Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005704651.1 |
| PFAMs | KH_1,WW |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K13210 |
| Evalue | 3.13e-40 |
| EggNOG OGs | KOG1676@1|root,KOG1676@2759|Eukaryota |
| Description | negative regulation of low-density lipoprotein particle clearance |
| COG category | S |
| BRITE | ko00000,ko03019,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9896.t1.start1 | Ggra9896.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000009_pilon 111464..111466 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9896.t1.stop1 | Ggra9896.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000009_pilon 113993..113995 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=844bp
MPSSHLRRSIDDPPSRARQIASSFRRRSITPNPTTSALPSKRPPPDYPHP
DSPPRAVIRRTESSSSMSESPDSETNHNPPSSPSHTASNPSPPDLVEHSD
DHLYESAPKQPQAHDFVIVPAEHVGLIIGKHGDTIKAIQNASNAIVSMDR
SYPSRDRKFRISGTEDAVSHCRTLIRRRLEVVRTRSDSPLETREMWIPMS
KIGLVIGAGGVTIRSIKDKTGAYATVHNDQVEGDRKLLTIHGTAQQTTHA
RQLIVEILQSAPLAPPRDSSLGDGDNSTAMYIPRAAVGCVIGSRGTTLRL
LHQKSGATIRVASDEEAGDSLERQIIISGSMAAVDRARSMIHFVIREGSL
RNFEEERPDVPHSRRDDVHPFDSVSRIRDIRRRAYSQGRKEDSFILSAEH
IGLLIGKNGTNIREMQNRSGAIIEVSGKNESERDSSHRTVSIFGSSTEVK
IAKLLIEEKIGISHDEECPEVEEPNSVLAAQDQNARDKGQSEAQDGQSTG
SSTSEESQAEKRQDDKENIPSKEVLKESSTRAKPQRVSKTIKAISNKKRD
AEEKTKDGEGQSEASLTNTAVESTGAVLKRNHTDSKQRRVSQNSQSRNNS
GSKSTDFNKRHAKDSSKHHTAAVMPGQVPSNVHLPQPHNSYAPPFVPHGQ
YHPQFAPPPPYYGEPNLGAYSYYAAPPPHATYHQHTMPAISTPMSTNGMG
GGRSHGSPHGSASIPSEQNEVTSAITMENSKSYGDKQGPTNGGSTKTGKM
TQTQVPAQFYPTYYQQQPTAPVMYPAVSPMYGSYVYNQHPNQFNPAPSDY
TASKVFGAPHTEAFPHPFAMSVNPGIPAPQHGTSISPVAGNSG* back to topspliced messenger RNA >Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2532bp|location=Sequence derived from alignment at tig00000009_pilon:111464..113995+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCATCTTCACACCTTCGGCGTTCCATCGATGATCCCCCTTCACGCGC
AAGGCAGATAGCAAGCTCGTTTCGTCGGCGCAGTATAACACCCAACCCCA
CCACTTCCGCTCTCCCATCGAAGCGGCCCCCACCCGATTACCCGCATCCC
GATTCGCCACCCCGAGCAGTCATCCGTCGAACTGAGTCTTCCTCCTCAAT
GTCGGAATCTCCAGATTCAGAGACCAACCACAATCCCCCGTCATCCCCCT
CGCACACAGCTTCCAACCCCAGTCCTCCCGATCTCGTTGAGCACTCTGAC
GACCATCTGTACGAATCCGCACCAAAGCAGCCACAAGCACACGATTTTGT
CATAGTGCCCGCTGAGCATGTTGGTCTCATCATTGGTAAACACGGCGATA
CCATCAAGGCCATACAAAACGCCTCCAACGCAATTGTGTCCATGGATCGC
AGCTACCCCAGCCGCGACCGAAAGTTTCGTATCAGTGGTACTGAGGATGC
TGTCAGTCATTGTCGCACTCTAATTCGGCGCCGTCTTGAGGTTGTGCGCA
CTCGTTCAGACTCTCCGTTGGAGACTCGAGAGATGTGGATTCCGATGTCG
AAAATTGGGCTCGTCATTGGTGCTGGAGGTGTTACCATTCGGTCCATCAA
AGACAAAACTGGCGCTTATGCCACGGTCCATAACGATCAGGTTGAGGGAG
ATCGGAAACTGCTCACCATTCATGGCACAGCGCAGCAAACCACTCATGCC
CGCCAGTTAATTGTAGAGATCCTGCAAAGTGCGCCACTTGCACCTCCGCG
GGACTCTTCTCTTGGAGACGGTGATAACTCAACAGCGATGTATATCCCGC
GTGCGGCTGTTGGCTGTGTGATCGGCTCACGTGGCACTACACTACGATTA
TTGCACCAGAAAAGCGGTGCAACCATCAGAGTCGCTTCAGATGAGGAAGC
TGGTGATAGTCTCGAGAGGCAGATAATCATATCGGGGAGTATGGCAGCTG
TTGATCGCGCGCGCTCTATGATTCATTTCGTAATTCGCGAAGGTTCCTTG
CGTAACTTCGAGGAAGAGCGTCCAGACGTCCCTCACTCGCGACGGGATGA
TGTTCATCCTTTTGACAGTGTATCTAGGATTCGTGATATACGGCGCCGCG
CCTATTCGCAAGGGAGAAAAGAAGATTCCTTCATACTGTCCGCCGAGCAT
ATTGGCTTACTGATTGGCAAGAATGGCACAAACATACGTGAAATGCAGAA
CAGGTCAGGTGCAATTATCGAGGTTTCGGGCAAGAACGAGTCCGAAAGAG
ACAGCTCACATCGTACCGTTTCTATTTTCGGTTCTTCAACTGAAGTGAAG
ATCGCAAAGTTGCTCATCGAAGAAAAGATTGGCATCAGTCACGATGAAGA
ATGTCCCGAGGTAGAAGAACCAAACTCAGTGCTCGCGGCACAAGATCAAA
ACGCTCGGGACAAGGGGCAAAGCGAAGCTCAAGATGGCCAGTCAACCGGC
TCTTCGACTTCTGAAGAATCCCAGGCAGAAAAACGGCAGGACGATAAAGA
AAACATACCGTCTAAGGAAGTCCTGAAGGAATCTTCCACACGTGCGAAGC
CTCAACGGGTGTCTAAAACCATCAAAGCCATTTCGAACAAGAAACGAGAT
GCAGAAGAAAAGACCAAGGATGGCGAAGGACAGTCAGAAGCATCTTTGAC
AAACACCGCTGTTGAGAGCACCGGCGCGGTGTTGAAGAGAAACCACACGG
ACAGCAAACAGCGAAGAGTCAGTCAAAACTCTCAATCCCGCAATAATTCT
GGATCGAAGTCTACTGATTTCAATAAGAGGCATGCGAAGGATAGTTCGAA
GCATCATACAGCTGCCGTGATGCCAGGACAGGTTCCATCAAACGTGCATC
TACCCCAGCCACACAACTCCTACGCTCCTCCATTTGTGCCCCACGGACAA
TACCATCCTCAGTTTGCGCCTCCGCCCCCATACTACGGGGAGCCGAACTT
GGGGGCTTACTCCTACTATGCAGCACCTCCACCACACGCAACATACCATC
AGCATACCATGCCAGCCATATCCACCCCGATGTCCACCAACGGCATGGGA
GGGGGGCGCTCTCACGGTTCCCCCCATGGGTCCGCTTCAATCCCAAGTGA
GCAGAACGAAGTAACGTCCGCAATCACAATGGAAAACAGCAAGTCATATG
GGGACAAACAGGGACCAACAAATGGTGGATCCACGAAAACGGGGAAAATG
ACACAAACTCAGGTTCCAGCACAGTTTTATCCCACTTACTATCAACAACA
ACCTACCGCACCAGTCATGTATCCAGCAGTCTCACCCATGTACGGCAGCT
ATGTATATAATCAGCACCCAAATCAGTTCAATCCAGCACCTAGTGATTAC
ACGGCGAGTAAGGTTTTTGGAGCGCCCCATACGGAAGCGTTCCCGCACCC
TTTTGCGATGTCGGTGAATCCTGGAATTCCAGCACCGCAGCACGGGACAA
GTATATCTCCGGTTGCAGGGAACAGCGGATAG back to topprotein sequence of Ggra9896.t1 >Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=844bp
MPSSHLRRSIDDPPSRARQIASSFRRRSITPNPTTSALPSKRPPPDYPHP
DSPPRAVIRRTESSSSMSESPDSETNHNPPSSPSHTASNPSPPDLVEHSD
DHLYESAPKQPQAHDFVIVPAEHVGLIIGKHGDTIKAIQNASNAIVSMDR
SYPSRDRKFRISGTEDAVSHCRTLIRRRLEVVRTRSDSPLETREMWIPMS
KIGLVIGAGGVTIRSIKDKTGAYATVHNDQVEGDRKLLTIHGTAQQTTHA
RQLIVEILQSAPLAPPRDSSLGDGDNSTAMYIPRAAVGCVIGSRGTTLRL
LHQKSGATIRVASDEEAGDSLERQIIISGSMAAVDRARSMIHFVIREGSL
RNFEEERPDVPHSRRDDVHPFDSVSRIRDIRRRAYSQGRKEDSFILSAEH
IGLLIGKNGTNIREMQNRSGAIIEVSGKNESERDSSHRTVSIFGSSTEVK
IAKLLIEEKIGISHDEECPEVEEPNSVLAAQDQNARDKGQSEAQDGQSTG
SSTSEESQAEKRQDDKENIPSKEVLKESSTRAKPQRVSKTIKAISNKKRD
AEEKTKDGEGQSEASLTNTAVESTGAVLKRNHTDSKQRRVSQNSQSRNNS
GSKSTDFNKRHAKDSSKHHTAAVMPGQVPSNVHLPQPHNSYAPPFVPHGQ
YHPQFAPPPPYYGEPNLGAYSYYAAPPPHATYHQHTMPAISTPMSTNGMG
GGRSHGSPHGSASIPSEQNEVTSAITMENSKSYGDKQGPTNGGSTKTGKM
TQTQVPAQFYPTYYQQQPTAPVMYPAVSPMYGSYVYNQHPNQFNPAPSDY
TASKVFGAPHTEAFPHPFAMSVNPGIPAPQHGTSISPVAGNSG* back to topmRNA from alignment at tig00000009_pilon:111464..113995+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2532bp|location=Sequence derived from alignment at tig00000009_pilon:111464..113995+ (Gracilaria gracilis GNS1m male)
ATGCCATCTTCACACCTTCGGCGTTCCATCGATGATCCCCCTTCACGCGC
AAGGCAGATAGCAAGCTCGTTTCGTCGGCGCAGTATAACACCCAACCCCA
CCACTTCCGCTCTCCCATCGAAGCGGCCCCCACCCGATTACCCGCATCCC
GATTCGCCACCCCGAGCAGTCATCCGTCGAACTGAGTCTTCCTCCTCAAT
GTCGGAATCTCCAGATTCAGAGACCAACCACAATCCCCCGTCATCCCCCT
CGCACACAGCTTCCAACCCCAGTCCTCCCGATCTCGTTGAGCACTCTGAC
GACCATCTGTACGAATCCGCACCAAAGCAGCCACAAGCACACGATTTTGT
CATAGTGCCCGCTGAGCATGTTGGTCTCATCATTGGTAAACACGGCGATA
CCATCAAGGCCATACAAAACGCCTCCAACGCAATTGTGTCCATGGATCGC
AGCTACCCCAGCCGCGACCGAAAGTTTCGTATCAGTGGTACTGAGGATGC
TGTCAGTCATTGTCGCACTCTAATTCGGCGCCGTCTTGAGGTTGTGCGCA
CTCGTTCAGACTCTCCGTTGGAGACTCGAGAGATGTGGATTCCGATGTCG
AAAATTGGGCTCGTCATTGGTGCTGGAGGTGTTACCATTCGGTCCATCAA
AGACAAAACTGGCGCTTATGCCACGGTCCATAACGATCAGGTTGAGGGAG
ATCGGAAACTGCTCACCATTCATGGCACAGCGCAGCAAACCACTCATGCC
CGCCAGTTAATTGTAGAGATCCTGCAAAGTGCGCCACTTGCACCTCCGCG
GGACTCTTCTCTTGGAGACGGTGATAACTCAACAGCGATGTATATCCCGC
GTGCGGCTGTTGGCTGTGTGATCGGCTCACGTGGCACTACACTACGATTA
TTGCACCAGAAAAGCGGTGCAACCATCAGAGTCGCTTCAGATGAGGAAGC
TGGTGATAGTCTCGAGAGGCAGATAATCATATCGGGGAGTATGGCAGCTG
TTGATCGCGCGCGCTCTATGATTCATTTCGTAATTCGCGAAGGTTCCTTG
CGTAACTTCGAGGAAGAGCGTCCAGACGTCCCTCACTCGCGACGGGATGA
TGTTCATCCTTTTGACAGTGTATCTAGGATTCGTGATATACGGCGCCGCG
CCTATTCGCAAGGGAGAAAAGAAGATTCCTTCATACTGTCCGCCGAGCAT
ATTGGCTTACTGATTGGCAAGAATGGCACAAACATACGTGAAATGCAGAA
CAGGTCAGGTGCAATTATCGAGGTTTCGGGCAAGAACGAGTCCGAAAGAG
ACAGCTCACATCGTACCGTTTCTATTTTCGGTTCTTCAACTGAAGTGAAG
ATCGCAAAGTTGCTCATCGAAGAAAAGATTGGCATCAGTCACGATGAAGA
ATGTCCCGAGGTAGAAGAACCAAACTCAGTGCTCGCGGCACAAGATCAAA
ACGCTCGGGACAAGGGGCAAAGCGAAGCTCAAGATGGCCAGTCAACCGGC
TCTTCGACTTCTGAAGAATCCCAGGCAGAAAAACGGCAGGACGATAAAGA
AAACATACCGTCTAAGGAAGTCCTGAAGGAATCTTCCACACGTGCGAAGC
CTCAACGGGTGTCTAAAACCATCAAAGCCATTTCGAACAAGAAACGAGAT
GCAGAAGAAAAGACCAAGGATGGCGAAGGACAGTCAGAAGCATCTTTGAC
AAACACCGCTGTTGAGAGCACCGGCGCGGTGTTGAAGAGAAACCACACGG
ACAGCAAACAGCGAAGAGTCAGTCAAAACTCTCAATCCCGCAATAATTCT
GGATCGAAGTCTACTGATTTCAATAAGAGGCATGCGAAGGATAGTTCGAA
GCATCATACAGCTGCCGTGATGCCAGGACAGGTTCCATCAAACGTGCATC
TACCCCAGCCACACAACTCCTACGCTCCTCCATTTGTGCCCCACGGACAA
TACCATCCTCAGTTTGCGCCTCCGCCCCCATACTACGGGGAGCCGAACTT
GGGGGCTTACTCCTACTATGCAGCACCTCCACCACACGCAACATACCATC
AGCATACCATGCCAGCCATATCCACCCCGATGTCCACCAACGGCATGGGA
GGGGGGCGCTCTCACGGTTCCCCCCATGGGTCCGCTTCAATCCCAAGTGA
GCAGAACGAAGTAACGTCCGCAATCACAATGGAAAACAGCAAGTCATATG
GGGACAAACAGGGACCAACAAATGGTGGATCCACGAAAACGGGGAAAATG
ACACAAACTCAGGTTCCAGCACAGTTTTATCCCACTTACTATCAACAACA
ACCTACCGCACCAGTCATGTATCCAGCAGTCTCACCCATGTACGGCAGCT
ATGTATATAATCAGCACCCAAATCAGTTCAATCCAGCACCTAGTGATTAC
ACGGCGAGTAAGGTTTTTGGAGCGCCCCATACGGAAGCGTTCCCGCACCC
TTTTGCGATGTCGGTGAATCCTGGAATTCCAGCACCGCAGCACGGGACAA
GTATATCTCCGGTTGCAGGGAACAGCGGATAG back to topCoding sequence (CDS) from alignment at tig00000009_pilon:111464..113995+ >Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2532bp|location=Sequence derived from alignment at tig00000009_pilon:111464..113995+ (Gracilaria gracilis GNS1m male)
ATGCCATCTTCACACCTTCGGCGTTCCATCGATGATCCCCCTTCACGCGC
AAGGCAGATAGCAAGCTCGTTTCGTCGGCGCAGTATAACACCCAACCCCA
CCACTTCCGCTCTCCCATCGAAGCGGCCCCCACCCGATTACCCGCATCCC
GATTCGCCACCCCGAGCAGTCATCCGTCGAACTGAGTCTTCCTCCTCAAT
GTCGGAATCTCCAGATTCAGAGACCAACCACAATCCCCCGTCATCCCCCT
CGCACACAGCTTCCAACCCCAGTCCTCCCGATCTCGTTGAGCACTCTGAC
GACCATCTGTACGAATCCGCACCAAAGCAGCCACAAGCACACGATTTTGT
CATAGTGCCCGCTGAGCATGTTGGTCTCATCATTGGTAAACACGGCGATA
CCATCAAGGCCATACAAAACGCCTCCAACGCAATTGTGTCCATGGATCGC
AGCTACCCCAGCCGCGACCGAAAGTTTCGTATCAGTGGTACTGAGGATGC
TGTCAGTCATTGTCGCACTCTAATTCGGCGCCGTCTTGAGGTTGTGCGCA
CTCGTTCAGACTCTCCGTTGGAGACTCGAGAGATGTGGATTCCGATGTCG
AAAATTGGGCTCGTCATTGGTGCTGGAGGTGTTACCATTCGGTCCATCAA
AGACAAAACTGGCGCTTATGCCACGGTCCATAACGATCAGGTTGAGGGAG
ATCGGAAACTGCTCACCATTCATGGCACAGCGCAGCAAACCACTCATGCC
CGCCAGTTAATTGTAGAGATCCTGCAAAGTGCGCCACTTGCACCTCCGCG
GGACTCTTCTCTTGGAGACGGTGATAACTCAACAGCGATGTATATCCCGC
GTGCGGCTGTTGGCTGTGTGATCGGCTCACGTGGCACTACACTACGATTA
TTGCACCAGAAAAGCGGTGCAACCATCAGAGTCGCTTCAGATGAGGAAGC
TGGTGATAGTCTCGAGAGGCAGATAATCATATCGGGGAGTATGGCAGCTG
TTGATCGCGCGCGCTCTATGATTCATTTCGTAATTCGCGAAGGTTCCTTG
CGTAACTTCGAGGAAGAGCGTCCAGACGTCCCTCACTCGCGACGGGATGA
TGTTCATCCTTTTGACAGTGTATCTAGGATTCGTGATATACGGCGCCGCG
CCTATTCGCAAGGGAGAAAAGAAGATTCCTTCATACTGTCCGCCGAGCAT
ATTGGCTTACTGATTGGCAAGAATGGCACAAACATACGTGAAATGCAGAA
CAGGTCAGGTGCAATTATCGAGGTTTCGGGCAAGAACGAGTCCGAAAGAG
ACAGCTCACATCGTACCGTTTCTATTTTCGGTTCTTCAACTGAAGTGAAG
ATCGCAAAGTTGCTCATCGAAGAAAAGATTGGCATCAGTCACGATGAAGA
ATGTCCCGAGGTAGAAGAACCAAACTCAGTGCTCGCGGCACAAGATCAAA
ACGCTCGGGACAAGGGGCAAAGCGAAGCTCAAGATGGCCAGTCAACCGGC
TCTTCGACTTCTGAAGAATCCCAGGCAGAAAAACGGCAGGACGATAAAGA
AAACATACCGTCTAAGGAAGTCCTGAAGGAATCTTCCACACGTGCGAAGC
CTCAACGGGTGTCTAAAACCATCAAAGCCATTTCGAACAAGAAACGAGAT
GCAGAAGAAAAGACCAAGGATGGCGAAGGACAGTCAGAAGCATCTTTGAC
AAACACCGCTGTTGAGAGCACCGGCGCGGTGTTGAAGAGAAACCACACGG
ACAGCAAACAGCGAAGAGTCAGTCAAAACTCTCAATCCCGCAATAATTCT
GGATCGAAGTCTACTGATTTCAATAAGAGGCATGCGAAGGATAGTTCGAA
GCATCATACAGCTGCCGTGATGCCAGGACAGGTTCCATCAAACGTGCATC
TACCCCAGCCACACAACTCCTACGCTCCTCCATTTGTGCCCCACGGACAA
TACCATCCTCAGTTTGCGCCTCCGCCCCCATACTACGGGGAGCCGAACTT
GGGGGCTTACTCCTACTATGCAGCACCTCCACCACACGCAACATACCATC
AGCATACCATGCCAGCCATATCCACCCCGATGTCCACCAACGGCATGGGA
GGGGGGCGCTCTCACGGTTCCCCCCATGGGTCCGCTTCAATCCCAAGTGA
GCAGAACGAAGTAACGTCCGCAATCACAATGGAAAACAGCAAGTCATATG
GGGACAAACAGGGACCAACAAATGGTGGATCCACGAAAACGGGGAAAATG
ACACAAACTCAGGTTCCAGCACAGTTTTATCCCACTTACTATCAACAACA
ACCTACCGCACCAGTCATGTATCCAGCAGTCTCACCCATGTACGGCAGCT
ATGTATATAATCAGCACCCAAATCAGTTCAATCCAGCACCTAGTGATTAC
ACGGCGAGTAAGGTTTTTGGAGCGCCCCATACGGAAGCGTTCCCGCACCC
TTTTGCGATGTCGGTGAATCCTGGAATTCCAGCACCGCAGCACGGGACAA
GTATATCTCCGGTTGCAGGGAACAGCGGATAG back to top
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