Ggra9896.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9896.t1
Unique NameGgra9896.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length844
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:111464..113995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704651.1
PFAMsKH_1,WW
Max annot lvl2759|Eukaryota
KEGG koko:K13210
Evalue3.13e-40
EggNOG OGsKOG1676@1|root,KOG1676@2759|Eukaryota
Descriptionnegative regulation of low-density lipoprotein particle clearance
COG categoryS
BRITEko00000,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9896Ggra9896Gracilaria gracilis GNS1m malegenetig00000009_pilon 111464..113995 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9896.t1.start1Ggra9896.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 111464..111466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9896.t1.CDS1Ggra9896.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 111464..113995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9896.t1.exon1Ggra9896.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 111464..113995 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9896.t1.stop1Ggra9896.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 113993..113995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9896.t1Ggra9896.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 111464..113995 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=844bp
MPSSHLRRSIDDPPSRARQIASSFRRRSITPNPTTSALPSKRPPPDYPHP
DSPPRAVIRRTESSSSMSESPDSETNHNPPSSPSHTASNPSPPDLVEHSD
DHLYESAPKQPQAHDFVIVPAEHVGLIIGKHGDTIKAIQNASNAIVSMDR
SYPSRDRKFRISGTEDAVSHCRTLIRRRLEVVRTRSDSPLETREMWIPMS
KIGLVIGAGGVTIRSIKDKTGAYATVHNDQVEGDRKLLTIHGTAQQTTHA
RQLIVEILQSAPLAPPRDSSLGDGDNSTAMYIPRAAVGCVIGSRGTTLRL
LHQKSGATIRVASDEEAGDSLERQIIISGSMAAVDRARSMIHFVIREGSL
RNFEEERPDVPHSRRDDVHPFDSVSRIRDIRRRAYSQGRKEDSFILSAEH
IGLLIGKNGTNIREMQNRSGAIIEVSGKNESERDSSHRTVSIFGSSTEVK
IAKLLIEEKIGISHDEECPEVEEPNSVLAAQDQNARDKGQSEAQDGQSTG
SSTSEESQAEKRQDDKENIPSKEVLKESSTRAKPQRVSKTIKAISNKKRD
AEEKTKDGEGQSEASLTNTAVESTGAVLKRNHTDSKQRRVSQNSQSRNNS
GSKSTDFNKRHAKDSSKHHTAAVMPGQVPSNVHLPQPHNSYAPPFVPHGQ
YHPQFAPPPPYYGEPNLGAYSYYAAPPPHATYHQHTMPAISTPMSTNGMG
GGRSHGSPHGSASIPSEQNEVTSAITMENSKSYGDKQGPTNGGSTKTGKM
TQTQVPAQFYPTYYQQQPTAPVMYPAVSPMYGSYVYNQHPNQFNPAPSDY
TASKVFGAPHTEAFPHPFAMSVNPGIPAPQHGTSISPVAGNSG*
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spliced messenger RNA

>Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2532bp|location=Sequence derived from alignment at tig00000009_pilon:111464..113995+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCTTCACACCTTCGGCGTTCCATCGATGATCCCCCTTCACGCGC
AAGGCAGATAGCAAGCTCGTTTCGTCGGCGCAGTATAACACCCAACCCCA
CCACTTCCGCTCTCCCATCGAAGCGGCCCCCACCCGATTACCCGCATCCC
GATTCGCCACCCCGAGCAGTCATCCGTCGAACTGAGTCTTCCTCCTCAAT
GTCGGAATCTCCAGATTCAGAGACCAACCACAATCCCCCGTCATCCCCCT
CGCACACAGCTTCCAACCCCAGTCCTCCCGATCTCGTTGAGCACTCTGAC
GACCATCTGTACGAATCCGCACCAAAGCAGCCACAAGCACACGATTTTGT
CATAGTGCCCGCTGAGCATGTTGGTCTCATCATTGGTAAACACGGCGATA
CCATCAAGGCCATACAAAACGCCTCCAACGCAATTGTGTCCATGGATCGC
AGCTACCCCAGCCGCGACCGAAAGTTTCGTATCAGTGGTACTGAGGATGC
TGTCAGTCATTGTCGCACTCTAATTCGGCGCCGTCTTGAGGTTGTGCGCA
CTCGTTCAGACTCTCCGTTGGAGACTCGAGAGATGTGGATTCCGATGTCG
AAAATTGGGCTCGTCATTGGTGCTGGAGGTGTTACCATTCGGTCCATCAA
AGACAAAACTGGCGCTTATGCCACGGTCCATAACGATCAGGTTGAGGGAG
ATCGGAAACTGCTCACCATTCATGGCACAGCGCAGCAAACCACTCATGCC
CGCCAGTTAATTGTAGAGATCCTGCAAAGTGCGCCACTTGCACCTCCGCG
GGACTCTTCTCTTGGAGACGGTGATAACTCAACAGCGATGTATATCCCGC
GTGCGGCTGTTGGCTGTGTGATCGGCTCACGTGGCACTACACTACGATTA
TTGCACCAGAAAAGCGGTGCAACCATCAGAGTCGCTTCAGATGAGGAAGC
TGGTGATAGTCTCGAGAGGCAGATAATCATATCGGGGAGTATGGCAGCTG
TTGATCGCGCGCGCTCTATGATTCATTTCGTAATTCGCGAAGGTTCCTTG
CGTAACTTCGAGGAAGAGCGTCCAGACGTCCCTCACTCGCGACGGGATGA
TGTTCATCCTTTTGACAGTGTATCTAGGATTCGTGATATACGGCGCCGCG
CCTATTCGCAAGGGAGAAAAGAAGATTCCTTCATACTGTCCGCCGAGCAT
ATTGGCTTACTGATTGGCAAGAATGGCACAAACATACGTGAAATGCAGAA
CAGGTCAGGTGCAATTATCGAGGTTTCGGGCAAGAACGAGTCCGAAAGAG
ACAGCTCACATCGTACCGTTTCTATTTTCGGTTCTTCAACTGAAGTGAAG
ATCGCAAAGTTGCTCATCGAAGAAAAGATTGGCATCAGTCACGATGAAGA
ATGTCCCGAGGTAGAAGAACCAAACTCAGTGCTCGCGGCACAAGATCAAA
ACGCTCGGGACAAGGGGCAAAGCGAAGCTCAAGATGGCCAGTCAACCGGC
TCTTCGACTTCTGAAGAATCCCAGGCAGAAAAACGGCAGGACGATAAAGA
AAACATACCGTCTAAGGAAGTCCTGAAGGAATCTTCCACACGTGCGAAGC
CTCAACGGGTGTCTAAAACCATCAAAGCCATTTCGAACAAGAAACGAGAT
GCAGAAGAAAAGACCAAGGATGGCGAAGGACAGTCAGAAGCATCTTTGAC
AAACACCGCTGTTGAGAGCACCGGCGCGGTGTTGAAGAGAAACCACACGG
ACAGCAAACAGCGAAGAGTCAGTCAAAACTCTCAATCCCGCAATAATTCT
GGATCGAAGTCTACTGATTTCAATAAGAGGCATGCGAAGGATAGTTCGAA
GCATCATACAGCTGCCGTGATGCCAGGACAGGTTCCATCAAACGTGCATC
TACCCCAGCCACACAACTCCTACGCTCCTCCATTTGTGCCCCACGGACAA
TACCATCCTCAGTTTGCGCCTCCGCCCCCATACTACGGGGAGCCGAACTT
GGGGGCTTACTCCTACTATGCAGCACCTCCACCACACGCAACATACCATC
AGCATACCATGCCAGCCATATCCACCCCGATGTCCACCAACGGCATGGGA
GGGGGGCGCTCTCACGGTTCCCCCCATGGGTCCGCTTCAATCCCAAGTGA
GCAGAACGAAGTAACGTCCGCAATCACAATGGAAAACAGCAAGTCATATG
GGGACAAACAGGGACCAACAAATGGTGGATCCACGAAAACGGGGAAAATG
ACACAAACTCAGGTTCCAGCACAGTTTTATCCCACTTACTATCAACAACA
ACCTACCGCACCAGTCATGTATCCAGCAGTCTCACCCATGTACGGCAGCT
ATGTATATAATCAGCACCCAAATCAGTTCAATCCAGCACCTAGTGATTAC
ACGGCGAGTAAGGTTTTTGGAGCGCCCCATACGGAAGCGTTCCCGCACCC
TTTTGCGATGTCGGTGAATCCTGGAATTCCAGCACCGCAGCACGGGACAA
GTATATCTCCGGTTGCAGGGAACAGCGGATAG
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protein sequence of Ggra9896.t1

>Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=844bp
MPSSHLRRSIDDPPSRARQIASSFRRRSITPNPTTSALPSKRPPPDYPHP
DSPPRAVIRRTESSSSMSESPDSETNHNPPSSPSHTASNPSPPDLVEHSD
DHLYESAPKQPQAHDFVIVPAEHVGLIIGKHGDTIKAIQNASNAIVSMDR
SYPSRDRKFRISGTEDAVSHCRTLIRRRLEVVRTRSDSPLETREMWIPMS
KIGLVIGAGGVTIRSIKDKTGAYATVHNDQVEGDRKLLTIHGTAQQTTHA
RQLIVEILQSAPLAPPRDSSLGDGDNSTAMYIPRAAVGCVIGSRGTTLRL
LHQKSGATIRVASDEEAGDSLERQIIISGSMAAVDRARSMIHFVIREGSL
RNFEEERPDVPHSRRDDVHPFDSVSRIRDIRRRAYSQGRKEDSFILSAEH
IGLLIGKNGTNIREMQNRSGAIIEVSGKNESERDSSHRTVSIFGSSTEVK
IAKLLIEEKIGISHDEECPEVEEPNSVLAAQDQNARDKGQSEAQDGQSTG
SSTSEESQAEKRQDDKENIPSKEVLKESSTRAKPQRVSKTIKAISNKKRD
AEEKTKDGEGQSEASLTNTAVESTGAVLKRNHTDSKQRRVSQNSQSRNNS
GSKSTDFNKRHAKDSSKHHTAAVMPGQVPSNVHLPQPHNSYAPPFVPHGQ
YHPQFAPPPPYYGEPNLGAYSYYAAPPPHATYHQHTMPAISTPMSTNGMG
GGRSHGSPHGSASIPSEQNEVTSAITMENSKSYGDKQGPTNGGSTKTGKM
TQTQVPAQFYPTYYQQQPTAPVMYPAVSPMYGSYVYNQHPNQFNPAPSDY
TASKVFGAPHTEAFPHPFAMSVNPGIPAPQHGTSISPVAGNSG*
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mRNA from alignment at tig00000009_pilon:111464..113995+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2532bp|location=Sequence derived from alignment at tig00000009_pilon:111464..113995+ (Gracilaria gracilis GNS1m male)
ATGCCATCTTCACACCTTCGGCGTTCCATCGATGATCCCCCTTCACGCGC AAGGCAGATAGCAAGCTCGTTTCGTCGGCGCAGTATAACACCCAACCCCA CCACTTCCGCTCTCCCATCGAAGCGGCCCCCACCCGATTACCCGCATCCC GATTCGCCACCCCGAGCAGTCATCCGTCGAACTGAGTCTTCCTCCTCAAT GTCGGAATCTCCAGATTCAGAGACCAACCACAATCCCCCGTCATCCCCCT CGCACACAGCTTCCAACCCCAGTCCTCCCGATCTCGTTGAGCACTCTGAC GACCATCTGTACGAATCCGCACCAAAGCAGCCACAAGCACACGATTTTGT CATAGTGCCCGCTGAGCATGTTGGTCTCATCATTGGTAAACACGGCGATA CCATCAAGGCCATACAAAACGCCTCCAACGCAATTGTGTCCATGGATCGC AGCTACCCCAGCCGCGACCGAAAGTTTCGTATCAGTGGTACTGAGGATGC TGTCAGTCATTGTCGCACTCTAATTCGGCGCCGTCTTGAGGTTGTGCGCA CTCGTTCAGACTCTCCGTTGGAGACTCGAGAGATGTGGATTCCGATGTCG AAAATTGGGCTCGTCATTGGTGCTGGAGGTGTTACCATTCGGTCCATCAA AGACAAAACTGGCGCTTATGCCACGGTCCATAACGATCAGGTTGAGGGAG ATCGGAAACTGCTCACCATTCATGGCACAGCGCAGCAAACCACTCATGCC CGCCAGTTAATTGTAGAGATCCTGCAAAGTGCGCCACTTGCACCTCCGCG GGACTCTTCTCTTGGAGACGGTGATAACTCAACAGCGATGTATATCCCGC GTGCGGCTGTTGGCTGTGTGATCGGCTCACGTGGCACTACACTACGATTA TTGCACCAGAAAAGCGGTGCAACCATCAGAGTCGCTTCAGATGAGGAAGC TGGTGATAGTCTCGAGAGGCAGATAATCATATCGGGGAGTATGGCAGCTG TTGATCGCGCGCGCTCTATGATTCATTTCGTAATTCGCGAAGGTTCCTTG CGTAACTTCGAGGAAGAGCGTCCAGACGTCCCTCACTCGCGACGGGATGA TGTTCATCCTTTTGACAGTGTATCTAGGATTCGTGATATACGGCGCCGCG CCTATTCGCAAGGGAGAAAAGAAGATTCCTTCATACTGTCCGCCGAGCAT ATTGGCTTACTGATTGGCAAGAATGGCACAAACATACGTGAAATGCAGAA CAGGTCAGGTGCAATTATCGAGGTTTCGGGCAAGAACGAGTCCGAAAGAG ACAGCTCACATCGTACCGTTTCTATTTTCGGTTCTTCAACTGAAGTGAAG ATCGCAAAGTTGCTCATCGAAGAAAAGATTGGCATCAGTCACGATGAAGA ATGTCCCGAGGTAGAAGAACCAAACTCAGTGCTCGCGGCACAAGATCAAA ACGCTCGGGACAAGGGGCAAAGCGAAGCTCAAGATGGCCAGTCAACCGGC TCTTCGACTTCTGAAGAATCCCAGGCAGAAAAACGGCAGGACGATAAAGA AAACATACCGTCTAAGGAAGTCCTGAAGGAATCTTCCACACGTGCGAAGC CTCAACGGGTGTCTAAAACCATCAAAGCCATTTCGAACAAGAAACGAGAT GCAGAAGAAAAGACCAAGGATGGCGAAGGACAGTCAGAAGCATCTTTGAC AAACACCGCTGTTGAGAGCACCGGCGCGGTGTTGAAGAGAAACCACACGG ACAGCAAACAGCGAAGAGTCAGTCAAAACTCTCAATCCCGCAATAATTCT GGATCGAAGTCTACTGATTTCAATAAGAGGCATGCGAAGGATAGTTCGAA GCATCATACAGCTGCCGTGATGCCAGGACAGGTTCCATCAAACGTGCATC TACCCCAGCCACACAACTCCTACGCTCCTCCATTTGTGCCCCACGGACAA TACCATCCTCAGTTTGCGCCTCCGCCCCCATACTACGGGGAGCCGAACTT GGGGGCTTACTCCTACTATGCAGCACCTCCACCACACGCAACATACCATC AGCATACCATGCCAGCCATATCCACCCCGATGTCCACCAACGGCATGGGA GGGGGGCGCTCTCACGGTTCCCCCCATGGGTCCGCTTCAATCCCAAGTGA GCAGAACGAAGTAACGTCCGCAATCACAATGGAAAACAGCAAGTCATATG GGGACAAACAGGGACCAACAAATGGTGGATCCACGAAAACGGGGAAAATG ACACAAACTCAGGTTCCAGCACAGTTTTATCCCACTTACTATCAACAACA ACCTACCGCACCAGTCATGTATCCAGCAGTCTCACCCATGTACGGCAGCT ATGTATATAATCAGCACCCAAATCAGTTCAATCCAGCACCTAGTGATTAC ACGGCGAGTAAGGTTTTTGGAGCGCCCCATACGGAAGCGTTCCCGCACCC TTTTGCGATGTCGGTGAATCCTGGAATTCCAGCACCGCAGCACGGGACAA GTATATCTCCGGTTGCAGGGAACAGCGGATAG
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Coding sequence (CDS) from alignment at tig00000009_pilon:111464..113995+

>Ggra9896.t1 ID=Ggra9896.t1|Name=Ggra9896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2532bp|location=Sequence derived from alignment at tig00000009_pilon:111464..113995+ (Gracilaria gracilis GNS1m male)
ATGCCATCTTCACACCTTCGGCGTTCCATCGATGATCCCCCTTCACGCGC
AAGGCAGATAGCAAGCTCGTTTCGTCGGCGCAGTATAACACCCAACCCCA
CCACTTCCGCTCTCCCATCGAAGCGGCCCCCACCCGATTACCCGCATCCC
GATTCGCCACCCCGAGCAGTCATCCGTCGAACTGAGTCTTCCTCCTCAAT
GTCGGAATCTCCAGATTCAGAGACCAACCACAATCCCCCGTCATCCCCCT
CGCACACAGCTTCCAACCCCAGTCCTCCCGATCTCGTTGAGCACTCTGAC
GACCATCTGTACGAATCCGCACCAAAGCAGCCACAAGCACACGATTTTGT
CATAGTGCCCGCTGAGCATGTTGGTCTCATCATTGGTAAACACGGCGATA
CCATCAAGGCCATACAAAACGCCTCCAACGCAATTGTGTCCATGGATCGC
AGCTACCCCAGCCGCGACCGAAAGTTTCGTATCAGTGGTACTGAGGATGC
TGTCAGTCATTGTCGCACTCTAATTCGGCGCCGTCTTGAGGTTGTGCGCA
CTCGTTCAGACTCTCCGTTGGAGACTCGAGAGATGTGGATTCCGATGTCG
AAAATTGGGCTCGTCATTGGTGCTGGAGGTGTTACCATTCGGTCCATCAA
AGACAAAACTGGCGCTTATGCCACGGTCCATAACGATCAGGTTGAGGGAG
ATCGGAAACTGCTCACCATTCATGGCACAGCGCAGCAAACCACTCATGCC
CGCCAGTTAATTGTAGAGATCCTGCAAAGTGCGCCACTTGCACCTCCGCG
GGACTCTTCTCTTGGAGACGGTGATAACTCAACAGCGATGTATATCCCGC
GTGCGGCTGTTGGCTGTGTGATCGGCTCACGTGGCACTACACTACGATTA
TTGCACCAGAAAAGCGGTGCAACCATCAGAGTCGCTTCAGATGAGGAAGC
TGGTGATAGTCTCGAGAGGCAGATAATCATATCGGGGAGTATGGCAGCTG
TTGATCGCGCGCGCTCTATGATTCATTTCGTAATTCGCGAAGGTTCCTTG
CGTAACTTCGAGGAAGAGCGTCCAGACGTCCCTCACTCGCGACGGGATGA
TGTTCATCCTTTTGACAGTGTATCTAGGATTCGTGATATACGGCGCCGCG
CCTATTCGCAAGGGAGAAAAGAAGATTCCTTCATACTGTCCGCCGAGCAT
ATTGGCTTACTGATTGGCAAGAATGGCACAAACATACGTGAAATGCAGAA
CAGGTCAGGTGCAATTATCGAGGTTTCGGGCAAGAACGAGTCCGAAAGAG
ACAGCTCACATCGTACCGTTTCTATTTTCGGTTCTTCAACTGAAGTGAAG
ATCGCAAAGTTGCTCATCGAAGAAAAGATTGGCATCAGTCACGATGAAGA
ATGTCCCGAGGTAGAAGAACCAAACTCAGTGCTCGCGGCACAAGATCAAA
ACGCTCGGGACAAGGGGCAAAGCGAAGCTCAAGATGGCCAGTCAACCGGC
TCTTCGACTTCTGAAGAATCCCAGGCAGAAAAACGGCAGGACGATAAAGA
AAACATACCGTCTAAGGAAGTCCTGAAGGAATCTTCCACACGTGCGAAGC
CTCAACGGGTGTCTAAAACCATCAAAGCCATTTCGAACAAGAAACGAGAT
GCAGAAGAAAAGACCAAGGATGGCGAAGGACAGTCAGAAGCATCTTTGAC
AAACACCGCTGTTGAGAGCACCGGCGCGGTGTTGAAGAGAAACCACACGG
ACAGCAAACAGCGAAGAGTCAGTCAAAACTCTCAATCCCGCAATAATTCT
GGATCGAAGTCTACTGATTTCAATAAGAGGCATGCGAAGGATAGTTCGAA
GCATCATACAGCTGCCGTGATGCCAGGACAGGTTCCATCAAACGTGCATC
TACCCCAGCCACACAACTCCTACGCTCCTCCATTTGTGCCCCACGGACAA
TACCATCCTCAGTTTGCGCCTCCGCCCCCATACTACGGGGAGCCGAACTT
GGGGGCTTACTCCTACTATGCAGCACCTCCACCACACGCAACATACCATC
AGCATACCATGCCAGCCATATCCACCCCGATGTCCACCAACGGCATGGGA
GGGGGGCGCTCTCACGGTTCCCCCCATGGGTCCGCTTCAATCCCAAGTGA
GCAGAACGAAGTAACGTCCGCAATCACAATGGAAAACAGCAAGTCATATG
GGGACAAACAGGGACCAACAAATGGTGGATCCACGAAAACGGGGAAAATG
ACACAAACTCAGGTTCCAGCACAGTTTTATCCCACTTACTATCAACAACA
ACCTACCGCACCAGTCATGTATCCAGCAGTCTCACCCATGTACGGCAGCT
ATGTATATAATCAGCACCCAAATCAGTTCAATCCAGCACCTAGTGATTAC
ACGGCGAGTAAGGTTTTTGGAGCGCCCCATACGGAAGCGTTCCCGCACCC
TTTTGCGATGTCGGTGAATCCTGGAATTCCAGCACCGCAGCACGGGACAA
GTATATCTCCGGTTGCAGGGAACAGCGGATAG
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