Ggra184.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra184.t1
Unique NameGgra184.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000158_piloncontigtig00000158_pilon:218434..219672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra184Ggra184Gracilaria gracilis GNS1m malegenetig00000158_pilon 218434..219672 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra184.t1.start1Ggra184.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000158_pilon 218434..218436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra184.t1.CDS1Ggra184.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000158_pilon 218434..219672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra184.t1.exon1Ggra184.t1.exon1Gracilaria gracilis GNS1m maleexontig00000158_pilon 218434..219672 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra184.t1.stop1Ggra184.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000158_pilon 219670..219672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra184.t1Ggra184.t1Gracilaria gracilis GNS1m malepolypeptidetig00000158_pilon 218434..219672 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra184.t1 ID=Ggra184.t1|Name=Ggra184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=413bp
MTDPLQDNIHLHISSFPSEVLQRVFQIGVEEAWVSSMDKIEQHEHNVDEE
EDQEDDDNESGNAHENNSGCFQRFTKGYNPFATLPELVTLLNCAEVCKTW
ADAIINKDFWHSVLSRGSFNDALAEPWKLGKRWNRLLKDVPVPILCMEED
LLSNIGKIHTSLRRGRDAFEVYILSNSEEKKQIFDAWSNLQPILQTNVPR
LTITNQRIESGRDVIESTPVGFETIALKKWPLLQSLDIDFAQNGIVCREV
MRDWGEFIRKTAEMLSADPPFPSLKNLVLSTHVDTAAARNVTLVAPHVDH
FHLRISGYQDDSLLNNWDRLRNCGVLWQFLEQNKRYRTYITPYCIHAFKW
PGPKTMSEFEKGWRFMSFMATNSPDSGVLISERRNGKRCEILLTLDQFFQ
VEDLRAICVPLE*
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spliced messenger RNA

>Ggra184.t1 ID=Ggra184.t1|Name=Ggra184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000158_pilon:218434..219672+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACCCTCTCCAAGATAACATTCATCTTCACATCTCTTCTTTTCC
TAGTGAAGTTCTCCAACGCGTATTTCAGATCGGCGTGGAAGAAGCCTGGG
TCTCGTCTATGGACAAAATCGAACAACATGAACacaacgtcgacgaagaa
gaagaccaagaagacgacgaTAATGAATCCGGTAATGCCCATGAAAACAA
TAGTGGCTGTTTTCAACGTTTCACAAAGGGTTACAACCCCTTTGCAACAC
TACCAGAACTTGTAACACTACTGAATTGTGCCGAGGTGTGTAAGACATGG
GCCGACGCCATTATCAACAAGGACTTTTGGCATTCAGTGCTATCTCGAGG
TTCATTCAATGACGCACTCGCCGAACCTTGGAAGTTAGGAAAAAGATGGA
ATCGGCTATTGAAAGACGTTCCCGTACCGATCCTTTGCATGGAGGAAGAC
CTACTTTCCAATATTGGAAAAATTCACACTTCGCTCCGTAGAGGTCGTGA
TGCGTTTGAAGTTTACATCCTGTCTAATAGTGAGGAGAAAAAGCAGATCT
TCGACGCATGGTCTAATCTGCAACCTATTCTGCAGACGAATGTCCCGCGT
CTTACAATTACCAATCAAAGGATAGAATCTGGCAGAGATGTTATCGAAAG
CACTCCTGTTGGTTTTGAAACGATAGCGCTGAAGAAATGGCCGTTGCTGC
AGTCTTTAGACATTGACTTTGCGCAGAATGGCATAGTTTGTCGAGAAGTG
ATGCGAGATTGGGGCGAATTTATCAGAAAGACGGCTGAAATGTTGAGCGC
AGATCCACCCTTTCCCTCTCTAAAGAATCTTGTGCTTTCCACGCATGTCG
ACACGGCAGCGGCTCGGAATGTCACTCTAGTCGCGCCGCACGTTGATCAT
TTTCATTTAAGAATTTCTGGATACCAGGACGACTCTTTGTTGAATAACTG
GGATCGGCTTCGAAACTGTGGTGTTCTTTGGCAATTTCTAGAGCAGAACA
AGCGCTACAGAACTTATATTACTCCGTACTGCATTCATGCGTTTAAGTGG
CCCGGGCCAAAGACCATGAGTGAATTCGAGAAAGGGTGGAGATTTATGTC
CTTTATGGCCACAAATTCCCCAGATTCGGGCGTATTGATTTCGGAGAGAA
GAAATGGCAAGAGATGTGAGATACTTCTCACTCTCGACCAGTTTTTTCAA
GTCGAAGATCTTAGAGCCATATGTGTTCCTTTGGAATAG
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protein sequence of Ggra184.t1

>Ggra184.t1 ID=Ggra184.t1|Name=Ggra184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MTDPLQDNIHLHISSFPSEVLQRVFQIGVEEAWVSSMDKIEQHEHNVDEE
EDQEDDDNESGNAHENNSGCFQRFTKGYNPFATLPELVTLLNCAEVCKTW
ADAIINKDFWHSVLSRGSFNDALAEPWKLGKRWNRLLKDVPVPILCMEED
LLSNIGKIHTSLRRGRDAFEVYILSNSEEKKQIFDAWSNLQPILQTNVPR
LTITNQRIESGRDVIESTPVGFETIALKKWPLLQSLDIDFAQNGIVCREV
MRDWGEFIRKTAEMLSADPPFPSLKNLVLSTHVDTAAARNVTLVAPHVDH
FHLRISGYQDDSLLNNWDRLRNCGVLWQFLEQNKRYRTYITPYCIHAFKW
PGPKTMSEFEKGWRFMSFMATNSPDSGVLISERRNGKRCEILLTLDQFFQ
VEDLRAICVPLE*
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mRNA from alignment at tig00000158_pilon:218434..219672+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra184.t1 ID=Ggra184.t1|Name=Ggra184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000158_pilon:218434..219672+ (Gracilaria gracilis GNS1m male)
ATGACGGACCCTCTCCAAGATAACATTCATCTTCACATCTCTTCTTTTCC
TAGTGAAGTTCTCCAACGCGTATTTCAGATCGGCGTGGAAGAAGCCTGGG
TCTCGTCTATGGACAAAATCGAACAACATGAACacaacgtcgacgaagaa
gaagaccaagaagacgacgaTAATGAATCCGGTAATGCCCATGAAAACAA
TAGTGGCTGTTTTCAACGTTTCACAAAGGGTTACAACCCCTTTGCAACAC
TACCAGAACTTGTAACACTACTGAATTGTGCCGAGGTGTGTAAGACATGG
GCCGACGCCATTATCAACAAGGACTTTTGGCATTCAGTGCTATCTCGAGG
TTCATTCAATGACGCACTCGCCGAACCTTGGAAGTTAGGAAAAAGATGGA
ATCGGCTATTGAAAGACGTTCCCGTACCGATCCTTTGCATGGAGGAAGAC
CTACTTTCCAATATTGGAAAAATTCACACTTCGCTCCGTAGAGGTCGTGA
TGCGTTTGAAGTTTACATCCTGTCTAATAGTGAGGAGAAAAAGCAGATCT
TCGACGCATGGTCTAATCTGCAACCTATTCTGCAGACGAATGTCCCGCGT
CTTACAATTACCAATCAAAGGATAGAATCTGGCAGAGATGTTATCGAAAG
CACTCCTGTTGGTTTTGAAACGATAGCGCTGAAGAAATGGCCGTTGCTGC
AGTCTTTAGACATTGACTTTGCGCAGAATGGCATAGTTTGTCGAGAAGTG
ATGCGAGATTGGGGCGAATTTATCAGAAAGACGGCTGAAATGTTGAGCGC
AGATCCACCCTTTCCCTCTCTAAAGAATCTTGTGCTTTCCACGCATGTCG
ACACGGCAGCGGCTCGGAATGTCACTCTAGTCGCGCCGCACGTTGATCAT
TTTCATTTAAGAATTTCTGGATACCAGGACGACTCTTTGTTGAATAACTG
GGATCGGCTTCGAAACTGTGGTGTTCTTTGGCAATTTCTAGAGCAGAACA
AGCGCTACAGAACTTATATTACTCCGTACTGCATTCATGCGTTTAAGTGG
CCCGGGCCAAAGACCATGAGTGAATTCGAGAAAGGGTGGAGATTTATGTC
CTTTATGGCCACAAATTCCCCAGATTCGGGCGTATTGATTTCGGAGAGAA
GAAATGGCAAGAGATGTGAGATACTTCTCACTCTCGACCAGTTTTTTCAA
GTCGAAGATCTTAGAGCCATATGTGTTCCTTTGGAATAG
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Coding sequence (CDS) from alignment at tig00000158_pilon:218434..219672+

>Ggra184.t1 ID=Ggra184.t1|Name=Ggra184.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00000158_pilon:218434..219672+ (Gracilaria gracilis GNS1m male)
ATGACGGACCCTCTCCAAGATAACATTCATCTTCACATCTCTTCTTTTCC
TAGTGAAGTTCTCCAACGCGTATTTCAGATCGGCGTGGAAGAAGCCTGGG
TCTCGTCTATGGACAAAATCGAACAACATGAACacaacgtcgacgaagaa
gaagaccaagaagacgacgaTAATGAATCCGGTAATGCCCATGAAAACAA
TAGTGGCTGTTTTCAACGTTTCACAAAGGGTTACAACCCCTTTGCAACAC
TACCAGAACTTGTAACACTACTGAATTGTGCCGAGGTGTGTAAGACATGG
GCCGACGCCATTATCAACAAGGACTTTTGGCATTCAGTGCTATCTCGAGG
TTCATTCAATGACGCACTCGCCGAACCTTGGAAGTTAGGAAAAAGATGGA
ATCGGCTATTGAAAGACGTTCCCGTACCGATCCTTTGCATGGAGGAAGAC
CTACTTTCCAATATTGGAAAAATTCACACTTCGCTCCGTAGAGGTCGTGA
TGCGTTTGAAGTTTACATCCTGTCTAATAGTGAGGAGAAAAAGCAGATCT
TCGACGCATGGTCTAATCTGCAACCTATTCTGCAGACGAATGTCCCGCGT
CTTACAATTACCAATCAAAGGATAGAATCTGGCAGAGATGTTATCGAAAG
CACTCCTGTTGGTTTTGAAACGATAGCGCTGAAGAAATGGCCGTTGCTGC
AGTCTTTAGACATTGACTTTGCGCAGAATGGCATAGTTTGTCGAGAAGTG
ATGCGAGATTGGGGCGAATTTATCAGAAAGACGGCTGAAATGTTGAGCGC
AGATCCACCCTTTCCCTCTCTAAAGAATCTTGTGCTTTCCACGCATGTCG
ACACGGCAGCGGCTCGGAATGTCACTCTAGTCGCGCCGCACGTTGATCAT
TTTCATTTAAGAATTTCTGGATACCAGGACGACTCTTTGTTGAATAACTG
GGATCGGCTTCGAAACTGTGGTGTTCTTTGGCAATTTCTAGAGCAGAACA
AGCGCTACAGAACTTATATTACTCCGTACTGCATTCATGCGTTTAAGTGG
CCCGGGCCAAAGACCATGAGTGAATTCGAGAAAGGGTGGAGATTTATGTC
CTTTATGGCCACAAATTCCCCAGATTCGGGCGTATTGATTTCGGAGAGAA
GAAATGGCAAGAGATGTGAGATACTTCTCACTCTCGACCAGTTTTTTCAA
GTCGAAGATCTTAGAGCCATATGTGTTCCTTTGGAATAG
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