Ggra2384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2384.t1
Unique NameGgra2384.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:96493..97527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog63418.F2Q406
Preferred nameDCD1
PFAMsdCMP_cyt_deam_1
Max annot lvl4751|Fungi
KEGG rclassRC00074
KEGG koko:K01493
KEGG ReactionR01663
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00429
GOsGO:0003674,GO:0003824,GO:0004132,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.33e-72
EggNOG OGsCOG2131@1|root,KOG3127@2759|Eukaryota,38HPY@33154|Opisthokonta,3NVNV@4751|Fungi,3QQ80@4890|Ascomycota,20CHB@147545|Eurotiomycetes,3B1CQ@33183|Onygenales,3FV74@34384|Arthrodermataceae
EC3.5.4.12
DescriptionMafB19-like deaminase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2384Ggra2384Gracilaria gracilis GNS1m malegenetig00000005_pilon 96493..97527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2384.t1.stop1Ggra2384.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 96493..96495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2384.t1.CDS1Ggra2384.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 96493..97527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2384.t1.exon1Ggra2384.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 96493..97527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2384.t1.start1Ggra2384.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 97525..97527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2384.t1Ggra2384.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 96493..97527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2384.t1 ID=Ggra2384.t1|Name=Ggra2384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MLIYVCGPHYAGKKTLARYLTDKLGFLQVDDAQVTETNKPQPDAHHPPPL
ISSCWRQDTVAVIVSHPSHGKSIMNLLRRPWVLILYVDGPLLTRFYRFCQ
KLPNSEKWSSFLSFTEREQAFSNICYNSHYQLSALNRRDATPGIDMHQLY
KMAHIRIFNDFASVQHFHQALAQINFTDMRRLRPTWDTYFMSLARLTSQR
TNCMKRRVGCVIARDRRVVATGYNGTPAGVTNCFEGGCPRCNEQNVQGVG
LDLCLCLHAEENAIIEAGRQRCQSSTLYTSVFPCILCSKKIVQAGVSRVV
FDSGYGSDRASEGLLKAGGVIVDKLVADDMCVRVTSMAKDGSYK*
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spliced messenger RNA

>Ggra2384.t1 ID=Ggra2384.t1|Name=Ggra2384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000005_pilon:96493..97527- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATTTACGTCTGCGGCCCGCACTATGCAGGAAAGAAAACTCTCGC
TCGCTATCTTACTGATAAGCTCGGCTTTCTTCAAGTTGATGACGCGCAAG
TCACAGAGACAAACAAACCTCAGCCTGATGCGCATCACCCACCGCCGCTC
ATCTCTTCTTGCTGGCGGCAGGATACTGTCGCTGTTATTGTCTCACACCC
CTCGCATGGAAAATCGATCATGAATCTCTTGAGACGTCCGTGGGTCCTTA
TTCTATACGTCGACGGGCCTCTCCTGACTCGCTTTTATAGATTCTGCCAG
AAACTCCCTAATTCCGAGAAGTGGTCTTCGTTTCTTTCGTTTACTGAACG
AGAACAAGCCTTTTCAAACATTTGTTATAACTCGCACTACCAACTATCCG
CTCTCAACCGTCGCGACGCCACCCCGGGCATCGACATGCACCAACTGTAC
AAAATGGCTCACATTCGCATTTTTAACGACTTTGCTTCCGTTCAACACTT
TCATCAAGCTCTAGCACAGATTAATTTCACAGACATGCGTCGACTGCGAC
CCACATGGGACACCTATTTCATGTCATTGGCCCGTCTCACTTCGCAAAGA
ACCAACTGCATGAAACGGCGCGTAGGTTGTGTCATTGCCAGAGACCGAAG
GGTAGTAGCTACTGGATACAACGGAACTCCAGCCGGAGTCACCAACTGTT
TTGAAGGCGGATGTCCACGTTGCAATGAACAAAATGTGCAAGGAGTGGGC
CTGGATCTTTGTCTATGTCTTCATGCCGAAGAAAATGCTATCATTGAAGC
TGGCCGTCAACGTTGTCAAAGCAGTACTCTTTACACAAGTGTATTTCCAT
GCATTCTGTGTTCGAAAAAGATAGTTCAGGCAGGCGTTTCAAGAGTTGTC
TTCGATTCCGGATATGGCTCTGATCGTGCTTCTGAAGGGCTTCTCAAGGC
GGGAGGAGTTATTGTTGATAAGCTTGTAGCAGATGATATGTGTGTTCGCG
TTACGAGCATGGCGAAAGATGGCTCGTACAAGTAA
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protein sequence of Ggra2384.t1

>Ggra2384.t1 ID=Ggra2384.t1|Name=Ggra2384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MLIYVCGPHYAGKKTLARYLTDKLGFLQVDDAQVTETNKPQPDAHHPPPL
ISSCWRQDTVAVIVSHPSHGKSIMNLLRRPWVLILYVDGPLLTRFYRFCQ
KLPNSEKWSSFLSFTEREQAFSNICYNSHYQLSALNRRDATPGIDMHQLY
KMAHIRIFNDFASVQHFHQALAQINFTDMRRLRPTWDTYFMSLARLTSQR
TNCMKRRVGCVIARDRRVVATGYNGTPAGVTNCFEGGCPRCNEQNVQGVG
LDLCLCLHAEENAIIEAGRQRCQSSTLYTSVFPCILCSKKIVQAGVSRVV
FDSGYGSDRASEGLLKAGGVIVDKLVADDMCVRVTSMAKDGSYK*
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mRNA from alignment at tig00000005_pilon:96493..97527-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2384.t1 ID=Ggra2384.t1|Name=Ggra2384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000005_pilon:96493..97527- (Gracilaria gracilis GNS1m male)
ATGCTCATTTACGTCTGCGGCCCGCACTATGCAGGAAAGAAAACTCTCGC
TCGCTATCTTACTGATAAGCTCGGCTTTCTTCAAGTTGATGACGCGCAAG
TCACAGAGACAAACAAACCTCAGCCTGATGCGCATCACCCACCGCCGCTC
ATCTCTTCTTGCTGGCGGCAGGATACTGTCGCTGTTATTGTCTCACACCC
CTCGCATGGAAAATCGATCATGAATCTCTTGAGACGTCCGTGGGTCCTTA
TTCTATACGTCGACGGGCCTCTCCTGACTCGCTTTTATAGATTCTGCCAG
AAACTCCCTAATTCCGAGAAGTGGTCTTCGTTTCTTTCGTTTACTGAACG
AGAACAAGCCTTTTCAAACATTTGTTATAACTCGCACTACCAACTATCCG
CTCTCAACCGTCGCGACGCCACCCCGGGCATCGACATGCACCAACTGTAC
AAAATGGCTCACATTCGCATTTTTAACGACTTTGCTTCCGTTCAACACTT
TCATCAAGCTCTAGCACAGATTAATTTCACAGACATGCGTCGACTGCGAC
CCACATGGGACACCTATTTCATGTCATTGGCCCGTCTCACTTCGCAAAGA
ACCAACTGCATGAAACGGCGCGTAGGTTGTGTCATTGCCAGAGACCGAAG
GGTAGTAGCTACTGGATACAACGGAACTCCAGCCGGAGTCACCAACTGTT
TTGAAGGCGGATGTCCACGTTGCAATGAACAAAATGTGCAAGGAGTGGGC
CTGGATCTTTGTCTATGTCTTCATGCCGAAGAAAATGCTATCATTGAAGC
TGGCCGTCAACGTTGTCAAAGCAGTACTCTTTACACAAGTGTATTTCCAT
GCATTCTGTGTTCGAAAAAGATAGTTCAGGCAGGCGTTTCAAGAGTTGTC
TTCGATTCCGGATATGGCTCTGATCGTGCTTCTGAAGGGCTTCTCAAGGC
GGGAGGAGTTATTGTTGATAAGCTTGTAGCAGATGATATGTGTGTTCGCG
TTACGAGCATGGCGAAAGATGGCTCGTACAAGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:96493..97527-

>Ggra2384.t1 ID=Ggra2384.t1|Name=Ggra2384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000005_pilon:96493..97527- (Gracilaria gracilis GNS1m male)
ATGCTCATTTACGTCTGCGGCCCGCACTATGCAGGAAAGAAAACTCTCGC
TCGCTATCTTACTGATAAGCTCGGCTTTCTTCAAGTTGATGACGCGCAAG
TCACAGAGACAAACAAACCTCAGCCTGATGCGCATCACCCACCGCCGCTC
ATCTCTTCTTGCTGGCGGCAGGATACTGTCGCTGTTATTGTCTCACACCC
CTCGCATGGAAAATCGATCATGAATCTCTTGAGACGTCCGTGGGTCCTTA
TTCTATACGTCGACGGGCCTCTCCTGACTCGCTTTTATAGATTCTGCCAG
AAACTCCCTAATTCCGAGAAGTGGTCTTCGTTTCTTTCGTTTACTGAACG
AGAACAAGCCTTTTCAAACATTTGTTATAACTCGCACTACCAACTATCCG
CTCTCAACCGTCGCGACGCCACCCCGGGCATCGACATGCACCAACTGTAC
AAAATGGCTCACATTCGCATTTTTAACGACTTTGCTTCCGTTCAACACTT
TCATCAAGCTCTAGCACAGATTAATTTCACAGACATGCGTCGACTGCGAC
CCACATGGGACACCTATTTCATGTCATTGGCCCGTCTCACTTCGCAAAGA
ACCAACTGCATGAAACGGCGCGTAGGTTGTGTCATTGCCAGAGACCGAAG
GGTAGTAGCTACTGGATACAACGGAACTCCAGCCGGAGTCACCAACTGTT
TTGAAGGCGGATGTCCACGTTGCAATGAACAAAATGTGCAAGGAGTGGGC
CTGGATCTTTGTCTATGTCTTCATGCCGAAGAAAATGCTATCATTGAAGC
TGGCCGTCAACGTTGTCAAAGCAGTACTCTTTACACAAGTGTATTTCCAT
GCATTCTGTGTTCGAAAAAGATAGTTCAGGCAGGCGTTTCAAGAGTTGTC
TTCGATTCCGGATATGGCTCTGATCGTGCTTCTGAAGGGCTTCTCAAGGC
GGGAGGAGTTATTGTTGATAAGCTTGTAGCAGATGATATGTGTGTTCGCG
TTACGAGCATGGCGAAAGATGGCTCGTACAAGTAA
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