Ggra6927.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6927.t1
Unique NameGgra6927.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length643
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:75805..78057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ098CT
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Evalue1.86e-123
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota
EC2.7.7.7
DescriptionDNA replication proofreading
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6927Ggra6927Gracilaria gracilis GNS1m malegenetig00000115_pilon 75805..78057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6927.t1Ggra6927.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 75805..78057 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6927.t1.start1Ggra6927.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 75805..75807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6927.t1.CDS1Ggra6927.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 75805..76162 +
Ggra6927.t1.CDS2Ggra6927.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 76222..76608 +
Ggra6927.t1.CDS3Ggra6927.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000115_pilon 76713..77034 +
Ggra6927.t1.CDS4Ggra6927.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000115_pilon 77196..78057 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6927.t1.exon1Ggra6927.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 75805..76162 +
Ggra6927.t1.exon2Ggra6927.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 76222..76608 +
Ggra6927.t1.exon3Ggra6927.t1.exon3Gracilaria gracilis GNS1m maleexontig00000115_pilon 76713..77034 +
Ggra6927.t1.exon4Ggra6927.t1.exon4Gracilaria gracilis GNS1m maleexontig00000115_pilon 77196..78057 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6927.t1.intron1Ggra6927.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 76163..76221 +
Ggra6927.t1.intron2Ggra6927.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000115_pilon 76609..76712 +
Ggra6927.t1.intron3Ggra6927.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000115_pilon 77035..77195 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6927.t1.stop1Ggra6927.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 78055..78057 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6927.t1 ID=Ggra6927.t1|Name=Ggra6927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=643bp
MYTNIILTNRLQPNAIVTPAQCAACDFNGMSECQRYMEWTWRGEHYLASY
GEAEMIQRRTTQEQRDAELRAAAEAAKSAENNDDDRRDTLRYRKRHSPVK
DPKTTRDSSAIPNFNDEEAHGGDQIRSENGTICQGENPSYVDTVREFRNR
RYEYKGLLKKRKKLKVEAKQCEDVGAIKFAEKLVVLYDSLQLAHKCILNS
YYGYVKRKGARWYPMEMAGVVTNTGALIIRRAREFIDKVGLPLELDTDDV
TDNFTNHQYLDLVDPETFEYEQRGECSILFEVDGPYRAMVLPASLEEGKS
IKKRYAVFNDDGSLVELKGFETKRSGELKLIKQFQGEIFERFLRGTRFLG
AIGKLAMHEFLEAERVKEKGLATIYVIARNPEDTQVTSSAIPVQIFEFQK
EVVRRRLLKKWLKCADNDGLELRELLHWDYYQGRLANAVLKIVSIPAALQ
AVENQVPRIEYPPWLVKKCKELADVMKPQKLSSFFSALPKGQRARISGKA
LRDAMDDTAKLGIDDIEDLPVGAWTTARVAKRRAKTVVTRRLRNERETFK
KTRTTGVHPDELVLRSKAKDPGERATQGRNAMLQFTRASHSDIRLDYAGW
VRFAKRVCRAQRAIRVQRYARKRTIAQVTGDEAEPHTDEERG*
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spliced messenger RNA

>Ggra6927.t1 ID=Ggra6927.t1|Name=Ggra6927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00000115_pilon:75805..78057+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATACCAATATCATTTTGACGAACCGTCTTCAACCCAACGCAATTGT
CACACCTGCCCAGTGCGCTGCATGTGACTTCAACGGCATGTCGGAGTGTC
AACGCTACATGGAATGGACCTGGCGAGGTGAGCACTATCTGGCCTCATAC
GGAGAGGCAGAAATGATTCAAAGAAGAACCACCCAGGAGCAACGAGATGC
AGAACTACGCGCTGCTGCTGAGGCAGCAAAATCAGCCGAGAATAATGATG
ACGATAGAAGGGACACTTTGCGGTACAGAAAGCGCCACTCCCCCGTCAAG
GATCCGAAAACAACACGGGATTCTTCAGCCATTCCAAATTTTAATGACGA
AGAAGCCCACGGTGGAGACCAGATTCGTTCCGAAAACGGCACCATCTGTC
AAGGAGAGAACCCTTCTTATGTAGATACCGTGCGTGAATTTCGAAATCGA
AGATACGAATACAAGGGGCTTTTGAAGAAGCGGAAGAAACTGAAAGTTGA
AGCAAAGCAGTGCGAAGACGTCGGTGCTATTAAGTTCGCAGAGAAGCTTG
TTGTCTTGTACGACTCCCTTCAACTTGCACACAAGTGCATTTTGAATTCG
TACTATGGTTACGTAAAGAGAAAGGGCGCTCGGTGGTATCCCATGGAGAT
GGCAGGAGTCGTCACCAATACTGGTGCACTCATAATTCGCAGAGCCCGAG
AATTCATAGACAAAGTTGGACTTCCTCTCGAACTCGACACAGATGATGTG
ACGGACAATTTCACAAACCATCAGTATCTAGATTTAGTGGACCCTGAAAC
ATTCGAGTACGAGCAGAGGGGTGAATGTTCGATCCTTTTCGAAGTCGACG
GCCCATATCGTGCAATGGTCTTACCGGCCTCCTTGGAGGAAGGCAAAAGC
ATCAAGAAGCGCTATGCGGTCTTCAATGACGACGGTTCTCTTGTTGAATT
GAAAGGCTTTGAAACCAAGAGAAGCGGAGAGTTGAAGTTGATTAAGCAGT
TTCAGGGAGAAATCTTCGAGCGCTTTCTGAGGGGAACTCGATTTCTGGGT
GCTATAGGCAAGTTGGCAATGCATGAGTTTCTAGAGGCTGAGAGAGTCAA
AGAAAAGGGCTTAGCCACCATTTACGTCATTGCACGAAATCCAGAAGACA
CGCAGGTAACATCATCTGCGATTCCTGTACAAATCTTCGAGTTTCAGAAG
GAAGTTGTGCGCAGGAGACTATTGAAGAAGTGGTTGAAATGTGCGGACAA
CGATGGTCTCGAACTACGTGAGTTGCTTCACTGGGACTACTACCAGGGAC
GTCTCGCAAACGCCGTGCTCAAGATTGTCAGTATTCCAGCCGCTCTTCAG
GCTGTTGAAAACCAAGTTCCAAGAATTGAGTATCCTCCATGGCTCGTGAA
GAAGTGCAAGGAGCTTGCAGATGTAATGAAGCCACAGAAGCTCTCTTCGT
TCTTCTCTGCCCTTCCGAAAGGGCAGCGGGCTAGAATTTCCGGCAAGGCG
CTGCGGGACGCTATGGATGATACCGCGAAACTTGGCATCGATGATATTGA
GGATCTACCCGTCGGTGCCTGGACCACTGCTCGCGTTGCCAAACGACGAG
CAAAGACTGTAGTAACAAGAAGGCTGCGGAATGAGAGAGAGACCTTCAAG
AAAACACGCACCACTGGAGTTCATCCCGATGAATTGGTTCTCCGAAGCAA
AGCCAAAGATCCCGGTGAGCGAGCGACACAGGGCCGCAACGCAATGCTGC
AATTCACTCGAGCATCTCATTCTGATATTCGTTTGGATTATGCTGGCTGG
GTTCGCTTTGCTAAGCGAGTTTGTCGAGCACAACGTGCCATAAGAGTCCA
ACGATACGCACGGAAAAGAACGATAGCCCAGGTTACAGGGGATGAAGCCG
AACCTCACACCGATGAGGAGAGGGGCTAA
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protein sequence of Ggra6927.t1

>Ggra6927.t1 ID=Ggra6927.t1|Name=Ggra6927.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=643bp
MYTNIILTNRLQPNAIVTPAQCAACDFNGMSECQRYMEWTWRGEHYLASY
GEAEMIQRRTTQEQRDAELRAAAEAAKSAENNDDDRRDTLRYRKRHSPVK
DPKTTRDSSAIPNFNDEEAHGGDQIRSENGTICQGENPSYVDTVREFRNR
RYEYKGLLKKRKKLKVEAKQCEDVGAIKFAEKLVVLYDSLQLAHKCILNS
YYGYVKRKGARWYPMEMAGVVTNTGALIIRRAREFIDKVGLPLELDTDDV
TDNFTNHQYLDLVDPETFEYEQRGECSILFEVDGPYRAMVLPASLEEGKS
IKKRYAVFNDDGSLVELKGFETKRSGELKLIKQFQGEIFERFLRGTRFLG
AIGKLAMHEFLEAERVKEKGLATIYVIARNPEDTQVTSSAIPVQIFEFQK
EVVRRRLLKKWLKCADNDGLELRELLHWDYYQGRLANAVLKIVSIPAALQ
AVENQVPRIEYPPWLVKKCKELADVMKPQKLSSFFSALPKGQRARISGKA
LRDAMDDTAKLGIDDIEDLPVGAWTTARVAKRRAKTVVTRRLRNERETFK
KTRTTGVHPDELVLRSKAKDPGERATQGRNAMLQFTRASHSDIRLDYAGW
VRFAKRVCRAQRAIRVQRYARKRTIAQVTGDEAEPHTDEERG*
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mRNA from alignment at tig00000115_pilon:75805..78057+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6927.t1 ID=Ggra6927.t1|Name=Ggra6927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2253bp|location=Sequence derived from alignment at tig00000115_pilon:75805..78057+ (Gracilaria gracilis GNS1m male)
ATGTATACCAATATCATTTTGACGAACCGTCTTCAACCCAACGCAATTGT
CACACCTGCCCAGTGCGCTGCATGTGACTTCAACGGCATGTCGGAGTGTC
AACGCTACATGGAATGGACCTGGCGAGGTGAGCACTATCTGGCCTCATAC
GGAGAGGCAGAAATGATTCAAAGAAGAACCACCCAGGAGCAACGAGATGC
AGAACTACGCGCTGCTGCTGAGGCAGCAAAATCAGCCGAGAATAATGATG
ACGATAGAAGGGACACTTTGCGGTACAGAAAGCGCCACTCCCCCGTCAAG
GATCCGAAAACAACACGGGATTCTTCAGCCATTCCAAATTTTAATGACGA
AGAAGCCCGTAAGGGTGTGGTGTTTAGATCTCGTTTAAAGAAGTACTGCC
ACCGAAACTATTCGAAGACGGTGGAGACCAGATTCGTTCCGAAAACGGCA
CCATCTGTCAAGGAGAGAACCCTTCTTATGTAGATACCGTGCGTGAATTT
CGAAATCGAAGATACGAATACAAGGGGCTTTTGAAGAAGCGGAAGAAACT
GAAAGTTGAAGCAAAGCAGTGCGAAGACGTCGGTGCTATTAAGTTCGCAG
AGAAGCTTGTTGTCTTGTACGACTCCCTTCAACTTGCACACAAGTGCATT
TTGAATTCGTACTATGGTTACGTAAAGAGAAAGGGCGCTCGGTGGTATCC
CATGGAGATGGCAGGAGTCGTCACCAATACTGGTGCACTCATAATTCGCA
GAGCCCGAGAATTCATAGACAAAGTTGGACTTCCTCTCGAACTCGACACA
GATGGTATTTGGTGTGTATTACCTGTATCTTTTCCAGACAACTTTCGTTC
ACCACAAAATCTGGGAAGAAGATTACTGTCAATTATATATGCTCTGTGTT
CAACGCAGATGTGACGGACAATTTCACAAACCATCAGTATCTAGATTTAG
TGGACCCTGAAACATTCGAGTACGAGCAGAGGGGTGAATGTTCGATCCTT
TTCGAAGTCGACGGCCCATATCGTGCAATGGTCTTACCGGCCTCCTTGGA
GGAAGGCAAAAGCATCAAGAAGCGCTATGCGGTCTTCAATGACGACGGTT
CTCTTGTTGAATTGAAAGGCTTTGAAACCAAGAGAAGCGGAGAGTTGAAG
TTGATTAAGCAGTTTCAGGGAGAAATCTTCGAGCGCTTTCTGAGGGGAAC
TCGATTTCTGGGTGCTATAGGCAAGTTGGCGTAACTTGCAACAAGTGGCT
GGATATAATTACATCAATGGAAGAGGGACTGTCTGATTCCCAGCTCTTAG
AATTGGTGGTAGAGCAGAACAACATGAGTAAGCCATTGCAGGAGTATCTT
CAAGCAGGGCAAAAGAGTTGCGCGATCACTTGCGCAAGCAGAATGCATGA
GTTTCTAGAGGCTGAGAGAGTCAAAGAAAAGGGCTTAGCCACCATTTACG
TCATTGCACGAAATCCAGAAGACACGCAGGTAACATCATCTGCGATTCCT
GTACAAATCTTCGAGTTTCAGAAGGAAGTTGTGCGCAGGAGACTATTGAA
GAAGTGGTTGAAATGTGCGGACAACGATGGTCTCGAACTACGTGAGTTGC
TTCACTGGGACTACTACCAGGGACGTCTCGCAAACGCCGTGCTCAAGATT
GTCAGTATTCCAGCCGCTCTTCAGGCTGTTGAAAACCAAGTTCCAAGAAT
TGAGTATCCTCCATGGCTCGTGAAGAAGTGCAAGGAGCTTGCAGATGTAA
TGAAGCCACAGAAGCTCTCTTCGTTCTTCTCTGCCCTTCCGAAAGGGCAG
CGGGCTAGAATTTCCGGCAAGGCGCTGCGGGACGCTATGGATGATACCGC
GAAACTTGGCATCGATGATATTGAGGATCTACCCGTCGGTGCCTGGACCA
CTGCTCGCGTTGCCAAACGACGAGCAAAGACTGTAGTAACAAGAAGGCTG
CGGAATGAGAGAGAGACCTTCAAGAAAACACGCACCACTGGAGTTCATCC
CGATGAATTGGTTCTCCGAAGCAAAGCCAAAGATCCCGGTGAGCGAGCGA
CACAGGGCCGCAACGCAATGCTGCAATTCACTCGAGCATCTCATTCTGAT
ATTCGTTTGGATTATGCTGGCTGGGTTCGCTTTGCTAAGCGAGTTTGTCG
AGCACAACGTGCCATAAGAGTCCAACGATACGCACGGAAAAGAACGATAG
CCCAGGTTACAGGGGATGAAGCCGAACCTCACACCGATGAGGAGAGGGGC
TAA
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Coding sequence (CDS) from alignment at tig00000115_pilon:75805..78057+

>Ggra6927.t1 ID=Ggra6927.t1|Name=Ggra6927.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1929bp|location=Sequence derived from alignment at tig00000115_pilon:75805..78057+ (Gracilaria gracilis GNS1m male)
ATGTATACCAATATCATTTTGACGAACCGTCTTCAACCCAACGCAATTGT
CACACCTGCCCAGTGCGCTGCATGTGACTTCAACGGCATGTCGGAGTGTC
AACGCTACATGGAATGGACCTGGCGAGGTGAGCACTATCTGGCCTCATAC
GGAGAGGCAGAAATGATTCAAAGAAGAACCACCCAGGAGCAACGAGATGC
AGAACTACGCGCTGCTGCTGAGGCAGCAAAATCAGCCGAGAATAATGATG
ACGATAGAAGGGACACTTTGCGGTACAGAAAGCGCCACTCCCCCGTCAAG
GATCCGAAAACAACACGGGATTCTTCAGCCATTCCAAATTTTAATGACGA
AGAAGCCCACGGTGGAGACCAGATTCGTTCCGAAAACGGCACCATCTGTC
AAGGAGAGAACCCTTCTTATGTAGATACCGTGCGTGAATTTCGAAATCGA
AGATACGAATACAAGGGGCTTTTGAAGAAGCGGAAGAAACTGAAAGTTGA
AGCAAAGCAGTGCGAAGACGTCGGTGCTATTAAGTTCGCAGAGAAGCTTG
TTGTCTTGTACGACTCCCTTCAACTTGCACACAAGTGCATTTTGAATTCG
TACTATGGTTACGTAAAGAGAAAGGGCGCTCGGTGGTATCCCATGGAGAT
GGCAGGAGTCGTCACCAATACTGGTGCACTCATAATTCGCAGAGCCCGAG
AATTCATAGACAAAGTTGGACTTCCTCTCGAACTCGACACAGATGATGTG
ACGGACAATTTCACAAACCATCAGTATCTAGATTTAGTGGACCCTGAAAC
ATTCGAGTACGAGCAGAGGGGTGAATGTTCGATCCTTTTCGAAGTCGACG
GCCCATATCGTGCAATGGTCTTACCGGCCTCCTTGGAGGAAGGCAAAAGC
ATCAAGAAGCGCTATGCGGTCTTCAATGACGACGGTTCTCTTGTTGAATT
GAAAGGCTTTGAAACCAAGAGAAGCGGAGAGTTGAAGTTGATTAAGCAGT
TTCAGGGAGAAATCTTCGAGCGCTTTCTGAGGGGAACTCGATTTCTGGGT
GCTATAGGCAAGTTGGCAATGCATGAGTTTCTAGAGGCTGAGAGAGTCAA
AGAAAAGGGCTTAGCCACCATTTACGTCATTGCACGAAATCCAGAAGACA
CGCAGGTAACATCATCTGCGATTCCTGTACAAATCTTCGAGTTTCAGAAG
GAAGTTGTGCGCAGGAGACTATTGAAGAAGTGGTTGAAATGTGCGGACAA
CGATGGTCTCGAACTACGTGAGTTGCTTCACTGGGACTACTACCAGGGAC
GTCTCGCAAACGCCGTGCTCAAGATTGTCAGTATTCCAGCCGCTCTTCAG
GCTGTTGAAAACCAAGTTCCAAGAATTGAGTATCCTCCATGGCTCGTGAA
GAAGTGCAAGGAGCTTGCAGATGTAATGAAGCCACAGAAGCTCTCTTCGT
TCTTCTCTGCCCTTCCGAAAGGGCAGCGGGCTAGAATTTCCGGCAAGGCG
CTGCGGGACGCTATGGATGATACCGCGAAACTTGGCATCGATGATATTGA
GGATCTACCCGTCGGTGCCTGGACCACTGCTCGCGTTGCCAAACGACGAG
CAAAGACTGTAGTAACAAGAAGGCTGCGGAATGAGAGAGAGACCTTCAAG
AAAACACGCACCACTGGAGTTCATCCCGATGAATTGGTTCTCCGAAGCAA
AGCCAAAGATCCCGGTGAGCGAGCGACACAGGGCCGCAACGCAATGCTGC
AATTCACTCGAGCATCTCATTCTGATATTCGTTTGGATTATGCTGGCTGG
GTTCGCTTTGCTAAGCGAGTTTGTCGAGCACAACGTGCCATAAGAGTCCA
ACGATACGCACGGAAAAGAACGATAGCCCAGGTTACAGGGGATGAAGCCG
AACCTCACACCGATGAGGAGAGGGGCTAA
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