Ggra1140.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1140.t1
Unique NameGgra1140.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:64188..64976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue4.68e-09
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1140Ggra1140Gracilaria gracilis GNS1m malegenetig00000140_pilon 64188..64976 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1140.t1.start1Ggra1140.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 64188..64190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1140.t1.CDS1Ggra1140.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 64188..64976 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1140.t1.exon1Ggra1140.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 64188..64976 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1140.t1.stop1Ggra1140.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 64974..64976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1140.t1Ggra1140.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 64188..64976 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1140.t1 ID=Ggra1140.t1|Name=Ggra1140.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MSRALPDYFRSPIEVNIEKAWMLMHDYGTSFPADACSATSNQDLFPQVLT
KWGTIQKRSLPLTNELVQAGMKIMNGPGILSMVRLMTSDTEWLSVLSDEL
AMARDILPVDETEFENLFVTYTMRLTERASQYNVPLALVHGDLNIGNVTH
NWRDQINFIDMGAVCISYPFRDAVMFATMCDATEDDLQFYFDMWAEYEST
ERMRELYDLVKVLEWVFTLFVFYKQYITAEESKRTSSRSELRSSLRVLLQ
GLVFQLQKACKC*
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spliced messenger RNA

>Ggra1140.t1 ID=Ggra1140.t1|Name=Ggra1140.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000140_pilon:64188..64976+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGAGCTCTCCCAGATTACTTTAGGAGCCCAATTGAGGTCAATAT
AGAGAAAGCATGGATGCTAATGCATGACTACGGAACAAGTTTTCCTGCGG
ATGCATGCTCGGCAACCTCTAATCAGGATCTCTTCCCCCAAGTGCTCACT
AAATGGGGAACGATTCAAAAGCGATCACTTCCGTTGACCAACGAGCTCGT
TCAAGCAGGTATGAAAATAATGAATGGGCCAGGAATCTTGAGCATGGTGC
GACTAATGACGTCAGACACTGAGTGGCTCTCTGTACTTTCTGATGAACTC
GCAATGGCGAGAGACATTCTGCCGGTAGACGAGACCGAGTTTGAGAACCT
GTTTGTCACGTATACGATGCGATTAACTGAAAGAGCTTCACAGTACAATG
TCCCACTGGCACTAGTACATGGCGATCTTAACATAGGAAATGTCACCCAC
AACTGGAGGGATCAGATCAACTTCATTGATATGGGTGCAGTATGTATCTC
GTACCCATTCAGGGATGCTGTCATGTTTGCCACCATGTGTGATGCAACAG
AAGATGATCTCCAATTCTATTTTGATATGTGGGCGGAATACGAGAGTACT
GAAAGAATGCGGGAACTATATGATCTTGTAAAGGTTTTAGAATGGGTGTT
CACTCTTTTCGTGTTTTACAAGCAGTACATCACTGCTGAGGAAAGCAAAA
GGACATCTAGTCGCTCAGAGCTGCGCTCTTCATTGCGGGTTTTGCTTCAA
GGTCTTGTATTCCAGTTGCAGAAGGCCTGCAAATGTTAA
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protein sequence of Ggra1140.t1

>Ggra1140.t1 ID=Ggra1140.t1|Name=Ggra1140.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MSRALPDYFRSPIEVNIEKAWMLMHDYGTSFPADACSATSNQDLFPQVLT
KWGTIQKRSLPLTNELVQAGMKIMNGPGILSMVRLMTSDTEWLSVLSDEL
AMARDILPVDETEFENLFVTYTMRLTERASQYNVPLALVHGDLNIGNVTH
NWRDQINFIDMGAVCISYPFRDAVMFATMCDATEDDLQFYFDMWAEYEST
ERMRELYDLVKVLEWVFTLFVFYKQYITAEESKRTSSRSELRSSLRVLLQ
GLVFQLQKACKC*
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mRNA from alignment at tig00000140_pilon:64188..64976+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1140.t1 ID=Ggra1140.t1|Name=Ggra1140.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000140_pilon:64188..64976+ (Gracilaria gracilis GNS1m male)
ATGTCTAGAGCTCTCCCAGATTACTTTAGGAGCCCAATTGAGGTCAATAT
AGAGAAAGCATGGATGCTAATGCATGACTACGGAACAAGTTTTCCTGCGG
ATGCATGCTCGGCAACCTCTAATCAGGATCTCTTCCCCCAAGTGCTCACT
AAATGGGGAACGATTCAAAAGCGATCACTTCCGTTGACCAACGAGCTCGT
TCAAGCAGGTATGAAAATAATGAATGGGCCAGGAATCTTGAGCATGGTGC
GACTAATGACGTCAGACACTGAGTGGCTCTCTGTACTTTCTGATGAACTC
GCAATGGCGAGAGACATTCTGCCGGTAGACGAGACCGAGTTTGAGAACCT
GTTTGTCACGTATACGATGCGATTAACTGAAAGAGCTTCACAGTACAATG
TCCCACTGGCACTAGTACATGGCGATCTTAACATAGGAAATGTCACCCAC
AACTGGAGGGATCAGATCAACTTCATTGATATGGGTGCAGTATGTATCTC
GTACCCATTCAGGGATGCTGTCATGTTTGCCACCATGTGTGATGCAACAG
AAGATGATCTCCAATTCTATTTTGATATGTGGGCGGAATACGAGAGTACT
GAAAGAATGCGGGAACTATATGATCTTGTAAAGGTTTTAGAATGGGTGTT
CACTCTTTTCGTGTTTTACAAGCAGTACATCACTGCTGAGGAAAGCAAAA
GGACATCTAGTCGCTCAGAGCTGCGCTCTTCATTGCGGGTTTTGCTTCAA
GGTCTTGTATTCCAGTTGCAGAAGGCCTGCAAATGTTAA
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Coding sequence (CDS) from alignment at tig00000140_pilon:64188..64976+

>Ggra1140.t1 ID=Ggra1140.t1|Name=Ggra1140.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000140_pilon:64188..64976+ (Gracilaria gracilis GNS1m male)
ATGTCTAGAGCTCTCCCAGATTACTTTAGGAGCCCAATTGAGGTCAATAT
AGAGAAAGCATGGATGCTAATGCATGACTACGGAACAAGTTTTCCTGCGG
ATGCATGCTCGGCAACCTCTAATCAGGATCTCTTCCCCCAAGTGCTCACT
AAATGGGGAACGATTCAAAAGCGATCACTTCCGTTGACCAACGAGCTCGT
TCAAGCAGGTATGAAAATAATGAATGGGCCAGGAATCTTGAGCATGGTGC
GACTAATGACGTCAGACACTGAGTGGCTCTCTGTACTTTCTGATGAACTC
GCAATGGCGAGAGACATTCTGCCGGTAGACGAGACCGAGTTTGAGAACCT
GTTTGTCACGTATACGATGCGATTAACTGAAAGAGCTTCACAGTACAATG
TCCCACTGGCACTAGTACATGGCGATCTTAACATAGGAAATGTCACCCAC
AACTGGAGGGATCAGATCAACTTCATTGATATGGGTGCAGTATGTATCTC
GTACCCATTCAGGGATGCTGTCATGTTTGCCACCATGTGTGATGCAACAG
AAGATGATCTCCAATTCTATTTTGATATGTGGGCGGAATACGAGAGTACT
GAAAGAATGCGGGAACTATATGATCTTGTAAAGGTTTTAGAATGGGTGTT
CACTCTTTTCGTGTTTTACAAGCAGTACATCACTGCTGAGGAAAGCAAAA
GGACATCTAGTCGCTCAGAGCTGCGCTCTTCATTGCGGGTTTTGCTTCAA
GGTCTTGTATTCCAGTTGCAGAAGGCCTGCAAATGTTAA
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