Ggra6932.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6932.t1
Unique NameGgra6932.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length579
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:167474..169591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002503206.1
PFAMsCreatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C
Max annot lvl3041|Chlorophyta
KEGG koko:K01262
Evalue6.71e-137
EggNOG OGsCOG0006@1|root,KOG2413@2759|Eukaryota,37JYT@33090|Viridiplantae,34GQK@3041|Chlorophyta
EC3.4.11.9
DescriptionBelongs to the peptidase M24B family
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6932Ggra6932Gracilaria gracilis GNS1m malegenetig00000115_pilon 167474..169591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6932.t1Ggra6932.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 167474..169591 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6932.t1.stop1Ggra6932.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 167474..167476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6932.t1.CDS1Ggra6932.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 167474..167936 -
Ggra6932.t1.CDS2Ggra6932.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 168135..168271 -
Ggra6932.t1.CDS3Ggra6932.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000115_pilon 168455..169591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6932.t1.exon1Ggra6932.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 167474..167936 -
Ggra6932.t1.exon2Ggra6932.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 168135..168271 -
Ggra6932.t1.exon3Ggra6932.t1.exon3Gracilaria gracilis GNS1m maleexontig00000115_pilon 168455..169591 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6932.t1.intron1Ggra6932.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 167937..168134 -
Ggra6932.t1.intron2Ggra6932.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000115_pilon 168272..168454 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6932.t1.start1Ggra6932.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 169589..169591 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6932.t1 ID=Ggra6932.t1|Name=Ggra6932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp
MALVCLSDAAKLGAMMKPFSKSRTSQHVLAFASLASFRTTKTPFVQSSLF
RSRASNPRIANVSTVSRRSPHVCWRAVASQSAPAATSPRLAALREQLRKH
NVEAMVIPTVDPHFSEYAPACYAYRNFISGFTGSAGTALVTLDEAYLWTD
GRYFLQAEQQLDSNWKLMKAGLPDTPTIPEFIANSLPKGTRVGIDPFLHS
TQFLKKVRDASGEDEGVTVTFLASNPVEAVWGSDRPPLPDGQVRVHDIQY
AGKSVKEKLDSLRESMADKDCTHMILSMLDEVCWLYNIRGSDIPHNPVVL
AYALISKDTSKIYVSASKLGSEVVDFLRSNGVQVLAYEQVLQDLRDIASK
EQTVWLDPSSTSVALKEALGEFALAEETPDGFLEESFPTIAGFGAHGAII
HYNPSEGPSAEVGNKEVFLLDSGGQHGTGHGVGACLNVHEGPHSISPRPS
SNVAALKEGMIVSNEPGYYEDGRFGIRIENLLYVVKRQTAHQFGGKNYLG
FERLTFVPIDTSMIKWEILSETEVEWINNYHQAVWEKLSPRMEDGKYKDW
LLEKTRAVHRANQASAFQRQAERTTSSA*
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spliced messenger RNA

>Ggra6932.t1 ID=Ggra6932.t1|Name=Ggra6932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000115_pilon:167474..169591- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGTGTGCCTCAGTGACGCAGCCAAACTTGGAGCCATGATGAA
GCCGTTCTCCAAGTCTAGAACGTCTCAACACGTGCTTGCTTTCGCAAGTC
TTGCTTCCTTTCGAACAACTAAAACTCCGTTCGTGCAGTCTTCGCTGTTT
CGTTCCAGAGCCTCCAACCCCCGGATTGCGAACGTTTCCACAGTCTCACG
TCGCAGCCCCCACGTATGTTGGCGCGCAGTGGCCTCACAAAGCGCGCCCG
CCGCTACATCGCCGCGATTAGCTGCGCTGAGGGAACAACTTCGAAAGCAC
AATGTTGAGGCAATGGTGATTCCCACAGTTGATCCTCATTTCAGTGAATA
TGCTCCGGCCTGCTATGCTTACCGAAACTTCATTTCCGGTTTCACCGGCT
CAGCTGGTACGGCGTTAGTTACTTTGGACGAAGCATACCTTTGGACTGAT
GGTAGGTATTTCTTACAAGCAGAGCAGCAGTTGGATTCCAACTGGAAGTT
GATGAAGGCTGGCCTGCCGGATACTCCGACTATACCAGAATTCATTGCAA
ACAGTTTACCAAAAGGTACTCGCGTTGGAATCGATCCTTTCTTGCACTCC
ACCCAGTTCCTCAAAAAAGTTCGAGACGCCTCTGGCGAGGATGAAGGCGT
CACAGTTACGTTTTTGGCTTCTAATCCTGTCGAGGCCGTTTGGGGATCTG
ACAGACCACCTCTTCCAGATGGGCAAGTGCGGGTGCACGACATTCAATAC
GCCGGTAAATCGGTCAAAGAAAAACTCGACTCCTTACGGGAGTCGATGGC
CGACAAAGATTGCACCCATATGATTCTATCCATGCTTGATGAGGTATGTT
GGCTGTACAACATTCGAGGAAGCGATATCCCACATAATCCTGTTGTTCTA
GCGTACGCCCTTATCAGTAAGGATACGTCAAAGATATACGTTAGCGCCTC
CAAGCTTGGTTCCGAGGTGGTTGATTTCTTGCGCTCAAATGGTGTACAAG
TACTCGCATATGAGCAGGTATTGCAAGATTTGCGTGACATCGCCTCAAAA
GAGCAAACAGTGTGGCTTGATCCAAGCTCGACCTCGGTAGCGCTGAAGGA
AGCCCTCGGAGAGTTTGCTCTAGCGGAAGAAACACCCGATGGGTTTTTGG
AGGAATCCTTCCCAACGATCGCTGGATTTGGCGCTCATGGAGCTATCATT
CACTACAACCCATCTGAAGGCCCTTCCGCAGAGGTAGGCAACAAAGAAGT
ATTTCTGTTAGACTCAGGTGGTCAGCATGGCACTGGGCACGGGGTTGGTG
CATGTTTGAATGTTCATGAAGGTCCCCACAGTATTTCTCCCCGTCCAAGT
TCGAATGTAGCGGCGCTGAAAGAAGGAATGATTGTGAGCAATGAACCTGG
GTACTATGAAGACGGACGATTTGGTATCCGCATTGAGAACTTGCTTTACG
TTGTGAAACGCCAGACTGCCCACCAATTTGGGGGAAAGAACTACCTTGGG
TTCGAAAGGCTGACCTTTGTACCAATAGATACATCTATGATCAAGTGGGA
AATTTTGTCAGAAACCGAAGTTGAATGGATCAACAATTATCACCAGGCTG
TGTGGGAGAAGCTTTCCCCGAGAATGGAGGATGGGAAATACAAAGATTGG
TTACTGGAAAAGACACGCGCAGTGCATAGAGCTAACCAGGCATCAGCGTT
CCAACGACAGGCGGAGAGGACCACATCCTCAGCATAA
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protein sequence of Ggra6932.t1

>Ggra6932.t1 ID=Ggra6932.t1|Name=Ggra6932.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=579bp
MALVCLSDAAKLGAMMKPFSKSRTSQHVLAFASLASFRTTKTPFVQSSLF
RSRASNPRIANVSTVSRRSPHVCWRAVASQSAPAATSPRLAALREQLRKH
NVEAMVIPTVDPHFSEYAPACYAYRNFISGFTGSAGTALVTLDEAYLWTD
GRYFLQAEQQLDSNWKLMKAGLPDTPTIPEFIANSLPKGTRVGIDPFLHS
TQFLKKVRDASGEDEGVTVTFLASNPVEAVWGSDRPPLPDGQVRVHDIQY
AGKSVKEKLDSLRESMADKDCTHMILSMLDEVCWLYNIRGSDIPHNPVVL
AYALISKDTSKIYVSASKLGSEVVDFLRSNGVQVLAYEQVLQDLRDIASK
EQTVWLDPSSTSVALKEALGEFALAEETPDGFLEESFPTIAGFGAHGAII
HYNPSEGPSAEVGNKEVFLLDSGGQHGTGHGVGACLNVHEGPHSISPRPS
SNVAALKEGMIVSNEPGYYEDGRFGIRIENLLYVVKRQTAHQFGGKNYLG
FERLTFVPIDTSMIKWEILSETEVEWINNYHQAVWEKLSPRMEDGKYKDW
LLEKTRAVHRANQASAFQRQAERTTSSA*
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mRNA from alignment at tig00000115_pilon:167474..169591-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6932.t1 ID=Ggra6932.t1|Name=Ggra6932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2118bp|location=Sequence derived from alignment at tig00000115_pilon:167474..169591- (Gracilaria gracilis GNS1m male)
ATGGCGCTCGTGTGCCTCAGTGACGCAGCCAAACTTGGAGCCATGATGAA
GCCGTTCTCCAAGTCTAGAACGTCTCAACACGTGCTTGCTTTCGCAAGTC
TTGCTTCCTTTCGAACAACTAAAACTCCGTTCGTGCAGTCTTCGCTGTTT
CGTTCCAGAGCCTCCAACCCCCGGATTGCGAACGTTTCCACAGTCTCACG
TCGCAGCCCCCACGTATGTTGGCGCGCAGTGGCCTCACAAAGCGCGCCCG
CCGCTACATCGCCGCGATTAGCTGCGCTGAGGGAACAACTTCGAAAGCAC
AATGTTGAGGCAATGGTGATTCCCACAGTTGATCCTCATTTCAGTGAATA
TGCTCCGGCCTGCTATGCTTACCGAAACTTCATTTCCGGTTTCACCGGCT
CAGCTGGTACGGCGTTAGTTACTTTGGACGAAGCATACCTTTGGACTGAT
GGTAGGTATTTCTTACAAGCAGAGCAGCAGTTGGATTCCAACTGGAAGTT
GATGAAGGCTGGCCTGCCGGATACTCCGACTATACCAGAATTCATTGCAA
ACAGTTTACCAAAAGGTACTCGCGTTGGAATCGATCCTTTCTTGCACTCC
ACCCAGTTCCTCAAAAAAGTTCGAGACGCCTCTGGCGAGGATGAAGGCGT
CACAGTTACGTTTTTGGCTTCTAATCCTGTCGAGGCCGTTTGGGGATCTG
ACAGACCACCTCTTCCAGATGGGCAAGTGCGGGTGCACGACATTCAATAC
GCCGGTAAATCGGTCAAAGAAAAACTCGACTCCTTACGGGAGTCGATGGC
CGACAAAGATTGCACCCATATGATTCTATCCATGCTTGATGAGGTATGTT
GGCTGTACAACATTCGAGGAAGCGATATCCCACATAATCCTGTTGTTCTA
GCGTACGCCCTTATCAGTAAGGATACGTCAAAGATATACGTTAGCGCCTC
CAAGCTTGGTTCCGAGGTGGTTGATTTCTTGCGCTCAAATGGTGTACAAG
TACTCGCATATGAGCAGGTATTGCAAGATTTGCGTGACATCGCCTCAAAA
GAGCAAACAGTGTGGCTTGATCCAAGCTCGACCTCGGTAGCGCTGAAGGA
AGCCCTCGGAGAGTTTGCTCTAGCGGAAGAAACACCCGTAAGGATGGCGA
AAGCGTGCAAGAATGATGCAGAACTGCAAGGAATGCAAGAGGCGCATATT
CGCGACGGTGTGGCCCTCTCATCGTTCCTATGTTGGCTCGAAGACTACGT
GAATTCTGGTGGAGCTCCTATATCCGAGTTCAAGGCGGCCATGAAACTAA
AACAGTTTCGCGCCGAACAGGATGGGTTTTTGGAGGAATCCTTCCCAACG
ATCGCTGGATTTGGCGCTCATGGAGCTATCATTCACTACAACCCATCTGA
AGGCCCTTCCGCAGAGGTAGGCAACAAAGAAGTATTTCTGTTAGACTCAG
GTGGTCAGTATGTAGACGGAACGACCGATGTAACCCGAACAATGCACCTT
GGAGGAAGTGCTACGGATCATGAGAAAGAGTGCTTCACGCGAGTTTTGCA
AGGCCACATCCGAATTGACTCAGTAGTGTTCCCAGACGACACGACTGGGC
TCATGTTGGATACCCTTGCCCGTGTCTCGTTATGGAACGTCGGGTTGGAC
TACAGGCATGGCACTGGGCACGGGGTTGGTGCATGTTTGAATGTTCATGA
AGGTCCCCACAGTATTTCTCCCCGTCCAAGTTCGAATGTAGCGGCGCTGA
AAGAAGGAATGATTGTGAGCAATGAACCTGGGTACTATGAAGACGGACGA
TTTGGTATCCGCATTGAGAACTTGCTTTACGTTGTGAAACGCCAGACTGC
CCACCAATTTGGGGGAAAGAACTACCTTGGGTTCGAAAGGCTGACCTTTG
TACCAATAGATACATCTATGATCAAGTGGGAAATTTTGTCAGAAACCGAA
GTTGAATGGATCAACAATTATCACCAGGCTGTGTGGGAGAAGCTTTCCCC
GAGAATGGAGGATGGGAAATACAAAGATTGGTTACTGGAAAAGACACGCG
CAGTGCATAGAGCTAACCAGGCATCAGCGTTCCAACGACAGGCGGAGAGG
ACCACATCCTCAGCATAA
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Coding sequence (CDS) from alignment at tig00000115_pilon:167474..169591-

>Ggra6932.t1 ID=Ggra6932.t1|Name=Ggra6932.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00000115_pilon:167474..169591- (Gracilaria gracilis GNS1m male)
ATGGCGCTCGTGTGCCTCAGTGACGCAGCCAAACTTGGAGCCATGATGAA
GCCGTTCTCCAAGTCTAGAACGTCTCAACACGTGCTTGCTTTCGCAAGTC
TTGCTTCCTTTCGAACAACTAAAACTCCGTTCGTGCAGTCTTCGCTGTTT
CGTTCCAGAGCCTCCAACCCCCGGATTGCGAACGTTTCCACAGTCTCACG
TCGCAGCCCCCACGTATGTTGGCGCGCAGTGGCCTCACAAAGCGCGCCCG
CCGCTACATCGCCGCGATTAGCTGCGCTGAGGGAACAACTTCGAAAGCAC
AATGTTGAGGCAATGGTGATTCCCACAGTTGATCCTCATTTCAGTGAATA
TGCTCCGGCCTGCTATGCTTACCGAAACTTCATTTCCGGTTTCACCGGCT
CAGCTGGTACGGCGTTAGTTACTTTGGACGAAGCATACCTTTGGACTGAT
GGTAGGTATTTCTTACAAGCAGAGCAGCAGTTGGATTCCAACTGGAAGTT
GATGAAGGCTGGCCTGCCGGATACTCCGACTATACCAGAATTCATTGCAA
ACAGTTTACCAAAAGGTACTCGCGTTGGAATCGATCCTTTCTTGCACTCC
ACCCAGTTCCTCAAAAAAGTTCGAGACGCCTCTGGCGAGGATGAAGGCGT
CACAGTTACGTTTTTGGCTTCTAATCCTGTCGAGGCCGTTTGGGGATCTG
ACAGACCACCTCTTCCAGATGGGCAAGTGCGGGTGCACGACATTCAATAC
GCCGGTAAATCGGTCAAAGAAAAACTCGACTCCTTACGGGAGTCGATGGC
CGACAAAGATTGCACCCATATGATTCTATCCATGCTTGATGAGGTATGTT
GGCTGTACAACATTCGAGGAAGCGATATCCCACATAATCCTGTTGTTCTA
GCGTACGCCCTTATCAGTAAGGATACGTCAAAGATATACGTTAGCGCCTC
CAAGCTTGGTTCCGAGGTGGTTGATTTCTTGCGCTCAAATGGTGTACAAG
TACTCGCATATGAGCAGGTATTGCAAGATTTGCGTGACATCGCCTCAAAA
GAGCAAACAGTGTGGCTTGATCCAAGCTCGACCTCGGTAGCGCTGAAGGA
AGCCCTCGGAGAGTTTGCTCTAGCGGAAGAAACACCCGATGGGTTTTTGG
AGGAATCCTTCCCAACGATCGCTGGATTTGGCGCTCATGGAGCTATCATT
CACTACAACCCATCTGAAGGCCCTTCCGCAGAGGTAGGCAACAAAGAAGT
ATTTCTGTTAGACTCAGGTGGTCAGCATGGCACTGGGCACGGGGTTGGTG
CATGTTTGAATGTTCATGAAGGTCCCCACAGTATTTCTCCCCGTCCAAGT
TCGAATGTAGCGGCGCTGAAAGAAGGAATGATTGTGAGCAATGAACCTGG
GTACTATGAAGACGGACGATTTGGTATCCGCATTGAGAACTTGCTTTACG
TTGTGAAACGCCAGACTGCCCACCAATTTGGGGGAAAGAACTACCTTGGG
TTCGAAAGGCTGACCTTTGTACCAATAGATACATCTATGATCAAGTGGGA
AATTTTGTCAGAAACCGAAGTTGAATGGATCAACAATTATCACCAGGCTG
TGTGGGAGAAGCTTTCCCCGAGAATGGAGGATGGGAAATACAAAGATTGG
TTACTGGAAAAGACACGCGCAGTGCATAGAGCTAACCAGGCATCAGCGTT
CCAACGACAGGCGGAGAGGACCACATCCTCAGCATAA
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