Ggra9544.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9544.t1
Unique NameGgra9544.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Homology
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BLAST of Ggra9544.t1 vs. uniprot
Match: A0A2V3IH52 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH52_9FLOR)

HSP 1 Score: 110 bits (276), Expect = 2.010e-29
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 0 
Query:    7 APFVSRKQLNDHINKQVVVAGTVVNVNPNTIVLDTGADSKITVLRNQPPNMQPEVGTKLLVRGLVKPDLAVVESPTFPASDVGTNF 92
            +PFV++KQLN H+N++VVVAG V+N    T++LD    + ITV RNQPP M  E GTKLLVRG+VKPDL+V ESP+FPA+DVG NF
Sbjct:    9 SPFVTQKQLNAHMNQEVVVAGKVLNATQTTLLLDGENSTTITVHRNQPPTMMIETGTKLLVRGMVKPDLSVAESPSFPATDVGDNF 94
The following BLAST results are available for this feature:
BLAST of Ggra9544.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH522.010e-2962.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 4..114
e-value: 2.7E-15
score: 58.3
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 5..107
e-value: 2.8E-8
score: 34.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 5..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000150_piloncontigtig00000150_pilon:18564..18985 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9544.t1Ggra9544.t1Gracilaria gracilis GNS1m malemRNAtig00000150_pilon 18564..18985 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9544.t1 ID=Ggra9544.t1|Name=Ggra9544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MQQAQPAPFVSRKQLNDHINKQVVVAGTVVNVNPNTIVLDTGADSKITVL
RNQPPNMQPEVGTKLLVRGLVKPDLAVVESPTFPASDVGTNFDLSLYNEA
TNVTNHINYANMFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013970Rfa2
IPR012340NA-bd_OB-fold