Ggra2806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2806.t1
Unique NameGgra2806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:337746..338585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2806Ggra2806Gracilaria gracilis GNS1m malegenetig00000123_pilon 337746..338585 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2806.t1.stop1Ggra2806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 337746..337748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2806.t1.CDS1Ggra2806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 337746..338585 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2806.t1.exon1Ggra2806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 337746..338585 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2806.t1.start1Ggra2806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 338583..338585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2806.t1Ggra2806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 337746..338585 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2806.t1 ID=Ggra2806.t1|Name=Ggra2806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MNISDGYDREHIEFDDDYFYGEAFRSLSMQHTIVVFAVDKYSSENDNQVV
EGPMYMMFTVDSNNMPPYDLELYVFAICDLPRVETTGKEFKIVSVMCSIA
NLKREITLDAEWRAAQPATQPLKVMEKSYPGLNLSELGIRSIMVLDLART
LSQDACGDSYVAYLPMSQISRTSVTIICTLGGITISSLLAAALSLLISWK
TFNWNGSYQRLLNVALSSDSIELKSRWKAATAPNANVVIEHSSGNLERTT
YDIHAVPRDAMSNPVPKAEVNKIEAFGTG*
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spliced messenger RNA

>Ggra2806.t1 ID=Ggra2806.t1|Name=Ggra2806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000123_pilon:337746..338585- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATCTCCGATGGCTATGATAGGGAACATATTGAATTTGACGATGA
TTATTTCTATGGCGAAGCATTCCGCTCATTATCTATGCAACATACCATAG
TAGTATTCGCTGTCGACAAATACTCCTCCGAAAACGACAATCAGGTTGTA
GAAGGTCCGATGTATATGATGTTTACTGTTGATAGCAATAACATGCCGCC
ATATGATTTGGAATTGTACGTGTTCGCTATATGTGATCTACCCCGAGTTG
AGACTACCGGAAAAGAATTCAAAATTGTCAGCGTAATGTGTTCAATAGCA
AACCTCAAAAGAGAAATCACTTTGGATGCAGAATGGAGAGCAGCTCAACC
TGCCACTCAGCCTTTGAAGGTCATGGAGAAGTCATACCCAGGTCTGAATC
TTTCAGAACTCGGAATACGGTCGATCATGGTACTCGATTTAGCAAGGACC
CTTAGTCAAGATGCTTGTGGTGATTCATATGTTGCATACCTTCCAATGTC
CCAGATTTCCCGAACATCCGTTACCATTATTTGTACTCTTGGTGGAATTA
CGATTTCCAGTTTGTTAGCAGCGGCATTATCACTTCTCATCTCATGGAAA
ACGTTCAATTGGAACGGTTCTTATCAAAGGTTACTAAACGTGGCATTAAG
CTCGGATTCAATTGAACTCAAAAGCCGCTGGAAAGCAGCCACTGCTCCTA
ATGCCAACGTTGTCATTGAGCATTCAAGTGGAAATCTGGAAAGAACGACT
TATGATATTCACGCCGTTCCAAGAGATGCTATGTCAAACCCTGTGCCGAA
GGCTGAAGTAAATAAGATTGAAGCGTTTGGAACAGGTTGA
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protein sequence of Ggra2806.t1

>Ggra2806.t1 ID=Ggra2806.t1|Name=Ggra2806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MNISDGYDREHIEFDDDYFYGEAFRSLSMQHTIVVFAVDKYSSENDNQVV
EGPMYMMFTVDSNNMPPYDLELYVFAICDLPRVETTGKEFKIVSVMCSIA
NLKREITLDAEWRAAQPATQPLKVMEKSYPGLNLSELGIRSIMVLDLART
LSQDACGDSYVAYLPMSQISRTSVTIICTLGGITISSLLAAALSLLISWK
TFNWNGSYQRLLNVALSSDSIELKSRWKAATAPNANVVIEHSSGNLERTT
YDIHAVPRDAMSNPVPKAEVNKIEAFGTG*
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mRNA from alignment at tig00000123_pilon:337746..338585-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2806.t1 ID=Ggra2806.t1|Name=Ggra2806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000123_pilon:337746..338585- (Gracilaria gracilis GNS1m male)
ATGAATATCTCCGATGGCTATGATAGGGAACATATTGAATTTGACGATGA
TTATTTCTATGGCGAAGCATTCCGCTCATTATCTATGCAACATACCATAG
TAGTATTCGCTGTCGACAAATACTCCTCCGAAAACGACAATCAGGTTGTA
GAAGGTCCGATGTATATGATGTTTACTGTTGATAGCAATAACATGCCGCC
ATATGATTTGGAATTGTACGTGTTCGCTATATGTGATCTACCCCGAGTTG
AGACTACCGGAAAAGAATTCAAAATTGTCAGCGTAATGTGTTCAATAGCA
AACCTCAAAAGAGAAATCACTTTGGATGCAGAATGGAGAGCAGCTCAACC
TGCCACTCAGCCTTTGAAGGTCATGGAGAAGTCATACCCAGGTCTGAATC
TTTCAGAACTCGGAATACGGTCGATCATGGTACTCGATTTAGCAAGGACC
CTTAGTCAAGATGCTTGTGGTGATTCATATGTTGCATACCTTCCAATGTC
CCAGATTTCCCGAACATCCGTTACCATTATTTGTACTCTTGGTGGAATTA
CGATTTCCAGTTTGTTAGCAGCGGCATTATCACTTCTCATCTCATGGAAA
ACGTTCAATTGGAACGGTTCTTATCAAAGGTTACTAAACGTGGCATTAAG
CTCGGATTCAATTGAACTCAAAAGCCGCTGGAAAGCAGCCACTGCTCCTA
ATGCCAACGTTGTCATTGAGCATTCAAGTGGAAATCTGGAAAGAACGACT
TATGATATTCACGCCGTTCCAAGAGATGCTATGTCAAACCCTGTGCCGAA
GGCTGAAGTAAATAAGATTGAAGCGTTTGGAACAGGTTGA
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Coding sequence (CDS) from alignment at tig00000123_pilon:337746..338585-

>Ggra2806.t1 ID=Ggra2806.t1|Name=Ggra2806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000123_pilon:337746..338585- (Gracilaria gracilis GNS1m male)
ATGAATATCTCCGATGGCTATGATAGGGAACATATTGAATTTGACGATGA
TTATTTCTATGGCGAAGCATTCCGCTCATTATCTATGCAACATACCATAG
TAGTATTCGCTGTCGACAAATACTCCTCCGAAAACGACAATCAGGTTGTA
GAAGGTCCGATGTATATGATGTTTACTGTTGATAGCAATAACATGCCGCC
ATATGATTTGGAATTGTACGTGTTCGCTATATGTGATCTACCCCGAGTTG
AGACTACCGGAAAAGAATTCAAAATTGTCAGCGTAATGTGTTCAATAGCA
AACCTCAAAAGAGAAATCACTTTGGATGCAGAATGGAGAGCAGCTCAACC
TGCCACTCAGCCTTTGAAGGTCATGGAGAAGTCATACCCAGGTCTGAATC
TTTCAGAACTCGGAATACGGTCGATCATGGTACTCGATTTAGCAAGGACC
CTTAGTCAAGATGCTTGTGGTGATTCATATGTTGCATACCTTCCAATGTC
CCAGATTTCCCGAACATCCGTTACCATTATTTGTACTCTTGGTGGAATTA
CGATTTCCAGTTTGTTAGCAGCGGCATTATCACTTCTCATCTCATGGAAA
ACGTTCAATTGGAACGGTTCTTATCAAAGGTTACTAAACGTGGCATTAAG
CTCGGATTCAATTGAACTCAAAAGCCGCTGGAAAGCAGCCACTGCTCCTA
ATGCCAACGTTGTCATTGAGCATTCAAGTGGAAATCTGGAAAGAACGACT
TATGATATTCACGCCGTTCCAAGAGATGCTATGTCAAACCCTGTGCCGAA
GGCTGAAGTAAATAAGATTGAAGCGTTTGGAACAGGTTGA
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