Ggra177.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra177.t1
Unique NameGgra177.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000158_piloncontigtig00000158_pilon:48715..49497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog426716.JOAJ01000001_gene1603
PFAMsAcetyltransf_1
Max annot lvl201174|Actinobacteria
Evalue5.43e-32
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,2I9Y3@201174|Actinobacteria,4G0P0@85025|Nocardiaceae
DescriptionAcetyltransferase (GNAT) family
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra177Ggra177Gracilaria gracilis GNS1m malegenetig00000158_pilon 48715..49497 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra177.t1.start1Ggra177.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000158_pilon 48715..48717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra177.t1.CDS1Ggra177.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000158_pilon 48715..49497 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra177.t1.exon1Ggra177.t1.exon1Gracilaria gracilis GNS1m maleexontig00000158_pilon 48715..49497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra177.t1.stop1Ggra177.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000158_pilon 49495..49497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra177.t1Ggra177.t1Gracilaria gracilis GNS1m malepolypeptidetig00000158_pilon 48715..49497 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra177.t1 ID=Ggra177.t1|Name=Ggra177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MDPSQKFSPPVPTASSPVSQPNHSESTNRDIAQTKPPPLGTASARAPTQS
APPSRPVRVLDDPKEIESLAHTLASAFEDDPFLNCFHGPHAKHKYEKRLI
LNRTVIRAELTRSKGETTIHVSEDGACVAIWHHVGHWKISGFYSLCLLVA
LFRCFGWRALAMASFIDKVEKLHPTRPHMHLFIMGTDKEHQGKGYGSAVM
SEMLKQCDLLRLPAYLESSNELNISFYRRHGFEVVEKIRRHPDCPPISTM
WREPRPIERE*
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spliced messenger RNA

>Ggra177.t1 ID=Ggra177.t1|Name=Ggra177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000158_pilon:48715..49497+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCTCCCAAAAGTTCTCGCCGCCAGTCCCCACGGCCTCCAGCCC
CGTCTCCCAGCCAAATCACTCAGAATCAACCAATCGCGACATTGCGCAAA
CGAAGCCTCCTCCACTCGGAACGGCGTCTGCACGAGCCCCGACACAGTCT
GCACCCCCCTCTCGCCCCGTCCGCGTGCTCGATGATCCGAAAGAAATAGA
GAGTCTTGCACACACGCTCGCATCCGCTTTCGAAGACGACCCGTTTCTGA
ACTGCTTTCATGGACCGCACGCCAAACACAAGTACGAAAAGCGTCTCATC
CTCAATAGGACCGTAATTCGGGCCGAGCTCACCCGTTCGAAAGGTGAGAC
CACGATCCACGTTTCGGAAGATGGTGCATGTGTTGCCATATGGCACCATG
TTGGCCACTGGAAAATATCCGGCTTCTACTCGCTATGCCTCCTTGTAGCA
CTTTTCCGTTGCTTTGGGTGGCGCGCGCTAGCGATGGCGTCCTTCATCGA
TAAGGTTGAAAAGCTACACCCCACACGCCCTCACATGCATCTCTTCATAA
TGGGAACGGACAAAGAGCACCAAGGAAAGGGGTATGGCTCTGCAGTTATG
TCTGAAATGTTGAAGCAATGTGATCTGCTGCGTCTTCCAGCGTACCTAGA
ATCGTCTAATGAGCTCAACATTTCGTTCTACAGACGGCATGGCTTCGAGG
TCGTTGAGAAGATCCGAAGGCACCCGGATTGCCCACCCATCTCTACGATG
TGGAGAGAACCGCGACCAATTGAAAGGGAATAA
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protein sequence of Ggra177.t1

>Ggra177.t1 ID=Ggra177.t1|Name=Ggra177.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MDPSQKFSPPVPTASSPVSQPNHSESTNRDIAQTKPPPLGTASARAPTQS
APPSRPVRVLDDPKEIESLAHTLASAFEDDPFLNCFHGPHAKHKYEKRLI
LNRTVIRAELTRSKGETTIHVSEDGACVAIWHHVGHWKISGFYSLCLLVA
LFRCFGWRALAMASFIDKVEKLHPTRPHMHLFIMGTDKEHQGKGYGSAVM
SEMLKQCDLLRLPAYLESSNELNISFYRRHGFEVVEKIRRHPDCPPISTM
WREPRPIERE*
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mRNA from alignment at tig00000158_pilon:48715..49497+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra177.t1 ID=Ggra177.t1|Name=Ggra177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000158_pilon:48715..49497+ (Gracilaria gracilis GNS1m male)
ATGGACCCCTCCCAAAAGTTCTCGCCGCCAGTCCCCACGGCCTCCAGCCC
CGTCTCCCAGCCAAATCACTCAGAATCAACCAATCGCGACATTGCGCAAA
CGAAGCCTCCTCCACTCGGAACGGCGTCTGCACGAGCCCCGACACAGTCT
GCACCCCCCTCTCGCCCCGTCCGCGTGCTCGATGATCCGAAAGAAATAGA
GAGTCTTGCACACACGCTCGCATCCGCTTTCGAAGACGACCCGTTTCTGA
ACTGCTTTCATGGACCGCACGCCAAACACAAGTACGAAAAGCGTCTCATC
CTCAATAGGACCGTAATTCGGGCCGAGCTCACCCGTTCGAAAGGTGAGAC
CACGATCCACGTTTCGGAAGATGGTGCATGTGTTGCCATATGGCACCATG
TTGGCCACTGGAAAATATCCGGCTTCTACTCGCTATGCCTCCTTGTAGCA
CTTTTCCGTTGCTTTGGGTGGCGCGCGCTAGCGATGGCGTCCTTCATCGA
TAAGGTTGAAAAGCTACACCCCACACGCCCTCACATGCATCTCTTCATAA
TGGGAACGGACAAAGAGCACCAAGGAAAGGGGTATGGCTCTGCAGTTATG
TCTGAAATGTTGAAGCAATGTGATCTGCTGCGTCTTCCAGCGTACCTAGA
ATCGTCTAATGAGCTCAACATTTCGTTCTACAGACGGCATGGCTTCGAGG
TCGTTGAGAAGATCCGAAGGCACCCGGATTGCCCACCCATCTCTACGATG
TGGAGAGAACCGCGACCAATTGAAAGGGAATAA
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Coding sequence (CDS) from alignment at tig00000158_pilon:48715..49497+

>Ggra177.t1 ID=Ggra177.t1|Name=Ggra177.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000158_pilon:48715..49497+ (Gracilaria gracilis GNS1m male)
ATGGACCCCTCCCAAAAGTTCTCGCCGCCAGTCCCCACGGCCTCCAGCCC
CGTCTCCCAGCCAAATCACTCAGAATCAACCAATCGCGACATTGCGCAAA
CGAAGCCTCCTCCACTCGGAACGGCGTCTGCACGAGCCCCGACACAGTCT
GCACCCCCCTCTCGCCCCGTCCGCGTGCTCGATGATCCGAAAGAAATAGA
GAGTCTTGCACACACGCTCGCATCCGCTTTCGAAGACGACCCGTTTCTGA
ACTGCTTTCATGGACCGCACGCCAAACACAAGTACGAAAAGCGTCTCATC
CTCAATAGGACCGTAATTCGGGCCGAGCTCACCCGTTCGAAAGGTGAGAC
CACGATCCACGTTTCGGAAGATGGTGCATGTGTTGCCATATGGCACCATG
TTGGCCACTGGAAAATATCCGGCTTCTACTCGCTATGCCTCCTTGTAGCA
CTTTTCCGTTGCTTTGGGTGGCGCGCGCTAGCGATGGCGTCCTTCATCGA
TAAGGTTGAAAAGCTACACCCCACACGCCCTCACATGCATCTCTTCATAA
TGGGAACGGACAAAGAGCACCAAGGAAAGGGGTATGGCTCTGCAGTTATG
TCTGAAATGTTGAAGCAATGTGATCTGCTGCGTCTTCCAGCGTACCTAGA
ATCGTCTAATGAGCTCAACATTTCGTTCTACAGACGGCATGGCTTCGAGG
TCGTTGAGAAGATCCGAAGGCACCCGGATTGCCCACCCATCTCTACGATG
TGGAGAGAACCGCGACCAATTGAAAGGGAATAA
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