Ggra2830.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2830.t1
Unique Name	Ggra2830.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	833

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:406278..408776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2830	Ggra2830	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 406278..408776 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2830.t1.stop1	Ggra2830.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 406278..406280 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2830.t1.CDS1	Ggra2830.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 406278..408776 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2830.t1.exon1	Ggra2830.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 406278..408776 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2830.t1.start1	Ggra2830.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 408774..408776 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2830.t1	Ggra2830.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 406278..408776 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:406278..408776-
coding sequence from alignment at tig00000123_pilon:406278..408776-

mRNA sequence

>Ggra2830.t1 ID=Ggra2830.t1|Name=Ggra2830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=833bp
MAPFEPSTWAEVSEALANVRLCSDPPQFVTQVRSFTQAPHRYLTQPPPSE
LRGERAPQRPPVRRDDPQSSPSSLRRAPHASQPALRTDALFDDLLGLGRV
DALDGSLARRQLVAKPAFPLACAPSVINPSSSLFEPAQYLATVHAHSSSL
QLRQGKNVLAQLQQKLHAQKERYREQKYVFATYVHAHFELAKQSTAHMSP
FTDRTSAVHCRTRFLRAENTLRNRYDDLLQRETKLERLHAALTVYKRYEW
LFSLGNTLRSAANQSVTTIEDALADYSRANSWLAAQPPQSLQVLRDDIHQ
GFQLLLNEIVQRLSNVHTSNADTSRLVAALFSVNNEQKLTSILSRRIHTA
ENALNAAIAAAELPSLLSEDTHTDTELHDLVTSASDGLHVALAHVWRLGR
LLAEHDRWIRVVDSHLTRLCDMYARLIREDVMHDVSVITRPIVNEISSTR
KKAVEELRIPDASVATLERVSNSVTAAFLQSLTRAVRHGTERLASHEVHH
NTVGASSAKFLRAVVVEALVQVDTAWVRAKEVDGDVVVITEDIDKEGDEG
QDGAEAPSVDRLCRTCVQAPLLFVSIVERMMTDYKDNETAALRLAVCCTE
MVENVLKALERKTGLGSPYDSRATQRQLHHVARRIGEIKDRALKAYVALV
FEPLHRMAGALVRQPDDKLDDSVSRTVPIKIGGVSRAARELVLRLALVMI
TTGKRTSHPTLLGGIVIKLIAGIGQTLLKTLGTDKLAYNRAAQLWVDVMF
IQGMVTKGASADTGGLQASLDGFSRVKERAVQAVLADGFSFSLADMNTLR
EDVVENELQDCSMICECFKETWNMVTSKSDED*

spliced messenger RNA

>Ggra2830.t1 ID=Ggra2830.t1|Name=Ggra2830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2499bp|location=Sequence derived from alignment at tig00000123_pilon:406278..408776- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTTCGAGCCGTCGACGTGGGCGGAGGTGTCCGAGGCGTTGGC
CAACGTGCGCCTGTGCTCGGATCCGCCGCAGTTCGTCACGCAGGTGCGTT
CGTTCACACAGGCGCCGCACCGATACCTCACGCAGCCGCCGCCTTCGGAG
CTGCGCGGCGAACGCGCGCCGCAACGCCCGCCCGTGCGACGCGATGATCC
GCAGTCGTCGCCGTCGTCGCTGCGTCGCGCGCCACACGCGTCGCAGCCCG
CGCTGCGCACGGACGCTTTGTTCGACGATCTGCTGGGGCTGGGCAGGGTG
GACGCGCTGGACGGCTCGCTCGCGCGCCGACAGCTCGTGGCCAAGCCCGC
TTTCCCGCTCGCTTGCGCTCCGTCTGTCATCAACCCTTCCAGCTCGCTGT
TTGAGCCGGCGCAGTATCTGGCCACCGTTCATGCGCACTCCAGTTCGCTG
CAGCTCAGGCAGGGCAAGAATGTGTTGGCGCAGCTGCAGCAAAAGTTGCA
CGCGCAGAAGGAACGATATCGCGAGCAAAAGTATGTGTTTGCTACTTATG
TTCACGCCCATTTTGAACTGGCCAAGCAATCCACCGCCCACATGTCGCCG
TTCACCGATCGCACGTCGGCTGTGCACTGTCGCACCCGCTTTCTTCGCGC
CGAGAACACCTTGCGCAATCGCTACGATGACTTGCTGCAGCGAGAGACCA
AGCTGGAGCGTCTGCACGCCGCGCTCACCGTGTATAAGCGCTACGAGTGG
CTATTCTCGCTGGGAAACACGCTGCGTTCAGCCGCCAATCAAAGCGTTAC
CACCATTGAGGATGCGCTTGCCGACTATTCCAGGGCCAATTCTTGGCTCG
CTGCGCAGCCGCCGCAGTCGTTGCAGGTGCTTCGCGACGACATTCACCAA
GGCTTTCAGCTTCTTCTTAATGAGATTGTGCAACGATTGTCTAATGTTCA
TACTTCTAACGCCGATACTTCCCGCTTGGTCGCCGCGCTGTTTTCTGTCA
ACAACGAGCAAAAGTTGACGTCCATTCTGTCGCGCCGCATACACACCGCG
GAGAACGCGCTCAACGCTGCTATTGCCGCCGCTGAGTTGCCCTCTCTGCT
CTCCGAAGATACTCACACCGATACCGAACTCCATGACTTGGTCACCAGCG
CGAGTGACGGATTGCATGTGGCGCTGGCGCACGTGTGGAGGTTGGGTCGC
CTGCTTGCAGAACACGATCGATGGATACGGGTCGTCGATTCTCACCTTAC
CCGCTTGTGTGATATGTATGCGCGGCTGATACGGGAGGATGTCATGCATG
ACGTGAGTGTCATCACCAGGCCGATTGTGAATGAGATTTCGAGCACGCGC
AAGAAGGCGGTGGAGGAGCTGCGCATCCCGGACGCGTCTGTCGCCACCCT
GGAACGGGTTAGCAACTCTGTGACCGCCGCATTCTTGCAGTCGCTTACGC
GCGCGGTGCGGCACGGCACGGAGAGGTTGGCGTCTCATGAAGTGCATCAC
AATACGGTTGGAGCGTCATCGGCCAAATTCTTGCGCGCAGTGGTGGTGGA
GGCGCTTGTTCAGGTCGACACGGCATGGGTTCGAGCGAAGGAGGTGGATG
GCGATGTCGTTGTCATCACAGAAGATATAGACAAAGAAGGGGACGAAGGG
CAAGATGGTGCCGAGGCGCCTAGCGTGGACCGATTGTGTCGGACGTGCGT
GCAAGCGCCGCTTCTGTTTGTCAGCATCGTGGAACGAATGATGACGGATT
ACAAGGATAATGAAACTGCAGCTCTACGATTGGCGGTGTGTTGTACAGAG
ATGGTTGAAAACGTGTTGAAGGCCCTTGAGCGGAAGACTGGCTTGGGCTC
ACCATACGACTCGCGCGCTACGCAAAGGCAGTTGCATCATGTTGCTCGCA
GGATTGGCGAGATTAAGGACAGGGCATTGAAGGCATATGTGGCACTTGTC
TTCGAGCCGTTGCACAGGATGGCAGGCGCTTTGGTGAGGCAACCAGATGA
CAAGTTGGACGATTCTGTTAGTCGAACAGTGCCGATTAAGATCGGTGGCG
TATCCAGAGCTGCTCGCGAACTGGTGCTGCGACTGGCGTTGGTGATGATT
ACCACTGGGAAACGGACGTCGCATCCTACTCTTTTAGGTGGTATTGTAAT
CAAGTTGATTGCGGGCATTGGACAGACGCTGCTCAAGACTTTGGGGACAG
ATAAACTTGCATATAATAGGGCGGCGCAGTTGTGGGTGGACGTGATGTTT
ATTCAAGGAATGGTTACGAAAGGAGCAAGCGCAGATACCGGTGGTCTGCA
GGCTTCTCTAGATGGGTTTTCGAGAGTGAAGGAACGGGCTGTACAGGCGG
TTTTGGCAGACGGATTCAGTTTCAGCTTGGCTGATATGAATACATTGAGG
GAGGACGTTGTGGAGAATGAACTGCAAGACTGCTCCATGATCTGTGAGTG
TTTTAAGGAGACATGGAACATGGTGACCTCTAAGAGCGACGAAGATTAG

protein sequence of Ggra2830.t1

>Ggra2830.t1 ID=Ggra2830.t1|Name=Ggra2830.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=833bp
MAPFEPSTWAEVSEALANVRLCSDPPQFVTQVRSFTQAPHRYLTQPPPSE
LRGERAPQRPPVRRDDPQSSPSSLRRAPHASQPALRTDALFDDLLGLGRV
DALDGSLARRQLVAKPAFPLACAPSVINPSSSLFEPAQYLATVHAHSSSL
QLRQGKNVLAQLQQKLHAQKERYREQKYVFATYVHAHFELAKQSTAHMSP
FTDRTSAVHCRTRFLRAENTLRNRYDDLLQRETKLERLHAALTVYKRYEW
LFSLGNTLRSAANQSVTTIEDALADYSRANSWLAAQPPQSLQVLRDDIHQ
GFQLLLNEIVQRLSNVHTSNADTSRLVAALFSVNNEQKLTSILSRRIHTA
ENALNAAIAAAELPSLLSEDTHTDTELHDLVTSASDGLHVALAHVWRLGR
LLAEHDRWIRVVDSHLTRLCDMYARLIREDVMHDVSVITRPIVNEISSTR
KKAVEELRIPDASVATLERVSNSVTAAFLQSLTRAVRHGTERLASHEVHH
NTVGASSAKFLRAVVVEALVQVDTAWVRAKEVDGDVVVITEDIDKEGDEG
QDGAEAPSVDRLCRTCVQAPLLFVSIVERMMTDYKDNETAALRLAVCCTE
MVENVLKALERKTGLGSPYDSRATQRQLHHVARRIGEIKDRALKAYVALV
FEPLHRMAGALVRQPDDKLDDSVSRTVPIKIGGVSRAARELVLRLALVMI
TTGKRTSHPTLLGGIVIKLIAGIGQTLLKTLGTDKLAYNRAAQLWVDVMF
IQGMVTKGASADTGGLQASLDGFSRVKERAVQAVLADGFSFSLADMNTLR
EDVVENELQDCSMICECFKETWNMVTSKSDED*

mRNA from alignment at tig00000123_pilon:406278..408776-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2830.t1 ID=Ggra2830.t1|Name=Ggra2830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2499bp|location=Sequence derived from alignment at tig00000123_pilon:406278..408776- (Gracilaria gracilis GNS1m male)
ATGGCGCCGTTCGAGCCGTCGACGTGGGCGGAGGTGTCCGAGGCGTTGGC
CAACGTGCGCCTGTGCTCGGATCCGCCGCAGTTCGTCACGCAGGTGCGTT
CGTTCACACAGGCGCCGCACCGATACCTCACGCAGCCGCCGCCTTCGGAG
CTGCGCGGCGAACGCGCGCCGCAACGCCCGCCCGTGCGACGCGATGATCC
GCAGTCGTCGCCGTCGTCGCTGCGTCGCGCGCCACACGCGTCGCAGCCCG
CGCTGCGCACGGACGCTTTGTTCGACGATCTGCTGGGGCTGGGCAGGGTG
GACGCGCTGGACGGCTCGCTCGCGCGCCGACAGCTCGTGGCCAAGCCCGC
TTTCCCGCTCGCTTGCGCTCCGTCTGTCATCAACCCTTCCAGCTCGCTGT
TTGAGCCGGCGCAGTATCTGGCCACCGTTCATGCGCACTCCAGTTCGCTG
CAGCTCAGGCAGGGCAAGAATGTGTTGGCGCAGCTGCAGCAAAAGTTGCA
CGCGCAGAAGGAACGATATCGCGAGCAAAAGTATGTGTTTGCTACTTATG
TTCACGCCCATTTTGAACTGGCCAAGCAATCCACCGCCCACATGTCGCCG
TTCACCGATCGCACGTCGGCTGTGCACTGTCGCACCCGCTTTCTTCGCGC
CGAGAACACCTTGCGCAATCGCTACGATGACTTGCTGCAGCGAGAGACCA
AGCTGGAGCGTCTGCACGCCGCGCTCACCGTGTATAAGCGCTACGAGTGG
CTATTCTCGCTGGGAAACACGCTGCGTTCAGCCGCCAATCAAAGCGTTAC
CACCATTGAGGATGCGCTTGCCGACTATTCCAGGGCCAATTCTTGGCTCG
CTGCGCAGCCGCCGCAGTCGTTGCAGGTGCTTCGCGACGACATTCACCAA
GGCTTTCAGCTTCTTCTTAATGAGATTGTGCAACGATTGTCTAATGTTCA
TACTTCTAACGCCGATACTTCCCGCTTGGTCGCCGCGCTGTTTTCTGTCA
ACAACGAGCAAAAGTTGACGTCCATTCTGTCGCGCCGCATACACACCGCG
GAGAACGCGCTCAACGCTGCTATTGCCGCCGCTGAGTTGCCCTCTCTGCT
CTCCGAAGATACTCACACCGATACCGAACTCCATGACTTGGTCACCAGCG
CGAGTGACGGATTGCATGTGGCGCTGGCGCACGTGTGGAGGTTGGGTCGC
CTGCTTGCAGAACACGATCGATGGATACGGGTCGTCGATTCTCACCTTAC
CCGCTTGTGTGATATGTATGCGCGGCTGATACGGGAGGATGTCATGCATG
ACGTGAGTGTCATCACCAGGCCGATTGTGAATGAGATTTCGAGCACGCGC
AAGAAGGCGGTGGAGGAGCTGCGCATCCCGGACGCGTCTGTCGCCACCCT
GGAACGGGTTAGCAACTCTGTGACCGCCGCATTCTTGCAGTCGCTTACGC
GCGCGGTGCGGCACGGCACGGAGAGGTTGGCGTCTCATGAAGTGCATCAC
AATACGGTTGGAGCGTCATCGGCCAAATTCTTGCGCGCAGTGGTGGTGGA
GGCGCTTGTTCAGGTCGACACGGCATGGGTTCGAGCGAAGGAGGTGGATG
GCGATGTCGTTGTCATCACAGAAGATATAGACAAAGAAGGGGACGAAGGG
CAAGATGGTGCCGAGGCGCCTAGCGTGGACCGATTGTGTCGGACGTGCGT
GCAAGCGCCGCTTCTGTTTGTCAGCATCGTGGAACGAATGATGACGGATT
ACAAGGATAATGAAACTGCAGCTCTACGATTGGCGGTGTGTTGTACAGAG
ATGGTTGAAAACGTGTTGAAGGCCCTTGAGCGGAAGACTGGCTTGGGCTC
ACCATACGACTCGCGCGCTACGCAAAGGCAGTTGCATCATGTTGCTCGCA
GGATTGGCGAGATTAAGGACAGGGCATTGAAGGCATATGTGGCACTTGTC
TTCGAGCCGTTGCACAGGATGGCAGGCGCTTTGGTGAGGCAACCAGATGA
CAAGTTGGACGATTCTGTTAGTCGAACAGTGCCGATTAAGATCGGTGGCG
TATCCAGAGCTGCTCGCGAACTGGTGCTGCGACTGGCGTTGGTGATGATT
ACCACTGGGAAACGGACGTCGCATCCTACTCTTTTAGGTGGTATTGTAAT
CAAGTTGATTGCGGGCATTGGACAGACGCTGCTCAAGACTTTGGGGACAG
ATAAACTTGCATATAATAGGGCGGCGCAGTTGTGGGTGGACGTGATGTTT
ATTCAAGGAATGGTTACGAAAGGAGCAAGCGCAGATACCGGTGGTCTGCA
GGCTTCTCTAGATGGGTTTTCGAGAGTGAAGGAACGGGCTGTACAGGCGG
TTTTGGCAGACGGATTCAGTTTCAGCTTGGCTGATATGAATACATTGAGG
GAGGACGTTGTGGAGAATGAACTGCAAGACTGCTCCATGATCTGTGAGTG
TTTTAAGGAGACATGGAACATGGTGACCTCTAAGAGCGACGAAGATTAG

Coding sequence (CDS) from alignment at tig00000123_pilon:406278..408776-

>Ggra2830.t1 ID=Ggra2830.t1|Name=Ggra2830.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2499bp|location=Sequence derived from alignment at tig00000123_pilon:406278..408776- (Gracilaria gracilis GNS1m male)
ATGGCGCCGTTCGAGCCGTCGACGTGGGCGGAGGTGTCCGAGGCGTTGGC
CAACGTGCGCCTGTGCTCGGATCCGCCGCAGTTCGTCACGCAGGTGCGTT
CGTTCACACAGGCGCCGCACCGATACCTCACGCAGCCGCCGCCTTCGGAG
CTGCGCGGCGAACGCGCGCCGCAACGCCCGCCCGTGCGACGCGATGATCC
GCAGTCGTCGCCGTCGTCGCTGCGTCGCGCGCCACACGCGTCGCAGCCCG
CGCTGCGCACGGACGCTTTGTTCGACGATCTGCTGGGGCTGGGCAGGGTG
GACGCGCTGGACGGCTCGCTCGCGCGCCGACAGCTCGTGGCCAAGCCCGC
TTTCCCGCTCGCTTGCGCTCCGTCTGTCATCAACCCTTCCAGCTCGCTGT
TTGAGCCGGCGCAGTATCTGGCCACCGTTCATGCGCACTCCAGTTCGCTG
CAGCTCAGGCAGGGCAAGAATGTGTTGGCGCAGCTGCAGCAAAAGTTGCA
CGCGCAGAAGGAACGATATCGCGAGCAAAAGTATGTGTTTGCTACTTATG
TTCACGCCCATTTTGAACTGGCCAAGCAATCCACCGCCCACATGTCGCCG
TTCACCGATCGCACGTCGGCTGTGCACTGTCGCACCCGCTTTCTTCGCGC
CGAGAACACCTTGCGCAATCGCTACGATGACTTGCTGCAGCGAGAGACCA
AGCTGGAGCGTCTGCACGCCGCGCTCACCGTGTATAAGCGCTACGAGTGG
CTATTCTCGCTGGGAAACACGCTGCGTTCAGCCGCCAATCAAAGCGTTAC
CACCATTGAGGATGCGCTTGCCGACTATTCCAGGGCCAATTCTTGGCTCG
CTGCGCAGCCGCCGCAGTCGTTGCAGGTGCTTCGCGACGACATTCACCAA
GGCTTTCAGCTTCTTCTTAATGAGATTGTGCAACGATTGTCTAATGTTCA
TACTTCTAACGCCGATACTTCCCGCTTGGTCGCCGCGCTGTTTTCTGTCA
ACAACGAGCAAAAGTTGACGTCCATTCTGTCGCGCCGCATACACACCGCG
GAGAACGCGCTCAACGCTGCTATTGCCGCCGCTGAGTTGCCCTCTCTGCT
CTCCGAAGATACTCACACCGATACCGAACTCCATGACTTGGTCACCAGCG
CGAGTGACGGATTGCATGTGGCGCTGGCGCACGTGTGGAGGTTGGGTCGC
CTGCTTGCAGAACACGATCGATGGATACGGGTCGTCGATTCTCACCTTAC
CCGCTTGTGTGATATGTATGCGCGGCTGATACGGGAGGATGTCATGCATG
ACGTGAGTGTCATCACCAGGCCGATTGTGAATGAGATTTCGAGCACGCGC
AAGAAGGCGGTGGAGGAGCTGCGCATCCCGGACGCGTCTGTCGCCACCCT
GGAACGGGTTAGCAACTCTGTGACCGCCGCATTCTTGCAGTCGCTTACGC
GCGCGGTGCGGCACGGCACGGAGAGGTTGGCGTCTCATGAAGTGCATCAC
AATACGGTTGGAGCGTCATCGGCCAAATTCTTGCGCGCAGTGGTGGTGGA
GGCGCTTGTTCAGGTCGACACGGCATGGGTTCGAGCGAAGGAGGTGGATG
GCGATGTCGTTGTCATCACAGAAGATATAGACAAAGAAGGGGACGAAGGG
CAAGATGGTGCCGAGGCGCCTAGCGTGGACCGATTGTGTCGGACGTGCGT
GCAAGCGCCGCTTCTGTTTGTCAGCATCGTGGAACGAATGATGACGGATT
ACAAGGATAATGAAACTGCAGCTCTACGATTGGCGGTGTGTTGTACAGAG
ATGGTTGAAAACGTGTTGAAGGCCCTTGAGCGGAAGACTGGCTTGGGCTC
ACCATACGACTCGCGCGCTACGCAAAGGCAGTTGCATCATGTTGCTCGCA
GGATTGGCGAGATTAAGGACAGGGCATTGAAGGCATATGTGGCACTTGTC
TTCGAGCCGTTGCACAGGATGGCAGGCGCTTTGGTGAGGCAACCAGATGA
CAAGTTGGACGATTCTGTTAGTCGAACAGTGCCGATTAAGATCGGTGGCG
TATCCAGAGCTGCTCGCGAACTGGTGCTGCGACTGGCGTTGGTGATGATT
ACCACTGGGAAACGGACGTCGCATCCTACTCTTTTAGGTGGTATTGTAAT
CAAGTTGATTGCGGGCATTGGACAGACGCTGCTCAAGACTTTGGGGACAG
ATAAACTTGCATATAATAGGGCGGCGCAGTTGTGGGTGGACGTGATGTTT
ATTCAAGGAATGGTTACGAAAGGAGCAAGCGCAGATACCGGTGGTCTGCA
GGCTTCTCTAGATGGGTTTTCGAGAGTGAAGGAACGGGCTGTACAGGCGG
TTTTGGCAGACGGATTCAGTTTCAGCTTGGCTGATATGAATACATTGAGG
GAGGACGTTGTGGAGAATGAACTGCAAGACTGCTCCATGATCTGTGAGTG
TTTTAAGGAGACATGGAACATGGTGACCTCTAAGAGCGACGAAGATTAG