Ggra4671.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4671.t1
Unique NameGgra4671.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:49756..50313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4671Ggra4671Gracilaria gracilis GNS1m malegenetig00000124_pilon 49756..50313 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4671.t1.start1Ggra4671.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 49756..49758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4671.t1.CDS1Ggra4671.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 49756..50313 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4671.t1.exon1Ggra4671.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 49756..50313 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4671.t1.stop1Ggra4671.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 50311..50313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4671.t1Ggra4671.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 49756..50313 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4671.t1 ID=Ggra4671.t1|Name=Ggra4671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MDVLTSLASAKARTELQHSITDSKQFEKVLADCFTNGSRAAAETASIFLC
KQATTINRAQHISNALKTLPSAVSVGSAPPLAYACAFLATEFDSEACAAP
LRAFSFTRTQVKVAALEVITDFMVQRLESDEQDCSSLLQRIGGVLRGSIG
DISELNLYHLVKGVSKRAEYVNEESEMELLAFDLS*
back to top

spliced messenger RNA

>Ggra4671.t1 ID=Ggra4671.t1|Name=Ggra4671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000124_pilon:49756..50313+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGCTCACAAGCCTTGCCAGCGCGAAGGCTCGAACGGAATTGCA
GCATTCCATCACCGATTCGAAACAATTTGAGAAGGTTCTCGCTGACTGTT
TTACCAATGGGTCGAGAGCAGCTGCAGAGACCGCGTCGATATTTCTATGC
AAGCAAGCGACGACAATAAATAGAGCGCAGCACATAAGCAACGCGTTGAA
GACTCTTCCATCTGCCGTTTCCGTTGGAAGTGCTCCGCCGTTAGCATATG
CATGTGCCTTTCTAGCCACTGAGTTCGATAGTGAAGCATGTGCTGCACCC
CTTCGAGCCTTTTCGTTCACAAGGACACAGGTGAAGGTTGCAGCACTGGA
AGTAATTACAGATTTCATGGTTCAGAGATTGGAATCCGATGAACAAGACT
GTTCTTCTCTGCTTCAAAGAATAGGAGGTGTTCTTCGTGGATCCATAGGC
GATATTTCTGAACTGAATCTCTATCACCTTGTGAAAGGAGTATCGAAACG
CGCAGAATATGTAAATGAAGAGAGCGAAATGGAACTTCTTGCTTTTGATT
TGAGCTAA
back to top

protein sequence of Ggra4671.t1

>Ggra4671.t1 ID=Ggra4671.t1|Name=Ggra4671.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MDVLTSLASAKARTELQHSITDSKQFEKVLADCFTNGSRAAAETASIFLC
KQATTINRAQHISNALKTLPSAVSVGSAPPLAYACAFLATEFDSEACAAP
LRAFSFTRTQVKVAALEVITDFMVQRLESDEQDCSSLLQRIGGVLRGSIG
DISELNLYHLVKGVSKRAEYVNEESEMELLAFDLS*
back to top

mRNA from alignment at tig00000124_pilon:49756..50313+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4671.t1 ID=Ggra4671.t1|Name=Ggra4671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000124_pilon:49756..50313+ (Gracilaria gracilis GNS1m male)
ATGGACGTGCTCACAAGCCTTGCCAGCGCGAAGGCTCGAACGGAATTGCA
GCATTCCATCACCGATTCGAAACAATTTGAGAAGGTTCTCGCTGACTGTT
TTACCAATGGGTCGAGAGCAGCTGCAGAGACCGCGTCGATATTTCTATGC
AAGCAAGCGACGACAATAAATAGAGCGCAGCACATAAGCAACGCGTTGAA
GACTCTTCCATCTGCCGTTTCCGTTGGAAGTGCTCCGCCGTTAGCATATG
CATGTGCCTTTCTAGCCACTGAGTTCGATAGTGAAGCATGTGCTGCACCC
CTTCGAGCCTTTTCGTTCACAAGGACACAGGTGAAGGTTGCAGCACTGGA
AGTAATTACAGATTTCATGGTTCAGAGATTGGAATCCGATGAACAAGACT
GTTCTTCTCTGCTTCAAAGAATAGGAGGTGTTCTTCGTGGATCCATAGGC
GATATTTCTGAACTGAATCTCTATCACCTTGTGAAAGGAGTATCGAAACG
CGCAGAATATGTAAATGAAGAGAGCGAAATGGAACTTCTTGCTTTTGATT
TGAGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000124_pilon:49756..50313+

>Ggra4671.t1 ID=Ggra4671.t1|Name=Ggra4671.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000124_pilon:49756..50313+ (Gracilaria gracilis GNS1m male)
ATGGACGTGCTCACAAGCCTTGCCAGCGCGAAGGCTCGAACGGAATTGCA
GCATTCCATCACCGATTCGAAACAATTTGAGAAGGTTCTCGCTGACTGTT
TTACCAATGGGTCGAGAGCAGCTGCAGAGACCGCGTCGATATTTCTATGC
AAGCAAGCGACGACAATAAATAGAGCGCAGCACATAAGCAACGCGTTGAA
GACTCTTCCATCTGCCGTTTCCGTTGGAAGTGCTCCGCCGTTAGCATATG
CATGTGCCTTTCTAGCCACTGAGTTCGATAGTGAAGCATGTGCTGCACCC
CTTCGAGCCTTTTCGTTCACAAGGACACAGGTGAAGGTTGCAGCACTGGA
AGTAATTACAGATTTCATGGTTCAGAGATTGGAATCCGATGAACAAGACT
GTTCTTCTCTGCTTCAAAGAATAGGAGGTGTTCTTCGTGGATCCATAGGC
GATATTTCTGAACTGAATCTCTATCACCTTGTGAAAGGAGTATCGAAACG
CGCAGAATATGTAAATGAAGAGAGCGAAATGGAACTTCTTGCTTTTGATT
TGAGCTAA
back to top