Ggra9641.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9641.t1
Unique NameGgra9641.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000150_piloncontigtig00000150_pilon:296195..297545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707879.1
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl2759|Eukaryota
KEGG koko:K09503
KEGG Pathwayko04141,map04141
Evalue3.13e-147
EggNOG OGsCOG0484@1|root,KOG0712@2759|Eukaryota
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko00001,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9641Ggra9641Gracilaria gracilis GNS1m malegenetig00000150_pilon 296195..297545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9641.t1Ggra9641.t1Gracilaria gracilis GNS1m malepolypeptidetig00000150_pilon 296195..297545 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9641.t1.start1Ggra9641.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000150_pilon 296195..296197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9641.t1.CDS1Ggra9641.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000150_pilon 296195..296299 +
Ggra9641.t1.CDS2Ggra9641.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000150_pilon 296400..297545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9641.t1.exon1Ggra9641.t1.exon1Gracilaria gracilis GNS1m maleexontig00000150_pilon 296195..296299 +
Ggra9641.t1.exon2Ggra9641.t1.exon2Gracilaria gracilis GNS1m maleexontig00000150_pilon 296400..297545 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9641.t1.intron1Ggra9641.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000150_pilon 296300..296399 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9641.t1.stop1Ggra9641.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000150_pilon 297543..297545 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MFGGFPGMEGMGGMGGMGGMGRRRKVDNDRFYQLLGVEKDASLSQIKKAY
RKLAMTHHPDRGGDEERFKEITTAFEVLSDEEKRQLYDDYGEEGLREGGG
PADAHDLFSAMFGGGASRGPRKGEPVVHSLRVTLEDLYKGKTSKLAIIRN
RACKTCRGRGASRPEAVETCYVCHGRGIQVTLNQIGPGMVQQVQNSCRNC
KGMGQTINERFRCETCRGDKVVKERKVLEVYVDKGMQHGQKITFTGEANA
NPGAVAGDVIVVLKQEEHDRFNRKENNLVYDAEIELVDALCGVDFYIKQL
DGRLLHVHSPPGTVITPGMVKSIPNEGMPIWKNPMERGFMFVKFAVKFPR
YISPTESHRLHTVFGQGTPLPPSGDAEVEEVQMIEFDQDHVKQTQANGSA
YDEDDEEQHRVSCAQG*
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spliced messenger RNA

>Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000150_pilon:296195..297545+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGAGGTTTTCCAGGTATGGAGGGAATGGGCGGTATGGGCGGTAT
GGGCGGTATGGGCAGGCGTCGCAAAGTTGACAATGACCGCTTCTACCAAC
TACTGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATTAAGAAGGCCTAT
CGAAAGCTGGCAATGACTCATCACCCTGATCGAGGAGGTGATGAGGAACG
ATTCAAGGAAATCACTACAGCCTTTGAGGTACTCAGCGATGAGGAAAAGC
GACAGCTGTACGATGACTACGGTGAAGAAGGCCTCCGTGAAGGTGGCGGA
CCCGCTGACGCTCATGATCTCTTCAGCGCCATGTTTGGTGGCGGTGCCTC
AAGGGGACCGAGGAAAGGCGAACCAGTCGTCCACAGCCTTCGTGTCACAC
TGGAAGACCTCTACAAAGGAAAGACAAGCAAGCTCGCAATCATCCGTAAC
AGAGCATGCAAGACGTGTAGGGGAAGAGGCGCAAGCAGACCTGAAGCTGT
AGAAACTTGTTATGTATGTCACGGCAGGGGAATTCAGGTCACCTTGAATC
AAATCGGCCCGGGTATGGTCCAACAGGTTCAAAACTCTTGCCGCAACTGC
AAGGGTATGGGTCAGACAATCAATGAGAGGTTCCGATGCGAAACTTGCAG
AGGTGACAAGGTTGTCAAGGAGAGAAAGGTTTTGGAAGTATATGTCGACA
AGGGAATGCAACATGGTCAGAAAATCACTTTCACTGGCGAGGCCAATGCC
AACCCTGGTGCTGTCGCCGGAGATGTTATTGTTGTCCTCAAACAGGAAGA
ACATGATCGTTTCAATCGGAAAGAAAACAATCTCGTCTATGACGCCGAGA
TTGAGCTCGTCGACGCCTTGTGCGGTGTCGATTTCTATATCAAGCAGCTA
GATGGTAGACTTTTGCATGTACACTCTCCCCCTGGAACTGTGATAACTCC
TGGAATGGTTAAGAGTATCCCGAATGAGGGTATGCCTATCTGGAAGAATC
CAATGGAACGGGGATTTATGTTTGTTAAGTTCGCCGTGAAGTTCCCGAGA
TATATATCACCGACGGAAAGCCATCGTCTTCACACCGTTTTTGGTCAGGG
CACGCCATTGCCTCCTTCGGGTGATGCTGAGGTGGAAGAAGTTCAAATGA
TCGAATTCGACCAGGATCACGTCAAGCAGACGCAAGCGAATGGCTCGGCG
TACGATGAAGATGACGAGGAGCAGCACAGAGTATCGTGTGCGCAGGGATA
G
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protein sequence of Ggra9641.t1

>Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MFGGFPGMEGMGGMGGMGGMGRRRKVDNDRFYQLLGVEKDASLSQIKKAY
RKLAMTHHPDRGGDEERFKEITTAFEVLSDEEKRQLYDDYGEEGLREGGG
PADAHDLFSAMFGGGASRGPRKGEPVVHSLRVTLEDLYKGKTSKLAIIRN
RACKTCRGRGASRPEAVETCYVCHGRGIQVTLNQIGPGMVQQVQNSCRNC
KGMGQTINERFRCETCRGDKVVKERKVLEVYVDKGMQHGQKITFTGEANA
NPGAVAGDVIVVLKQEEHDRFNRKENNLVYDAEIELVDALCGVDFYIKQL
DGRLLHVHSPPGTVITPGMVKSIPNEGMPIWKNPMERGFMFVKFAVKFPR
YISPTESHRLHTVFGQGTPLPPSGDAEVEEVQMIEFDQDHVKQTQANGSA
YDEDDEEQHRVSCAQG*
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mRNA from alignment at tig00000150_pilon:296195..297545+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1351bp|location=Sequence derived from alignment at tig00000150_pilon:296195..297545+ (Gracilaria gracilis GNS1m male)
ATGTTCGGAGGTTTTCCAGGTATGGAGGGAATGGGCGGTATGGGCGGTAT
GGGCGGTATGGGCAGGCGTCGCAAAGTTGACAATGACCGCTTCTACCAAC
TACTGGTATGTTTGCACACCTCTCCATGTTTCTCCGAGTCAAACAGTGTC
TGTCGCGGCCTTCGACTAACTCTCTAAACCCTATGTCCACCTATGTCTCA
CACAGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATTAAGAAGGCCTAT
CGAAAGCTGGCAATGACTCATCACCCTGATCGAGGAGGTGATGAGGAACG
ATTCAAGGAAATCACTACAGCCTTTGAGGTACTCAGCGATGAGGAAAAGC
GACAGCTGTACGATGACTACGGTGAAGAAGGCCTCCGTGAAGGTGGCGGA
CCCGCTGACGCTCATGATCTCTTCAGCGCCATGTTTGGTGGCGGTGCCTC
AAGGGGACCGAGGAAAGGCGAACCAGTCGTCCACAGCCTTCGTGTCACAC
TGGAAGACCTCTACAAAGGAAAGACAAGCAAGCTCGCAATCATCCGTAAC
AGAGCATGCAAGACGTGTAGGGGAAGAGGCGCAAGCAGACCTGAAGCTGT
AGAAACTTGTTATGTATGTCACGGCAGGGGAATTCAGGTCACCTTGAATC
AAATCGGCCCGGGTATGGTCCAACAGGTTCAAAACTCTTGCCGCAACTGC
AAGGGTATGGGTCAGACAATCAATGAGAGGTTCCGATGCGAAACTTGCAG
AGGTGACAAGGTTGTCAAGGAGAGAAAGGTTTTGGAAGTATATGTCGACA
AGGGAATGCAACATGGTCAGAAAATCACTTTCACTGGCGAGGCCAATGCC
AACCCTGGTGCTGTCGCCGGAGATGTTATTGTTGTCCTCAAACAGGAAGA
ACATGATCGTTTCAATCGGAAAGAAAACAATCTCGTCTATGACGCCGAGA
TTGAGCTCGTCGACGCCTTGTGCGGTGTCGATTTCTATATCAAGCAGCTA
GATGGTAGACTTTTGCATGTACACTCTCCCCCTGGAACTGTGATAACTCC
TGGAATGGTTAAGAGTATCCCGAATGAGGGTATGCCTATCTGGAAGAATC
CAATGGAACGGGGATTTATGTTTGTTAAGTTCGCCGTGAAGTTCCCGAGA
TATATATCACCGACGGAAAGCCATCGTCTTCACACCGTTTTTGGTCAGGG
CACGCCATTGCCTCCTTCGGGTGATGCTGAGGTGGAAGAAGTTCAAATGA
TCGAATTCGACCAGGATCACGTCAAGCAGACGCAAGCGAATGGCTCGGCG
TACGATGAAGATGACGAGGAGCAGCACAGAGTATCGTGTGCGCAGGGATA
G
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Coding sequence (CDS) from alignment at tig00000150_pilon:296195..297545+

>Ggra9641.t1 ID=Ggra9641.t1|Name=Ggra9641.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000150_pilon:296195..297545+ (Gracilaria gracilis GNS1m male)
ATGTTCGGAGGTTTTCCAGGTATGGAGGGAATGGGCGGTATGGGCGGTAT
GGGCGGTATGGGCAGGCGTCGCAAAGTTGACAATGACCGCTTCTACCAAC
TACTGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATTAAGAAGGCCTAT
CGAAAGCTGGCAATGACTCATCACCCTGATCGAGGAGGTGATGAGGAACG
ATTCAAGGAAATCACTACAGCCTTTGAGGTACTCAGCGATGAGGAAAAGC
GACAGCTGTACGATGACTACGGTGAAGAAGGCCTCCGTGAAGGTGGCGGA
CCCGCTGACGCTCATGATCTCTTCAGCGCCATGTTTGGTGGCGGTGCCTC
AAGGGGACCGAGGAAAGGCGAACCAGTCGTCCACAGCCTTCGTGTCACAC
TGGAAGACCTCTACAAAGGAAAGACAAGCAAGCTCGCAATCATCCGTAAC
AGAGCATGCAAGACGTGTAGGGGAAGAGGCGCAAGCAGACCTGAAGCTGT
AGAAACTTGTTATGTATGTCACGGCAGGGGAATTCAGGTCACCTTGAATC
AAATCGGCCCGGGTATGGTCCAACAGGTTCAAAACTCTTGCCGCAACTGC
AAGGGTATGGGTCAGACAATCAATGAGAGGTTCCGATGCGAAACTTGCAG
AGGTGACAAGGTTGTCAAGGAGAGAAAGGTTTTGGAAGTATATGTCGACA
AGGGAATGCAACATGGTCAGAAAATCACTTTCACTGGCGAGGCCAATGCC
AACCCTGGTGCTGTCGCCGGAGATGTTATTGTTGTCCTCAAACAGGAAGA
ACATGATCGTTTCAATCGGAAAGAAAACAATCTCGTCTATGACGCCGAGA
TTGAGCTCGTCGACGCCTTGTGCGGTGTCGATTTCTATATCAAGCAGCTA
GATGGTAGACTTTTGCATGTACACTCTCCCCCTGGAACTGTGATAACTCC
TGGAATGGTTAAGAGTATCCCGAATGAGGGTATGCCTATCTGGAAGAATC
CAATGGAACGGGGATTTATGTTTGTTAAGTTCGCCGTGAAGTTCCCGAGA
TATATATCACCGACGGAAAGCCATCGTCTTCACACCGTTTTTGGTCAGGG
CACGCCATTGCCTCCTTCGGGTGATGCTGAGGTGGAAGAAGTTCAAATGA
TCGAATTCGACCAGGATCACGTCAAGCAGACGCAAGCGAATGGCTCGGCG
TACGATGAAGATGACGAGGAGCAGCACAGAGTATCGTGTGCGCAGGGATA
G
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