Ggra185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra185.t1
Unique NameGgra185.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000158_piloncontigtig00000158_pilon:223308..224576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra185Ggra185Gracilaria gracilis GNS1m malegenetig00000158_pilon 223308..224576 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra185.t1.stop1Ggra185.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000158_pilon 223308..223310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra185.t1.CDS1Ggra185.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000158_pilon 223308..224576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra185.t1.exon1Ggra185.t1.exon1Gracilaria gracilis GNS1m maleexontig00000158_pilon 223308..224576 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra185.t1.start1Ggra185.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000158_pilon 224574..224576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra185.t1Ggra185.t1Gracilaria gracilis GNS1m malepolypeptidetig00000158_pilon 223308..224576 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra185.t1 ID=Ggra185.t1|Name=Ggra185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MANFLNNRKRRQSAAASLHMLAMSGDFNAQLQFNVAESLSILYETDPRRL
IRKNAFEKAANSARRLFGNMEEMRTSAQTPWQKQQVALLDKRLTRAQENV
LAHLSDPSSAATFILLSKFLGVSPELDQVYRADHSAKMDAAGFVAKTGMS
FIPGAGPLLGTVSRTGMKIQSSQHSASRRKGEQVQFNHEVSNIVPPSSNG
SGVSHSSFDQQRPASSSSQLQRRATAGSTQSRVSPNLQRRLQSSQSGQES
FNTGGTRGRGSGRRSIPSRGRRIVRASRPRPQQPTRERGGPRRSIQNPLR
PGAMSGEAGSDATQLSSGTRSTPRTRMQIPQQSEPREMSEDERHQMAVAM
YKKQRKKLKMVLLLKARDKQAKGIAQGRGSGLAGSSSGERANPVLEQKKK
EANSFLESVRENARKKAQQQNA*
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spliced messenger RNA

>Ggra185.t1 ID=Ggra185.t1|Name=Ggra185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000158_pilon:223308..224576- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATTTCTTAAACAACCGGAAGCGACGCCAGAGTGCCGCCGCATC
TCTCCACATGTTAGCAATGAGCGGCGACTTCAACGCACAGCTGCAATTCA
ACGTCGCCGAATCACTCTCTATTCTTTATGAGACCGATCCCAGACGCCTG
ATTCGAAAGAACGCGTTCGAGAAAGCAGCAAATTCTGCACGTAGACTATT
TGGCAACATGGAAGAAATGAGAACTTCTGCCCAAACACCGTGGCAGAAGC
AACAAGTAGCTCTATTGGACAAGCGCCTGACAAGGGCTCAAGAAAACGTT
TTAGCACACCTTTCGGATCCTTCCTCGGCCGCCACATTCATCCTGCTTTC
AAAGTTTCTGGGAGTCTCCCCTGAACTCGACCAGGTATATAGAGCGGATC
ATTCGGCGAAGATGGATGCGGCTGGTTTCGTGGCAAAAACTGGGATGTCG
TTCATTCCTGGTGCCGGGCCGCTTCTAGGAACTGTTTCAAGAACTGGTAT
GAAGATCCAATCGAGCCAACATTCTGCATCTCGGCGCAAAGGAGAGCAAG
TGCAGTTCAATCACGAGGTCTCAAACATAGTACCGCCGTCTTCAAATGGT
TCAGGGGTTTCTCATTCGTCCTTCGATCAGCAAAGACCAGCCTCAAGTTC
ATCTCAACTGCAAAGACGAGCAACTGCAGGAAGTACTCAATCCAGGGTCT
CACCCAATCTCCAACGTCGCCTTCAGAGCTCTCAATCTGGGCAAGAGAGT
TTCAATACGGGTGGAACTCGTGGAAGAGGATCTGGGCGACGTAGTATTCC
TTCGAGGGGAAGAAGGATAGTAAGAGCATCCAGGCCGCGTCCCCAACAAC
CTACGAGAGAAAGAGGGGGTCCGCGTAGATCGATTCAAAATCCTTTGCGG
CCTGGTGCTATGTCAGGTGAAGCAGGGAGTGATGCAACCCAGCTATCGTC
TGGTACACGGTCAACACCACGAACAAGAATGCAGATTCCGCAACAAAGTG
AACCGCGAGAAATGAGTGAGGATGAACGGCACCAGATGGCAGTAGCAATG
TACAAGAAGCAGAGAAAGAAGTTGAAGATGGTCTTGCTTTTGAAGGCTAG
AGATAAGCAAGCAAAAGGGATTGCACAGGGTAGAGGTTCTGGTCTGGCAG
GGAGTTCGTCAGGAGAGCGAGCAAACCCTGTTTTGGAGCAAAAGAAGAAG
GAAGCAAACAGTTTTCTAGAGAGTGTGAGGGAAAATGCAAGGAAGAAAGC
CCAGCAGCAGAACGCATAA
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protein sequence of Ggra185.t1

>Ggra185.t1 ID=Ggra185.t1|Name=Ggra185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MANFLNNRKRRQSAAASLHMLAMSGDFNAQLQFNVAESLSILYETDPRRL
IRKNAFEKAANSARRLFGNMEEMRTSAQTPWQKQQVALLDKRLTRAQENV
LAHLSDPSSAATFILLSKFLGVSPELDQVYRADHSAKMDAAGFVAKTGMS
FIPGAGPLLGTVSRTGMKIQSSQHSASRRKGEQVQFNHEVSNIVPPSSNG
SGVSHSSFDQQRPASSSSQLQRRATAGSTQSRVSPNLQRRLQSSQSGQES
FNTGGTRGRGSGRRSIPSRGRRIVRASRPRPQQPTRERGGPRRSIQNPLR
PGAMSGEAGSDATQLSSGTRSTPRTRMQIPQQSEPREMSEDERHQMAVAM
YKKQRKKLKMVLLLKARDKQAKGIAQGRGSGLAGSSSGERANPVLEQKKK
EANSFLESVRENARKKAQQQNA*
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mRNA from alignment at tig00000158_pilon:223308..224576-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra185.t1 ID=Ggra185.t1|Name=Ggra185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000158_pilon:223308..224576- (Gracilaria gracilis GNS1m male)
ATGGCCAATTTCTTAAACAACCGGAAGCGACGCCAGAGTGCCGCCGCATC
TCTCCACATGTTAGCAATGAGCGGCGACTTCAACGCACAGCTGCAATTCA
ACGTCGCCGAATCACTCTCTATTCTTTATGAGACCGATCCCAGACGCCTG
ATTCGAAAGAACGCGTTCGAGAAAGCAGCAAATTCTGCACGTAGACTATT
TGGCAACATGGAAGAAATGAGAACTTCTGCCCAAACACCGTGGCAGAAGC
AACAAGTAGCTCTATTGGACAAGCGCCTGACAAGGGCTCAAGAAAACGTT
TTAGCACACCTTTCGGATCCTTCCTCGGCCGCCACATTCATCCTGCTTTC
AAAGTTTCTGGGAGTCTCCCCTGAACTCGACCAGGTATATAGAGCGGATC
ATTCGGCGAAGATGGATGCGGCTGGTTTCGTGGCAAAAACTGGGATGTCG
TTCATTCCTGGTGCCGGGCCGCTTCTAGGAACTGTTTCAAGAACTGGTAT
GAAGATCCAATCGAGCCAACATTCTGCATCTCGGCGCAAAGGAGAGCAAG
TGCAGTTCAATCACGAGGTCTCAAACATAGTACCGCCGTCTTCAAATGGT
TCAGGGGTTTCTCATTCGTCCTTCGATCAGCAAAGACCAGCCTCAAGTTC
ATCTCAACTGCAAAGACGAGCAACTGCAGGAAGTACTCAATCCAGGGTCT
CACCCAATCTCCAACGTCGCCTTCAGAGCTCTCAATCTGGGCAAGAGAGT
TTCAATACGGGTGGAACTCGTGGAAGAGGATCTGGGCGACGTAGTATTCC
TTCGAGGGGAAGAAGGATAGTAAGAGCATCCAGGCCGCGTCCCCAACAAC
CTACGAGAGAAAGAGGGGGTCCGCGTAGATCGATTCAAAATCCTTTGCGG
CCTGGTGCTATGTCAGGTGAAGCAGGGAGTGATGCAACCCAGCTATCGTC
TGGTACACGGTCAACACCACGAACAAGAATGCAGATTCCGCAACAAAGTG
AACCGCGAGAAATGAGTGAGGATGAACGGCACCAGATGGCAGTAGCAATG
TACAAGAAGCAGAGAAAGAAGTTGAAGATGGTCTTGCTTTTGAAGGCTAG
AGATAAGCAAGCAAAAGGGATTGCACAGGGTAGAGGTTCTGGTCTGGCAG
GGAGTTCGTCAGGAGAGCGAGCAAACCCTGTTTTGGAGCAAAAGAAGAAG
GAAGCAAACAGTTTTCTAGAGAGTGTGAGGGAAAATGCAAGGAAGAAAGC
CCAGCAGCAGAACGCATAA
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Coding sequence (CDS) from alignment at tig00000158_pilon:223308..224576-

>Ggra185.t1 ID=Ggra185.t1|Name=Ggra185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000158_pilon:223308..224576- (Gracilaria gracilis GNS1m male)
ATGGCCAATTTCTTAAACAACCGGAAGCGACGCCAGAGTGCCGCCGCATC
TCTCCACATGTTAGCAATGAGCGGCGACTTCAACGCACAGCTGCAATTCA
ACGTCGCCGAATCACTCTCTATTCTTTATGAGACCGATCCCAGACGCCTG
ATTCGAAAGAACGCGTTCGAGAAAGCAGCAAATTCTGCACGTAGACTATT
TGGCAACATGGAAGAAATGAGAACTTCTGCCCAAACACCGTGGCAGAAGC
AACAAGTAGCTCTATTGGACAAGCGCCTGACAAGGGCTCAAGAAAACGTT
TTAGCACACCTTTCGGATCCTTCCTCGGCCGCCACATTCATCCTGCTTTC
AAAGTTTCTGGGAGTCTCCCCTGAACTCGACCAGGTATATAGAGCGGATC
ATTCGGCGAAGATGGATGCGGCTGGTTTCGTGGCAAAAACTGGGATGTCG
TTCATTCCTGGTGCCGGGCCGCTTCTAGGAACTGTTTCAAGAACTGGTAT
GAAGATCCAATCGAGCCAACATTCTGCATCTCGGCGCAAAGGAGAGCAAG
TGCAGTTCAATCACGAGGTCTCAAACATAGTACCGCCGTCTTCAAATGGT
TCAGGGGTTTCTCATTCGTCCTTCGATCAGCAAAGACCAGCCTCAAGTTC
ATCTCAACTGCAAAGACGAGCAACTGCAGGAAGTACTCAATCCAGGGTCT
CACCCAATCTCCAACGTCGCCTTCAGAGCTCTCAATCTGGGCAAGAGAGT
TTCAATACGGGTGGAACTCGTGGAAGAGGATCTGGGCGACGTAGTATTCC
TTCGAGGGGAAGAAGGATAGTAAGAGCATCCAGGCCGCGTCCCCAACAAC
CTACGAGAGAAAGAGGGGGTCCGCGTAGATCGATTCAAAATCCTTTGCGG
CCTGGTGCTATGTCAGGTGAAGCAGGGAGTGATGCAACCCAGCTATCGTC
TGGTACACGGTCAACACCACGAACAAGAATGCAGATTCCGCAACAAAGTG
AACCGCGAGAAATGAGTGAGGATGAACGGCACCAGATGGCAGTAGCAATG
TACAAGAAGCAGAGAAAGAAGTTGAAGATGGTCTTGCTTTTGAAGGCTAG
AGATAAGCAAGCAAAAGGGATTGCACAGGGTAGAGGTTCTGGTCTGGCAG
GGAGTTCGTCAGGAGAGCGAGCAAACCCTGTTTTGGAGCAAAAGAAGAAG
GAAGCAAACAGTTTTCTAGAGAGTGTGAGGGAAAATGCAAGGAAGAAAGC
CCAGCAGCAGAACGCATAA
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