGTATACAATCTGTCCAGAGCAATACAGCTCTTGGAAGCGTCGC
TCTCAGAATTCAAGTCAGCATCTGCCAGAGTTTCCTTGCTCGATATCTTT
CTTGGTTTCAAGAAACCCCCACCCGATCACGCGAAAGCGCTTCAGCTATG
CGAAGAAGATTATACCAGAACGCGAGATGTGGCTTCACTGCGAGTAATGA
GCTGTATAATGTGGAGCGGTGCTGCAAACGTCGAAGCGAATCCGAAGCGT
GCCTTGGAACTGATGCAACAACATAAGAAAGAAAGGCTTCCAGAAGAGGT
TTCGGCACTTCGATATCAAAGCGAGACATCGGAGGATAATCAGAAGCTAA
TCGACCCTCTACCCAAGATCGGTTTTTACAGCACGAAGTTAATCCTGGCC
ATCCTTCTAAGCGAATCAAACGACAAGTCTAAACTGACACAAGCTGAAAC
TCTTTTTCGTGAGGTTCTGGAAGAATCTGACGCGAAGGTTATGTTTGCGT
GGTTACCTCTGTCACTGCGGGTATGCGAGTTGCAGTTGCCGTTCCATGGC
AACCGGAGTCAAATGACGTACACAATGAAACGTGCAACACACTGCTATGA
GGCTGGCTTGCTGAACCTTGCGAGTTTTCTCCTTGAGGTGGATTGTGAGG
ATTCTAAGAAACTCGAAGCGGTGCATCTACTCGAGGATGCCATGGATACC
GGTCTGAGATTGATTTCCATGCTGAACTTGGGTTACGTGCTTTGGAAGGG
GGTTGGAGGTGTTCCGGAGGATAGAAAGCGGGCAATGGATCTGTTCGAAA
CGAGCGTGGAAGAAACTAACGATGCGTGCGCGCGGATTCTGCTTGCGAAT
GCTCTTGCTGACCGGGAAGATTGTGAAGAGGAGGAGATTGAGAGAAGTGT
GAGGTTGTGGAAGTCTGTGGAAGAGGATTATGAAGGTGATGAACGGGAGC
TGTCGAGGATGAAATGGATGATATCGGAGAGAACAAAATGCGTCTGGGGG
TCTGCCATAATGTGA