Ggra9541.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9541.t1
Unique NameGgra9541.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000150_piloncontigtig00000150_pilon:9012..10175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX40024
PFAMsS1
Max annot lvl2759|Eukaryota
KEGG koko:K02945
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0016020,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0097159,GO:1901363
Evalue2.04e-124
EggNOG OGsCOG0539@1|root,2QUY8@2759|Eukaryota
DescriptionRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9541Ggra9541Gracilaria gracilis GNS1m malegenetig00000150_pilon 9012..10175 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9541.t1.stop1Ggra9541.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000150_pilon 9012..9014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9541.t1.CDS1Ggra9541.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000150_pilon 9012..10175 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9541.t1.exon1Ggra9541.t1.exon1Gracilaria gracilis GNS1m maleexontig00000150_pilon 9012..10175 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9541.t1.start1Ggra9541.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000150_pilon 10173..10175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9541.t1Ggra9541.t1Gracilaria gracilis GNS1m malepolypeptidetig00000150_pilon 9012..10175 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9541.t1 ID=Ggra9541.t1|Name=Ggra9541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MAFVNSFFGAAVATPQSSSKPRSCSRAAPAPTRMIVTARMANTENLSRFD
RMRLRFGAPAVSEETSGFTYSDFEQAMSKFEYSFENGDICTGRVSQYERN
GALVDIGAKASAYCPLVEMSMIKVDKPEHALTIGEDREFQIISREDANGQ
LRVSIRRIEYARAWERVAQLQAEDVTVHAVVVSINRGGALVHIEGLRAFL
PSSHTSIRTPREELIGMELPLKFLEVDSEKGRLVVSHRRAIVEKQMTSLV
AGEVVEGVVRGIKPYGAFIDIGGVSGLLHVSQISHDHVGDIGAVLPDGTV
IKCMIINQDKEKGRISLSTKTLEPEPGDMLRDSKMVYEQAEEMAARYHKR
LEEERKAAADVADDIVSTLDMAPLEDIGVDPVPAEAA*
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spliced messenger RNA

>Ggra9541.t1 ID=Ggra9541.t1|Name=Ggra9541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000150_pilon:9012..10175- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGTGAACTCCTTCTTCGGCGCCGCCGTCGCCACGCCACAGTC
TTCATCGAAGCCGCGAAGCTGCTCGCGCGCTGCCCCTGCCCCCACTCGGA
TGATCGTCACTGCTCGCATGGCCAATACAGAGAACCTGTCTAGGTTTGAT
CGCATGCGATTGAGATTCGGGGCGCCGGCTGTGTCCGAGGAGACGTCGGG
CTTCACGTATAGCGATTTCGAGCAGGCCATGTCCAAGTTCGAATACAGCT
TTGAGAACGGCGATATTTGCACGGGTCGCGTCAGTCAGTATGAGCGGAAT
GGAGCTCTTGTGGACATCGGTGCCAAGGCCTCTGCGTACTGCCCGCTGGT
TGAGATGTCTATGATCAAGGTTGACAAGCCGGAGCATGCGCTTACAATTG
GCGAGGATAGAGAGTTTCAAATTATCTCTAGAGAGGATGCCAATGGTCAG
CTCAGAGTATCTATACGTCGCATTGAGTACGCTCGCGCGTGGGAAAGAGT
TGCCCAGCTTCAGGCTGAGGATGTCACTGTGCACGCTGTTGTCGTTTCTA
TCAATCGCGGCGGTGCTCTCGTACATATAGAAGGTTTGCGAGCATTCCTT
CCGTCCTCACATACATCTATTCGTACCCCGCGAGAAGAACTTATAGGCAT
GGAATTGCCTCTCAAGTTCTTAGAGGTCGATAGTGAGAAGGGAAGACTTG
TAGTGTCTCACCGCCGTGCAATTGTCGAGAAACAGATGACGAGTCTAGTT
GCTGGCGAAGTTGTTGAGGGTGTCGTTCGTGGTATCAAGCCATATGGTGC
TTTCATTGATATTGGCGGTGTTTCTGGATTGCTACATGTTTCTCAGATAT
CCCATGATCATGTGGGAGATATCGGAGCCGTTTTGCCCGATGGAACGGTT
ATTAAGTGCATGATTATCAACCAAGACAAGGAGAAGGGTCGAATTTCTCT
CAGCACAAAGACTTTGGAGCCTGAGCCAGGAGATATGCTTCGTGATTCTA
AAATGGTTTATGAACAGGCCGAGGAAATGGCAGCCCGGTACCATAAGCGC
TTGGAAGAAGAGCGGAAAGCGGCTGCCGATGTTGCAGATGATATTGTTTC
AACATTAGACATGGCCCCATTGGAAGATATTGGCGTTGACCCTGTCCCAG
CGGAAGCAGCATGA
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protein sequence of Ggra9541.t1

>Ggra9541.t1 ID=Ggra9541.t1|Name=Ggra9541.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MAFVNSFFGAAVATPQSSSKPRSCSRAAPAPTRMIVTARMANTENLSRFD
RMRLRFGAPAVSEETSGFTYSDFEQAMSKFEYSFENGDICTGRVSQYERN
GALVDIGAKASAYCPLVEMSMIKVDKPEHALTIGEDREFQIISREDANGQ
LRVSIRRIEYARAWERVAQLQAEDVTVHAVVVSINRGGALVHIEGLRAFL
PSSHTSIRTPREELIGMELPLKFLEVDSEKGRLVVSHRRAIVEKQMTSLV
AGEVVEGVVRGIKPYGAFIDIGGVSGLLHVSQISHDHVGDIGAVLPDGTV
IKCMIINQDKEKGRISLSTKTLEPEPGDMLRDSKMVYEQAEEMAARYHKR
LEEERKAAADVADDIVSTLDMAPLEDIGVDPVPAEAA*
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mRNA from alignment at tig00000150_pilon:9012..10175-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9541.t1 ID=Ggra9541.t1|Name=Ggra9541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000150_pilon:9012..10175- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTGAACTCCTTCTTCGGCGCCGCCGTCGCCACGCCACAGTC
TTCATCGAAGCCGCGAAGCTGCTCGCGCGCTGCCCCTGCCCCCACTCGGA
TGATCGTCACTGCTCGCATGGCCAATACAGAGAACCTGTCTAGGTTTGAT
CGCATGCGATTGAGATTCGGGGCGCCGGCTGTGTCCGAGGAGACGTCGGG
CTTCACGTATAGCGATTTCGAGCAGGCCATGTCCAAGTTCGAATACAGCT
TTGAGAACGGCGATATTTGCACGGGTCGCGTCAGTCAGTATGAGCGGAAT
GGAGCTCTTGTGGACATCGGTGCCAAGGCCTCTGCGTACTGCCCGCTGGT
TGAGATGTCTATGATCAAGGTTGACAAGCCGGAGCATGCGCTTACAATTG
GCGAGGATAGAGAGTTTCAAATTATCTCTAGAGAGGATGCCAATGGTCAG
CTCAGAGTATCTATACGTCGCATTGAGTACGCTCGCGCGTGGGAAAGAGT
TGCCCAGCTTCAGGCTGAGGATGTCACTGTGCACGCTGTTGTCGTTTCTA
TCAATCGCGGCGGTGCTCTCGTACATATAGAAGGTTTGCGAGCATTCCTT
CCGTCCTCACATACATCTATTCGTACCCCGCGAGAAGAACTTATAGGCAT
GGAATTGCCTCTCAAGTTCTTAGAGGTCGATAGTGAGAAGGGAAGACTTG
TAGTGTCTCACCGCCGTGCAATTGTCGAGAAACAGATGACGAGTCTAGTT
GCTGGCGAAGTTGTTGAGGGTGTCGTTCGTGGTATCAAGCCATATGGTGC
TTTCATTGATATTGGCGGTGTTTCTGGATTGCTACATGTTTCTCAGATAT
CCCATGATCATGTGGGAGATATCGGAGCCGTTTTGCCCGATGGAACGGTT
ATTAAGTGCATGATTATCAACCAAGACAAGGAGAAGGGTCGAATTTCTCT
CAGCACAAAGACTTTGGAGCCTGAGCCAGGAGATATGCTTCGTGATTCTA
AAATGGTTTATGAACAGGCCGAGGAAATGGCAGCCCGGTACCATAAGCGC
TTGGAAGAAGAGCGGAAAGCGGCTGCCGATGTTGCAGATGATATTGTTTC
AACATTAGACATGGCCCCATTGGAAGATATTGGCGTTGACCCTGTCCCAG
CGGAAGCAGCATGA
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Coding sequence (CDS) from alignment at tig00000150_pilon:9012..10175-

>Ggra9541.t1 ID=Ggra9541.t1|Name=Ggra9541.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000150_pilon:9012..10175- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTGAACTCCTTCTTCGGCGCCGCCGTCGCCACGCCACAGTC
TTCATCGAAGCCGCGAAGCTGCTCGCGCGCTGCCCCTGCCCCCACTCGGA
TGATCGTCACTGCTCGCATGGCCAATACAGAGAACCTGTCTAGGTTTGAT
CGCATGCGATTGAGATTCGGGGCGCCGGCTGTGTCCGAGGAGACGTCGGG
CTTCACGTATAGCGATTTCGAGCAGGCCATGTCCAAGTTCGAATACAGCT
TTGAGAACGGCGATATTTGCACGGGTCGCGTCAGTCAGTATGAGCGGAAT
GGAGCTCTTGTGGACATCGGTGCCAAGGCCTCTGCGTACTGCCCGCTGGT
TGAGATGTCTATGATCAAGGTTGACAAGCCGGAGCATGCGCTTACAATTG
GCGAGGATAGAGAGTTTCAAATTATCTCTAGAGAGGATGCCAATGGTCAG
CTCAGAGTATCTATACGTCGCATTGAGTACGCTCGCGCGTGGGAAAGAGT
TGCCCAGCTTCAGGCTGAGGATGTCACTGTGCACGCTGTTGTCGTTTCTA
TCAATCGCGGCGGTGCTCTCGTACATATAGAAGGTTTGCGAGCATTCCTT
CCGTCCTCACATACATCTATTCGTACCCCGCGAGAAGAACTTATAGGCAT
GGAATTGCCTCTCAAGTTCTTAGAGGTCGATAGTGAGAAGGGAAGACTTG
TAGTGTCTCACCGCCGTGCAATTGTCGAGAAACAGATGACGAGTCTAGTT
GCTGGCGAAGTTGTTGAGGGTGTCGTTCGTGGTATCAAGCCATATGGTGC
TTTCATTGATATTGGCGGTGTTTCTGGATTGCTACATGTTTCTCAGATAT
CCCATGATCATGTGGGAGATATCGGAGCCGTTTTGCCCGATGGAACGGTT
ATTAAGTGCATGATTATCAACCAAGACAAGGAGAAGGGTCGAATTTCTCT
CAGCACAAAGACTTTGGAGCCTGAGCCAGGAGATATGCTTCGTGATTCTA
AAATGGTTTATGAACAGGCCGAGGAAATGGCAGCCCGGTACCATAAGCGC
TTGGAAGAAGAGCGGAAAGCGGCTGCCGATGTTGCAGATGATATTGTTTC
AACATTAGACATGGCCCCATTGGAAGATATTGGCGTTGACCCTGTCCCAG
CGGAAGCAGCATGA
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