Ggra2835.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2835.t2
Unique NameGgra2835.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:417788..419248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004309868.1
PFAMsCastor_Poll_mid
Max annot lvl35493|Streptophyta
KEGG koko:K21866
KEGG TC1.A.1.23
Evalue4.79e-33
EggNOG OGsCOG1226@1|root,2QU6W@2759|Eukaryota,37HZ3@33090|Viridiplantae,3GAU3@35493|Streptophyta,4JMTI@91835|fabids
DescriptionIon channel CASTOR-like
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2835Ggra2835Gracilaria gracilis GNS1m malegenetig00000123_pilon 417194..419248 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2835.t2.start1Ggra2835.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 417788..417790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2835.t2.CDS1Ggra2835.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 417788..419248 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2835.t2.exon1Ggra2835.t2.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 417788..419248 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2835.t2.stop1Ggra2835.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 419246..419248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2835.t2Ggra2835.t2Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 417788..419248 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2835.t2 ID=Ggra2835.t2|Name=Ggra2835.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MFSQLREALPDDELRKLRLFYRPGVPVIKDDLSRVAATRAKKIILVTERQ
GDPTDADRQTLSRAMALRQNLPGFTGDIVAELRSERDERILKAILRNTQA
RSVETINAEKLLYRFMAQAIRQPGLADVVGELMGDDVIRVFHVEAAQRIA
PDLVGSKLNTLKPTSIPGSILCGFVMNGTVKIGLGSELSIQPSTELLFLG
GQRNTGTKGIEASDIEGTIIKPGGIQMAERKKEPESYLICGWRPEMRHML
KELDEILVRGSKLTILAEDAPMKPPRKLKNLSLKTVHNRADRYENLEELF
LQNPKGFDHVVILSSTFGGNELKETGGTEEDAATIASLAYVNELLHNQRE
AQQIDAKTVVTVEFLNERIAQMAKEQGYVANSILPHNLSAKIAAQTVRDS
RLNTVWNQLLSQEGYEVYLRPCGAYEGVEESSKSFSQVAEDVCGYDDILL
GYIGSDGRVAMNPSESNRTAPREWNASDLLIVLSEK*
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spliced messenger RNA

>Ggra2835.t2 ID=Ggra2835.t2|Name=Ggra2835.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000123_pilon:417788..419248+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCCAGTTACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATT
GCGTTTGTTCTACCGACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTC
GGGTAGCTGCTACTCGAGCAAAGAAGATCATTTTGGTTACAGAACGACAA
GGAGATCCTACGGATGCAGACAGACAAACTCTCTCTAGAGCAATGGCACT
ACGGCAGAATCTTCCAGGATTCACCGGTGATATTGTTGCCGAACTTCGTT
CAGAACGAGATGAACGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCT
CGTTCCGTGGAGACAATTAATGCAGAGAAGTTATTGTACCGATTTATGGC
ACAGGCGATAAGGCAACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGG
GAGATGATGTGATCCGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCC
CCTGATCTAGTTGGCTCAAAACTCAATACCTTAAAGCCTACGTCTATTCC
AGGTTCAATTCTTTGCGGGTTTGTCATGAATGGGACTGTAAAGATCGGAC
TGGGCAGTGAACTAAGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGC
GGTCAACGTAATACTGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGG
CACGATAATAAAACCCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGC
CGGAGTCCTATCTCATATGTGGATGGAGGCCTGAAATGCGTCACATGCTG
AAGGAACTTGATGAAATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGC
TGAGGATGCACCCATGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCA
AGACCGTTCATAACCGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTC
CTCCAAAATCCGAAGGGTTTTGATCACGTAGTGATACTGAGCTCCACTTT
CGGTGGCAATGAACTCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAA
CGATTGCAAGTCTTGCGTATGTCAACGAACTCCTTCATAACCAAAGAGAA
GCTCAACAAATTGATGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGA
GCGTATTGCGCAGATGGCGAAGGAACAAGGATACGTTGCAAATTCGATTC
TCCCACACAATCTGAGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGC
AGATTGAACACTGTATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGT
ATATCTACGACCATGCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAAT
CGTTTTCACAGGTCGCTGAGGACGTTTGCGGCTATGATGACATACTACTT
GGATACATCGGAAGCGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAA
CAGAACTGCACCTCGTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTT
CGGAAAAGTAA
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protein sequence of Ggra2835.t2

>Ggra2835.t2 ID=Ggra2835.t2|Name=Ggra2835.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MFSQLREALPDDELRKLRLFYRPGVPVIKDDLSRVAATRAKKIILVTERQ
GDPTDADRQTLSRAMALRQNLPGFTGDIVAELRSERDERILKAILRNTQA
RSVETINAEKLLYRFMAQAIRQPGLADVVGELMGDDVIRVFHVEAAQRIA
PDLVGSKLNTLKPTSIPGSILCGFVMNGTVKIGLGSELSIQPSTELLFLG
GQRNTGTKGIEASDIEGTIIKPGGIQMAERKKEPESYLICGWRPEMRHML
KELDEILVRGSKLTILAEDAPMKPPRKLKNLSLKTVHNRADRYENLEELF
LQNPKGFDHVVILSSTFGGNELKETGGTEEDAATIASLAYVNELLHNQRE
AQQIDAKTVVTVEFLNERIAQMAKEQGYVANSILPHNLSAKIAAQTVRDS
RLNTVWNQLLSQEGYEVYLRPCGAYEGVEESSKSFSQVAEDVCGYDDILL
GYIGSDGRVAMNPSESNRTAPREWNASDLLIVLSEK*
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mRNA from alignment at tig00000123_pilon:417788..419248+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2835.t2 ID=Ggra2835.t2|Name=Ggra2835.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000123_pilon:417788..419248+ (Gracilaria gracilis GNS1m male)
ATGTTTTCCCAGTTACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATT
GCGTTTGTTCTACCGACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTC
GGGTAGCTGCTACTCGAGCAAAGAAGATCATTTTGGTTACAGAACGACAA
GGAGATCCTACGGATGCAGACAGACAAACTCTCTCTAGAGCAATGGCACT
ACGGCAGAATCTTCCAGGATTCACCGGTGATATTGTTGCCGAACTTCGTT
CAGAACGAGATGAACGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCT
CGTTCCGTGGAGACAATTAATGCAGAGAAGTTATTGTACCGATTTATGGC
ACAGGCGATAAGGCAACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGG
GAGATGATGTGATCCGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCC
CCTGATCTAGTTGGCTCAAAACTCAATACCTTAAAGCCTACGTCTATTCC
AGGTTCAATTCTTTGCGGGTTTGTCATGAATGGGACTGTAAAGATCGGAC
TGGGCAGTGAACTAAGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGC
GGTCAACGTAATACTGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGG
CACGATAATAAAACCCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGC
CGGAGTCCTATCTCATATGTGGATGGAGGCCTGAAATGCGTCACATGCTG
AAGGAACTTGATGAAATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGC
TGAGGATGCACCCATGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCA
AGACCGTTCATAACCGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTC
CTCCAAAATCCGAAGGGTTTTGATCACGTAGTGATACTGAGCTCCACTTT
CGGTGGCAATGAACTCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAA
CGATTGCAAGTCTTGCGTATGTCAACGAACTCCTTCATAACCAAAGAGAA
GCTCAACAAATTGATGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGA
GCGTATTGCGCAGATGGCGAAGGAACAAGGATACGTTGCAAATTCGATTC
TCCCACACAATCTGAGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGC
AGATTGAACACTGTATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGT
ATATCTACGACCATGCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAAT
CGTTTTCACAGGTCGCTGAGGACGTTTGCGGCTATGATGACATACTACTT
GGATACATCGGAAGCGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAA
CAGAACTGCACCTCGTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTT
CGGAAAAGTAA
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Coding sequence (CDS) from alignment at tig00000123_pilon:417788..419248+

>Ggra2835.t2 ID=Ggra2835.t2|Name=Ggra2835.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000123_pilon:417788..419248+ (Gracilaria gracilis GNS1m male)
ATGTTTTCCCAGTTACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATT
GCGTTTGTTCTACCGACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTC
GGGTAGCTGCTACTCGAGCAAAGAAGATCATTTTGGTTACAGAACGACAA
GGAGATCCTACGGATGCAGACAGACAAACTCTCTCTAGAGCAATGGCACT
ACGGCAGAATCTTCCAGGATTCACCGGTGATATTGTTGCCGAACTTCGTT
CAGAACGAGATGAACGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCT
CGTTCCGTGGAGACAATTAATGCAGAGAAGTTATTGTACCGATTTATGGC
ACAGGCGATAAGGCAACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGG
GAGATGATGTGATCCGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCC
CCTGATCTAGTTGGCTCAAAACTCAATACCTTAAAGCCTACGTCTATTCC
AGGTTCAATTCTTTGCGGGTTTGTCATGAATGGGACTGTAAAGATCGGAC
TGGGCAGTGAACTAAGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGC
GGTCAACGTAATACTGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGG
CACGATAATAAAACCCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGC
CGGAGTCCTATCTCATATGTGGATGGAGGCCTGAAATGCGTCACATGCTG
AAGGAACTTGATGAAATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGC
TGAGGATGCACCCATGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCA
AGACCGTTCATAACCGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTC
CTCCAAAATCCGAAGGGTTTTGATCACGTAGTGATACTGAGCTCCACTTT
CGGTGGCAATGAACTCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAA
CGATTGCAAGTCTTGCGTATGTCAACGAACTCCTTCATAACCAAAGAGAA
GCTCAACAAATTGATGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGA
GCGTATTGCGCAGATGGCGAAGGAACAAGGATACGTTGCAAATTCGATTC
TCCCACACAATCTGAGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGC
AGATTGAACACTGTATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGT
ATATCTACGACCATGCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAAT
CGTTTTCACAGGTCGCTGAGGACGTTTGCGGCTATGATGACATACTACTT
GGATACATCGGAAGCGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAA
CAGAACTGCACCTCGTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTT
CGGAAAAGTAA
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