Ggra10887.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10887.t1
Unique NameGgra10887.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:395903..396744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10887Ggra10887Gracilaria gracilis GNS1m malegenetig00000125_pilon 395903..396744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10887.t1Ggra10887.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 395903..396744 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10887.t1.stop1Ggra10887.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 395903..395905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10887.t1.CDS1Ggra10887.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 395903..396421 -
Ggra10887.t1.CDS2Ggra10887.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000125_pilon 396508..396744 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10887.t1.exon1Ggra10887.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 395903..396421 -
Ggra10887.t1.exon2Ggra10887.t1.exon2Gracilaria gracilis GNS1m maleexontig00000125_pilon 396508..396744 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10887.t1.intron1Ggra10887.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000125_pilon 396422..396507 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10887.t1.start1Ggra10887.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 396742..396744 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10887.t1 ID=Ggra10887.t1|Name=Ggra10887.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MSSAVSSSESIFTVRHGRLPPRKTKERMLEEEDCIEMLTPKKLRLGTNAK
AAASNEEYGLFPEDMSFGHEAAGTENDPFHCGEKVWKRRAPPQFTRVGEL
EKRLHGSGGAWSGEESDLDVVELSSDGNQFDVSSEYSRCEVLEVRKKNDD
YLDDSDSLSLGSRSQCRTGTVHGSTARVGASWRMWVKELEKTRPDSFDGP
DARLEVRERARQGQSVYERIGVTGDNCLGLRKVLATYVVKHKDSFGRPEK
T*
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spliced messenger RNA

>Ggra10887.t1 ID=Ggra10887.t1|Name=Ggra10887.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000125_pilon:395903..396744- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGGCCGTCTCGTCCTCTGAATCAATCTTCACAGTTCGGCATGG
TCGTCTTCCGCCTCGCAAGACGAAGGAGAGGATGTTGGAGGAGGAGGATT
GCATTGAAATGCTGACGCCGAAAAAGTTGCGACTGGGAACGAATGCCAAA
GCTGCGGCATCTAACGAAGAGTATGGGTTATTTCCTGAAGATATGTCGTT
CGGGCATGAAGCAGCTGGTACAGAAAATGACCCTTTCCACTGTGGAGAGA
AGGTTTGGAAACGTAGAGCGCCGCCGCAATTCACGCGTGTCGGAGAATTG
GAAAAGAGACTCCATGGGAGTGGTGGGGCTTGGAGTGGTGAAGAGTCGGA
CTTGGATGTCGTGGAATTGTCTTCTGATGGCAATCAGTTTGATGTTTCTT
CCGAATATAGCAGATGTGAAGTGCTCGAGGTTCGTAAGAAGAACGATGAT
TATTTAGATGACAGTGATAGTCTAAGTCTGGGATCTCGTTCTCAGTGCAG
GACTGGAACGGTTCATGGGTCGACGGCACGCGTTGGTGCTTCGTGGAGAA
TGTGGGTGAAGGAACTTGAGAAAACGAGACCGGACTCCTTCGATGGTCCT
GACGCCCGTCTCGAAGTGAGAGAAAGAGCCCGTCAAGGACAGAGTGTCTA
TGAGAGGATTGGTGTTACAGGAGATAACTGTCTTGGTCTGAGGAAGGTAC
TCGCTACCTATGTCGTCAAACACAAGGACTCTTTTGGGAGGCCAGAAAAG
ACGTAG
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protein sequence of Ggra10887.t1

>Ggra10887.t1 ID=Ggra10887.t1|Name=Ggra10887.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MSSAVSSSESIFTVRHGRLPPRKTKERMLEEEDCIEMLTPKKLRLGTNAK
AAASNEEYGLFPEDMSFGHEAAGTENDPFHCGEKVWKRRAPPQFTRVGEL
EKRLHGSGGAWSGEESDLDVVELSSDGNQFDVSSEYSRCEVLEVRKKNDD
YLDDSDSLSLGSRSQCRTGTVHGSTARVGASWRMWVKELEKTRPDSFDGP
DARLEVRERARQGQSVYERIGVTGDNCLGLRKVLATYVVKHKDSFGRPEK
T*
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mRNA from alignment at tig00000125_pilon:395903..396744-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10887.t1 ID=Ggra10887.t1|Name=Ggra10887.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=842bp|location=Sequence derived from alignment at tig00000125_pilon:395903..396744- (Gracilaria gracilis GNS1m male)
ATGTCATCGGCCGTCTCGTCCTCTGAATCAATCTTCACAGTTCGGCATGG
TCGTCTTCCGCCTCGCAAGACGAAGGAGAGGATGTTGGAGGAGGAGGATT
GCATTGAAATGCTGACGCCGAAAAAGTTGCGACTGGGAACGAATGCCAAA
GCTGCGGCATCTAACGAAGAGTATGGGTTATTTCCTGAAGATATGTCGTT
CGGGCATGAAGCAGCTGGTACAGAAAATGACCCTTTCGTCATTAATTTGC
TCGAAGACCGGGAGAGTTCAATGGTTAAAAGCAGCCGAGTACACCACAGA
ATCAAAAGGCTTCCGCGCGGAAGCACTGTGGAGAGAAGGTTTGGAAACGT
AGAGCGCCGCCGCAATTCACGCGTGTCGGAGAATTGGAAAAGAGACTCCA
TGGGAGTGGTGGGGCTTGGAGTGGTGAAGAGTCGGACTTGGATGTCGTGG
AATTGTCTTCTGATGGCAATCAGTTTGATGTTTCTTCCGAATATAGCAGA
TGTGAAGTGCTCGAGGTTCGTAAGAAGAACGATGATTATTTAGATGACAG
TGATAGTCTAAGTCTGGGATCTCGTTCTCAGTGCAGGACTGGAACGGTTC
ATGGGTCGACGGCACGCGTTGGTGCTTCGTGGAGAATGTGGGTGAAGGAA
CTTGAGAAAACGAGACCGGACTCCTTCGATGGTCCTGACGCCCGTCTCGA
AGTGAGAGAAAGAGCCCGTCAAGGACAGAGTGTCTATGAGAGGATTGGTG
TTACAGGAGATAACTGTCTTGGTCTGAGGAAGGTACTCGCTACCTATGTC
GTCAAACACAAGGACTCTTTTGGGAGGCCAGAAAAGACGTAG
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Coding sequence (CDS) from alignment at tig00000125_pilon:395903..396744-

>Ggra10887.t1 ID=Ggra10887.t1|Name=Ggra10887.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000125_pilon:395903..396744- (Gracilaria gracilis GNS1m male)
ATGTCATCGGCCGTCTCGTCCTCTGAATCAATCTTCACAGTTCGGCATGG
TCGTCTTCCGCCTCGCAAGACGAAGGAGAGGATGTTGGAGGAGGAGGATT
GCATTGAAATGCTGACGCCGAAAAAGTTGCGACTGGGAACGAATGCCAAA
GCTGCGGCATCTAACGAAGAGTATGGGTTATTTCCTGAAGATATGTCGTT
CGGGCATGAAGCAGCTGGTACAGAAAATGACCCTTTCCACTGTGGAGAGA
AGGTTTGGAAACGTAGAGCGCCGCCGCAATTCACGCGTGTCGGAGAATTG
GAAAAGAGACTCCATGGGAGTGGTGGGGCTTGGAGTGGTGAAGAGTCGGA
CTTGGATGTCGTGGAATTGTCTTCTGATGGCAATCAGTTTGATGTTTCTT
CCGAATATAGCAGATGTGAAGTGCTCGAGGTTCGTAAGAAGAACGATGAT
TATTTAGATGACAGTGATAGTCTAAGTCTGGGATCTCGTTCTCAGTGCAG
GACTGGAACGGTTCATGGGTCGACGGCACGCGTTGGTGCTTCGTGGAGAA
TGTGGGTGAAGGAACTTGAGAAAACGAGACCGGACTCCTTCGATGGTCCT
GACGCCCGTCTCGAAGTGAGAGAAAGAGCCCGTCAAGGACAGAGTGTCTA
TGAGAGGATTGGTGTTACAGGAGATAACTGTCTTGGTCTGAGGAAGGTAC
TCGCTACCTATGTCGTCAAACACAAGGACTCTTTTGGGAGGCCAGAAAAG
ACGTAG
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