Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005707879.1 |
| PFAMs | DnaJ,DnaJ_C,DnaJ_CXXCXGXG |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K09503 |
| KEGG Pathway | ko04141,map04141 |
| Evalue | 3.13e-147 |
| EggNOG OGs | COG0484@1|root,KOG0712@2759|Eukaryota |
| Description | heat shock protein binding |
| COG category | O |
| BRITE | ko00000,ko00001,ko03029,ko03110 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9641.t1.start1 | Ggra9641.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000150_pilon 296195..296197 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9641.t1.intron1 | Ggra9641.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000150_pilon 296300..296399 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9641.t1.stop1 | Ggra9641.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000150_pilon 297543..297545 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MFGGFPGMEGMGGMGGMGGMGRRRKVDNDRFYQLLGVEKDASLSQIKKAY
RKLAMTHHPDRGGDEERFKEITTAFEVLSDEEKRQLYDDYGEEGLREGGG
PADAHDLFSAMFGGGASRGPRKGEPVVHSLRVTLEDLYKGKTSKLAIIRN
RACKTCRGRGASRPEAVETCYVCHGRGIQVTLNQIGPGMVQQVQNSCRNC
KGMGQTINERFRCETCRGDKVVKERKVLEVYVDKGMQHGQKITFTGEANA
NPGAVAGDVIVVLKQEEHDRFNRKENNLVYDAEIELVDALCGVDFYIKQL
DGRLLHVHSPPGTVITPGMVKSIPNEGMPIWKNPMERGFMFVKFAVKFPR
YISPTESHRLHTVFGQGTPLPPSGDAEVEEVQMIEFDQDHVKQTQANGSA
YDEDDEEQHRVSCAQG* back to topspliced messenger RNA >Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000150_pilon:296195..297545+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCGGAGGTTTTCCAGGTATGGAGGGAATGGGCGGTATGGGCGGTAT
GGGCGGTATGGGCAGGCGTCGCAAAGTTGACAATGACCGCTTCTACCAAC
TACTGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATTAAGAAGGCCTAT
CGAAAGCTGGCAATGACTCATCACCCTGATCGAGGAGGTGATGAGGAACG
ATTCAAGGAAATCACTACAGCCTTTGAGGTACTCAGCGATGAGGAAAAGC
GACAGCTGTACGATGACTACGGTGAAGAAGGCCTCCGTGAAGGTGGCGGA
CCCGCTGACGCTCATGATCTCTTCAGCGCCATGTTTGGTGGCGGTGCCTC
AAGGGGACCGAGGAAAGGCGAACCAGTCGTCCACAGCCTTCGTGTCACAC
TGGAAGACCTCTACAAAGGAAAGACAAGCAAGCTCGCAATCATCCGTAAC
AGAGCATGCAAGACGTGTAGGGGAAGAGGCGCAAGCAGACCTGAAGCTGT
AGAAACTTGTTATGTATGTCACGGCAGGGGAATTCAGGTCACCTTGAATC
AAATCGGCCCGGGTATGGTCCAACAGGTTCAAAACTCTTGCCGCAACTGC
AAGGGTATGGGTCAGACAATCAATGAGAGGTTCCGATGCGAAACTTGCAG
AGGTGACAAGGTTGTCAAGGAGAGAAAGGTTTTGGAAGTATATGTCGACA
AGGGAATGCAACATGGTCAGAAAATCACTTTCACTGGCGAGGCCAATGCC
AACCCTGGTGCTGTCGCCGGAGATGTTATTGTTGTCCTCAAACAGGAAGA
ACATGATCGTTTCAATCGGAAAGAAAACAATCTCGTCTATGACGCCGAGA
TTGAGCTCGTCGACGCCTTGTGCGGTGTCGATTTCTATATCAAGCAGCTA
GATGGTAGACTTTTGCATGTACACTCTCCCCCTGGAACTGTGATAACTCC
TGGAATGGTTAAGAGTATCCCGAATGAGGGTATGCCTATCTGGAAGAATC
CAATGGAACGGGGATTTATGTTTGTTAAGTTCGCCGTGAAGTTCCCGAGA
TATATATCACCGACGGAAAGCCATCGTCTTCACACCGTTTTTGGTCAGGG
CACGCCATTGCCTCCTTCGGGTGATGCTGAGGTGGAAGAAGTTCAAATGA
TCGAATTCGACCAGGATCACGTCAAGCAGACGCAAGCGAATGGCTCGGCG
TACGATGAAGATGACGAGGAGCAGCACAGAGTATCGTGTGCGCAGGGATA
G back to topprotein sequence of Ggra9641.t1 >Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MFGGFPGMEGMGGMGGMGGMGRRRKVDNDRFYQLLGVEKDASLSQIKKAY
RKLAMTHHPDRGGDEERFKEITTAFEVLSDEEKRQLYDDYGEEGLREGGG
PADAHDLFSAMFGGGASRGPRKGEPVVHSLRVTLEDLYKGKTSKLAIIRN
RACKTCRGRGASRPEAVETCYVCHGRGIQVTLNQIGPGMVQQVQNSCRNC
KGMGQTINERFRCETCRGDKVVKERKVLEVYVDKGMQHGQKITFTGEANA
NPGAVAGDVIVVLKQEEHDRFNRKENNLVYDAEIELVDALCGVDFYIKQL
DGRLLHVHSPPGTVITPGMVKSIPNEGMPIWKNPMERGFMFVKFAVKFPR
YISPTESHRLHTVFGQGTPLPPSGDAEVEEVQMIEFDQDHVKQTQANGSA
YDEDDEEQHRVSCAQG* back to topmRNA from alignment at tig00000150_pilon:296195..297545+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1351bp|location=Sequence derived from alignment at tig00000150_pilon:296195..297545+ (Gracilaria gracilis GNS1m male)
ATGTTCGGAGGTTTTCCAGGTATGGAGGGAATGGGCGGTATGGGCGGTAT
GGGCGGTATGGGCAGGCGTCGCAAAGTTGACAATGACCGCTTCTACCAAC
TACTGGTATGTTTGCACACCTCTCCATGTTTCTCCGAGTCAAACAGTGTC
TGTCGCGGCCTTCGACTAACTCTCTAAACCCTATGTCCACCTATGTCTCA
CACAGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATTAAGAAGGCCTAT
CGAAAGCTGGCAATGACTCATCACCCTGATCGAGGAGGTGATGAGGAACG
ATTCAAGGAAATCACTACAGCCTTTGAGGTACTCAGCGATGAGGAAAAGC
GACAGCTGTACGATGACTACGGTGAAGAAGGCCTCCGTGAAGGTGGCGGA
CCCGCTGACGCTCATGATCTCTTCAGCGCCATGTTTGGTGGCGGTGCCTC
AAGGGGACCGAGGAAAGGCGAACCAGTCGTCCACAGCCTTCGTGTCACAC
TGGAAGACCTCTACAAAGGAAAGACAAGCAAGCTCGCAATCATCCGTAAC
AGAGCATGCAAGACGTGTAGGGGAAGAGGCGCAAGCAGACCTGAAGCTGT
AGAAACTTGTTATGTATGTCACGGCAGGGGAATTCAGGTCACCTTGAATC
AAATCGGCCCGGGTATGGTCCAACAGGTTCAAAACTCTTGCCGCAACTGC
AAGGGTATGGGTCAGACAATCAATGAGAGGTTCCGATGCGAAACTTGCAG
AGGTGACAAGGTTGTCAAGGAGAGAAAGGTTTTGGAAGTATATGTCGACA
AGGGAATGCAACATGGTCAGAAAATCACTTTCACTGGCGAGGCCAATGCC
AACCCTGGTGCTGTCGCCGGAGATGTTATTGTTGTCCTCAAACAGGAAGA
ACATGATCGTTTCAATCGGAAAGAAAACAATCTCGTCTATGACGCCGAGA
TTGAGCTCGTCGACGCCTTGTGCGGTGTCGATTTCTATATCAAGCAGCTA
GATGGTAGACTTTTGCATGTACACTCTCCCCCTGGAACTGTGATAACTCC
TGGAATGGTTAAGAGTATCCCGAATGAGGGTATGCCTATCTGGAAGAATC
CAATGGAACGGGGATTTATGTTTGTTAAGTTCGCCGTGAAGTTCCCGAGA
TATATATCACCGACGGAAAGCCATCGTCTTCACACCGTTTTTGGTCAGGG
CACGCCATTGCCTCCTTCGGGTGATGCTGAGGTGGAAGAAGTTCAAATGA
TCGAATTCGACCAGGATCACGTCAAGCAGACGCAAGCGAATGGCTCGGCG
TACGATGAAGATGACGAGGAGCAGCACAGAGTATCGTGTGCGCAGGGATA
G back to topCoding sequence (CDS) from alignment at tig00000150_pilon:296195..297545+ >Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000150_pilon:296195..297545+ (Gracilaria gracilis GNS1m male)
ATGTTCGGAGGTTTTCCAGGTATGGAGGGAATGGGCGGTATGGGCGGTAT
GGGCGGTATGGGCAGGCGTCGCAAAGTTGACAATGACCGCTTCTACCAAC
TACTGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATTAAGAAGGCCTAT
CGAAAGCTGGCAATGACTCATCACCCTGATCGAGGAGGTGATGAGGAACG
ATTCAAGGAAATCACTACAGCCTTTGAGGTACTCAGCGATGAGGAAAAGC
GACAGCTGTACGATGACTACGGTGAAGAAGGCCTCCGTGAAGGTGGCGGA
CCCGCTGACGCTCATGATCTCTTCAGCGCCATGTTTGGTGGCGGTGCCTC
AAGGGGACCGAGGAAAGGCGAACCAGTCGTCCACAGCCTTCGTGTCACAC
TGGAAGACCTCTACAAAGGAAAGACAAGCAAGCTCGCAATCATCCGTAAC
AGAGCATGCAAGACGTGTAGGGGAAGAGGCGCAAGCAGACCTGAAGCTGT
AGAAACTTGTTATGTATGTCACGGCAGGGGAATTCAGGTCACCTTGAATC
AAATCGGCCCGGGTATGGTCCAACAGGTTCAAAACTCTTGCCGCAACTGC
AAGGGTATGGGTCAGACAATCAATGAGAGGTTCCGATGCGAAACTTGCAG
AGGTGACAAGGTTGTCAAGGAGAGAAAGGTTTTGGAAGTATATGTCGACA
AGGGAATGCAACATGGTCAGAAAATCACTTTCACTGGCGAGGCCAATGCC
AACCCTGGTGCTGTCGCCGGAGATGTTATTGTTGTCCTCAAACAGGAAGA
ACATGATCGTTTCAATCGGAAAGAAAACAATCTCGTCTATGACGCCGAGA
TTGAGCTCGTCGACGCCTTGTGCGGTGTCGATTTCTATATCAAGCAGCTA
GATGGTAGACTTTTGCATGTACACTCTCCCCCTGGAACTGTGATAACTCC
TGGAATGGTTAAGAGTATCCCGAATGAGGGTATGCCTATCTGGAAGAATC
CAATGGAACGGGGATTTATGTTTGTTAAGTTCGCCGTGAAGTTCCCGAGA
TATATATCACCGACGGAAAGCCATCGTCTTCACACCGTTTTTGGTCAGGG
CACGCCATTGCCTCCTTCGGGTGATGCTGAGGTGGAAGAAGTTCAAATGA
TCGAATTCGACCAGGATCACGTCAAGCAGACGCAAGCGAATGGCTCGGCG
TACGATGAAGATGACGAGGAGCAGCACAGAGTATCGTGTGCGCAGGGATA
G back to top
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