Ggra2297.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2297.t1
Unique NameGgra2297.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:56831..57574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123248.KB893315_gene3187
PFAMsEpimerase,NAD_binding_10
Max annot lvl976|Bacteroidetes
Evalue6.77e-06
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,4NG89@976|Bacteroidetes,1IS95@117747|Sphingobacteriia
Descriptionepimerase
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2297Ggra2297Gracilaria gracilis GNS1m malegenetig00000122_pilon 56831..57574 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2297.t1.stop1Ggra2297.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 56831..56833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2297.t1.CDS1Ggra2297.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 56831..57574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2297.t1.exon1Ggra2297.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 56831..57574 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2297.t1.start1Ggra2297.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 57572..57574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2297.t1Ggra2297.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 56831..57574 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2297.t1 ID=Ggra2297.t1|Name=Ggra2297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MSDYNRPPPPVTGFPKIAVVCAGHTPLGRRLAHDLLQSDKVEKVHVIVPE
PVRHFDKLPLPIQRKLTVYIANFADLDTTLSRIGEADYAFCVSATDKRAY
EVMGRTRFKQYNYHAPCQFIRKMFELGVLHLSILSHLNADAHSKSEFFKL
RGELELFADELVQEAGEYAPYMSLYKIPTPVARSNGRPNREVLEKDLVLA
MQYHAFSTGVLRKGPSCKRRKLQYEELFTDDVSELVSEAKSIRWGEL*
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spliced messenger RNA

>Ggra2297.t1 ID=Ggra2297.t1|Name=Ggra2297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000122_pilon:56831..57574- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATTACAACCGTCCGCCGCCACCCGTGACCGGCTTTCCCAAAAT
CGCCGTCGTATGCGCCGGCCACACCCCCCTCGGCCGCCGTCTCGCGCACG
ATCTCCTTCAATCCGACAAGGTCGAAAAGGTGCACGTCATTGTCCCAGAG
CCCGTGCGTCACTTTGACAAGCTGCCGCTGCCCATACAGCGCAAGTTAAC
GGTATACATCGCCAACTTTGCCGATCTTGATACCACGCTGTCGCGTATTG
GAGAGGCTGACTATGCATTTTGCGTGTCTGCTACCGATAAGAGGGCGTAC
GAAGTGATGGGACGTACGCGTTTCAAGCAGTATAACTATCATGCCCCTTG
CCAGTTCATCCGAAAGATGTTTGAACTTGGTGTGTTACATCTTTCCATTC
TGTCGCATCTCAATGCAGACGCGCATAGTAAGAGCGAGTTCTTCAAACTT
CGTGGCGAACTTGAACTCTTTGCGGACGAACTGGTACAAGAAGCTGGCGA
GTATGCGCCATACATGTCTCTATACAAGATACCTACTCCTGTCGCTCGAT
CAAATGGGCGCCCCAATCGAGAGGTGCTGGAGAAAGACCTTGTGTTGGCC
ATGCAATATCATGCCTTTTCGACGGGCGTCCTGAGAAAAGGTCCCTCCTG
TAAGAGAAGGAAGCTTCAGTACGAAGAATTGTTCACCGACGACGTATCCG
AGTTGGTAAGCGAGGCAAAATCAATTCGCTGGGGTGAGCTTTGA
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protein sequence of Ggra2297.t1

>Ggra2297.t1 ID=Ggra2297.t1|Name=Ggra2297.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MSDYNRPPPPVTGFPKIAVVCAGHTPLGRRLAHDLLQSDKVEKVHVIVPE
PVRHFDKLPLPIQRKLTVYIANFADLDTTLSRIGEADYAFCVSATDKRAY
EVMGRTRFKQYNYHAPCQFIRKMFELGVLHLSILSHLNADAHSKSEFFKL
RGELELFADELVQEAGEYAPYMSLYKIPTPVARSNGRPNREVLEKDLVLA
MQYHAFSTGVLRKGPSCKRRKLQYEELFTDDVSELVSEAKSIRWGEL*
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mRNA from alignment at tig00000122_pilon:56831..57574-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2297.t1 ID=Ggra2297.t1|Name=Ggra2297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000122_pilon:56831..57574- (Gracilaria gracilis GNS1m male)
ATGTCCGATTACAACCGTCCGCCGCCACCCGTGACCGGCTTTCCCAAAAT
CGCCGTCGTATGCGCCGGCCACACCCCCCTCGGCCGCCGTCTCGCGCACG
ATCTCCTTCAATCCGACAAGGTCGAAAAGGTGCACGTCATTGTCCCAGAG
CCCGTGCGTCACTTTGACAAGCTGCCGCTGCCCATACAGCGCAAGTTAAC
GGTATACATCGCCAACTTTGCCGATCTTGATACCACGCTGTCGCGTATTG
GAGAGGCTGACTATGCATTTTGCGTGTCTGCTACCGATAAGAGGGCGTAC
GAAGTGATGGGACGTACGCGTTTCAAGCAGTATAACTATCATGCCCCTTG
CCAGTTCATCCGAAAGATGTTTGAACTTGGTGTGTTACATCTTTCCATTC
TGTCGCATCTCAATGCAGACGCGCATAGTAAGAGCGAGTTCTTCAAACTT
CGTGGCGAACTTGAACTCTTTGCGGACGAACTGGTACAAGAAGCTGGCGA
GTATGCGCCATACATGTCTCTATACAAGATACCTACTCCTGTCGCTCGAT
CAAATGGGCGCCCCAATCGAGAGGTGCTGGAGAAAGACCTTGTGTTGGCC
ATGCAATATCATGCCTTTTCGACGGGCGTCCTGAGAAAAGGTCCCTCCTG
TAAGAGAAGGAAGCTTCAGTACGAAGAATTGTTCACCGACGACGTATCCG
AGTTGGTAAGCGAGGCAAAATCAATTCGCTGGGGTGAGCTTTGA
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Coding sequence (CDS) from alignment at tig00000122_pilon:56831..57574-

>Ggra2297.t1 ID=Ggra2297.t1|Name=Ggra2297.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000122_pilon:56831..57574- (Gracilaria gracilis GNS1m male)
ATGTCCGATTACAACCGTCCGCCGCCACCCGTGACCGGCTTTCCCAAAAT
CGCCGTCGTATGCGCCGGCCACACCCCCCTCGGCCGCCGTCTCGCGCACG
ATCTCCTTCAATCCGACAAGGTCGAAAAGGTGCACGTCATTGTCCCAGAG
CCCGTGCGTCACTTTGACAAGCTGCCGCTGCCCATACAGCGCAAGTTAAC
GGTATACATCGCCAACTTTGCCGATCTTGATACCACGCTGTCGCGTATTG
GAGAGGCTGACTATGCATTTTGCGTGTCTGCTACCGATAAGAGGGCGTAC
GAAGTGATGGGACGTACGCGTTTCAAGCAGTATAACTATCATGCCCCTTG
CCAGTTCATCCGAAAGATGTTTGAACTTGGTGTGTTACATCTTTCCATTC
TGTCGCATCTCAATGCAGACGCGCATAGTAAGAGCGAGTTCTTCAAACTT
CGTGGCGAACTTGAACTCTTTGCGGACGAACTGGTACAAGAAGCTGGCGA
GTATGCGCCATACATGTCTCTATACAAGATACCTACTCCTGTCGCTCGAT
CAAATGGGCGCCCCAATCGAGAGGTGCTGGAGAAAGACCTTGTGTTGGCC
ATGCAATATCATGCCTTTTCGACGGGCGTCCTGAGAAAAGGTCCCTCCTG
TAAGAGAAGGAAGCTTCAGTACGAAGAATTGTTCACCGACGACGTATCCG
AGTTGGTAAGCGAGGCAAAATCAATTCGCTGGGGTGAGCTTTGA
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