Ggra1139.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1139.t1
Unique NameGgra1139.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:62461..63237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1139Ggra1139Gracilaria gracilis GNS1m malegenetig00000140_pilon 62461..63237 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1139.t1.stop1Ggra1139.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 62461..62463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1139.t1.CDS1Ggra1139.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 62461..63237 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1139.t1.exon1Ggra1139.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 62461..63237 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1139.t1.start1Ggra1139.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 63235..63237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1139.t1Ggra1139.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 62461..63237 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1139.t1 ID=Ggra1139.t1|Name=Ggra1139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MTVAFVFDADSNQHMLRIERTAEFSITNLRVQVMINSLSRHVLHLAPLRP
DLQFEHSVQVFKSIVGDALNTLGAEFEGSLTLFREGSDSGILASPYGKIY
ILYSQLLPREVSQDIMASALTEQLRALPLERNSSGAPWVHDGENGFSRNG
SAVIATIGLNRIAHGTLLIMVVVLWLLRLVMSKWFGVGFEEAGYLVSQMV
LEDYVEVRSSQESNAPKWHAAELRLTRFALGHTGHFGYTRTDEEQVVVSS
FEGCDHVI*
back to top

spliced messenger RNA

>Ggra1139.t1 ID=Ggra1139.t1|Name=Ggra1139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000140_pilon:62461..63237- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTTGCGTTTGTCTTTGACGCAGACAGTAATCAGCATATGTTGCG
CATCGAACGTACGGCCGAGTTCAGTATTACCAACTTGCGGGTGCAAGTGA
TGATCAACTCGCTTAGTCGTCACGTCCTTCATCTGGCACCATTGCGACCA
GACCTGCAGTTCGAGCACAGTGTGCAAGTATTCAAATCGATCGTTGGTGA
CGCTCTGAACACGTTGGGTGCCGAGTTTGAAGGCAGCCTTACTCTATTCC
GTGAAGGTAGCGACTCCGGCATACTCGCCTCCCCTTATGGCAAGATCTAC
ATATTGTATTCTCAACTACTGCCACGAGAGGTGTCCCAGGATATTATGGC
CAGCGCGCTCACCGAGCAGTTGAGAGCACTGCCGTTGGAAAGAAACTCAT
CCGGTGCGCCCTGGGTACATGATGGCGAAAATGGGTTCTCAAGGAATGGC
TCTGCAGTAATAGCTACCATAGGCCTTAATCGCATTGCGCATGGCACCTT
GCTCATTATGGTGGTAGTTTTGTGGCTTTTGCGATTAGTGATGTCGAAAT
GGTTCGGCGTCGGATTCGAAGAAGCAGGGTATCTTGTATCTCAGATGGTT
CTGGAAGATTATGTTGAAGTTCGCTCCAGTCAAGAGTCGAACGCTCCTAA
ATGGCATGCGGCGGAACTGCGTCTAACGCGTTTTGCGCTTGGACATACAG
GTCATTTCGGATATACACGTACGGATGAAGAACAGGTTGTGGTCTCTAGC
TTTGAGGGGTGTGATCACGTGATCTAA
back to top

protein sequence of Ggra1139.t1

>Ggra1139.t1 ID=Ggra1139.t1|Name=Ggra1139.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MTVAFVFDADSNQHMLRIERTAEFSITNLRVQVMINSLSRHVLHLAPLRP
DLQFEHSVQVFKSIVGDALNTLGAEFEGSLTLFREGSDSGILASPYGKIY
ILYSQLLPREVSQDIMASALTEQLRALPLERNSSGAPWVHDGENGFSRNG
SAVIATIGLNRIAHGTLLIMVVVLWLLRLVMSKWFGVGFEEAGYLVSQMV
LEDYVEVRSSQESNAPKWHAAELRLTRFALGHTGHFGYTRTDEEQVVVSS
FEGCDHVI*
back to top

mRNA from alignment at tig00000140_pilon:62461..63237-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1139.t1 ID=Ggra1139.t1|Name=Ggra1139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000140_pilon:62461..63237- (Gracilaria gracilis GNS1m male)
ATGACCGTTGCGTTTGTCTTTGACGCAGACAGTAATCAGCATATGTTGCG
CATCGAACGTACGGCCGAGTTCAGTATTACCAACTTGCGGGTGCAAGTGA
TGATCAACTCGCTTAGTCGTCACGTCCTTCATCTGGCACCATTGCGACCA
GACCTGCAGTTCGAGCACAGTGTGCAAGTATTCAAATCGATCGTTGGTGA
CGCTCTGAACACGTTGGGTGCCGAGTTTGAAGGCAGCCTTACTCTATTCC
GTGAAGGTAGCGACTCCGGCATACTCGCCTCCCCTTATGGCAAGATCTAC
ATATTGTATTCTCAACTACTGCCACGAGAGGTGTCCCAGGATATTATGGC
CAGCGCGCTCACCGAGCAGTTGAGAGCACTGCCGTTGGAAAGAAACTCAT
CCGGTGCGCCCTGGGTACATGATGGCGAAAATGGGTTCTCAAGGAATGGC
TCTGCAGTAATAGCTACCATAGGCCTTAATCGCATTGCGCATGGCACCTT
GCTCATTATGGTGGTAGTTTTGTGGCTTTTGCGATTAGTGATGTCGAAAT
GGTTCGGCGTCGGATTCGAAGAAGCAGGGTATCTTGTATCTCAGATGGTT
CTGGAAGATTATGTTGAAGTTCGCTCCAGTCAAGAGTCGAACGCTCCTAA
ATGGCATGCGGCGGAACTGCGTCTAACGCGTTTTGCGCTTGGACATACAG
GTCATTTCGGATATACACGTACGGATGAAGAACAGGTTGTGGTCTCTAGC
TTTGAGGGGTGTGATCACGTGATCTAA
back to top

Coding sequence (CDS) from alignment at tig00000140_pilon:62461..63237-

>Ggra1139.t1 ID=Ggra1139.t1|Name=Ggra1139.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000140_pilon:62461..63237- (Gracilaria gracilis GNS1m male)
ATGACCGTTGCGTTTGTCTTTGACGCAGACAGTAATCAGCATATGTTGCG
CATCGAACGTACGGCCGAGTTCAGTATTACCAACTTGCGGGTGCAAGTGA
TGATCAACTCGCTTAGTCGTCACGTCCTTCATCTGGCACCATTGCGACCA
GACCTGCAGTTCGAGCACAGTGTGCAAGTATTCAAATCGATCGTTGGTGA
CGCTCTGAACACGTTGGGTGCCGAGTTTGAAGGCAGCCTTACTCTATTCC
GTGAAGGTAGCGACTCCGGCATACTCGCCTCCCCTTATGGCAAGATCTAC
ATATTGTATTCTCAACTACTGCCACGAGAGGTGTCCCAGGATATTATGGC
CAGCGCGCTCACCGAGCAGTTGAGAGCACTGCCGTTGGAAAGAAACTCAT
CCGGTGCGCCCTGGGTACATGATGGCGAAAATGGGTTCTCAAGGAATGGC
TCTGCAGTAATAGCTACCATAGGCCTTAATCGCATTGCGCATGGCACCTT
GCTCATTATGGTGGTAGTTTTGTGGCTTTTGCGATTAGTGATGTCGAAAT
GGTTCGGCGTCGGATTCGAAGAAGCAGGGTATCTTGTATCTCAGATGGTT
CTGGAAGATTATGTTGAAGTTCGCTCCAGTCAAGAGTCGAACGCTCCTAA
ATGGCATGCGGCGGAACTGCGTCTAACGCGTTTTGCGCTTGGACATACAG
GTCATTTCGGATATACACGTACGGATGAAGAACAGGTTGTGGTCTCTAGC
TTTGAGGGGTGTGATCACGTGATCTAA
back to top