Ggra6933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6933.t1
Unique Name	Ggra6933.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	636

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000115_pilon	contig	tig00000115_pilon:170659..172566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003057787.1
PFAMs	CNOT1_CAF1_bind,CNOT1_HEAT,CNOT1_TTP_bind,DUF3819,Not1
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K12604
KEGG Pathway	ko03018,map03018
Evalue	7.68e-95
EggNOG OGs	COG5103@1\|root,KOG1831@2759\|Eukaryota,37KCN@33090\|Viridiplantae,34GYV@3041\|Chlorophyta
Description	CCR4-NOT transcription complex subunit 1 TTP binding domain
COG category	K
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6933	Ggra6933	Gracilaria gracilis GNS1m male	gene	tig00000115_pilon 170659..172566 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6933.t1.start1	Ggra6933.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000115_pilon 170659..170661 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6933.t1.CDS1	Ggra6933.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000115_pilon 170659..172566 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6933.t1.exon1	Ggra6933.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000115_pilon 170659..172566 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6933.t1.stop1	Ggra6933.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000115_pilon 172564..172566 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6933.t1	Ggra6933.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000115_pilon 170659..172566 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000115_pilon:170659..172566+
coding sequence from alignment at tig00000115_pilon:170659..172566+

mRNA sequence

>Ggra6933.t1 ID=Ggra6933.t1|Name=Ggra6933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp
MPMSAEDLCSLVESARHVVHKPGNANTSINVNVESHTNTTKHARENENSD
STTIKEATAQLLLDWHRILTADPDRIITDQSVLSFIAQTRSMSLANGEAA
ERFFRIAVEIVCSATFHALNSGWGYSNVPPEILDAPYSAAESLVYLVSTI
CHTDRSLSLPSRIGAVQLMYYILVAVAKDAMLRCAKGDLRCHFRLLSCIM
NQLSAGSAARERNAAENVEANLDRLVSAYSRKLEDASSGTKGVDFIENEE
GGMLRWILDLGSVSHHEKQVNLNNLQVQGALVGVLSMCSPAQIPRFAFYW
LELLANKEFLPCLLSVRNVNGWPLFRHLLMSFLRFMSGYLNKGEPLPAVV
RKLYNGLLRFLLVLLHDFPEFLCAYHLDFCHTIPSRCVQLRNLILSSFPK
QMRLPDPFAPDLDVKRLPDMMNPPVILSDFITPLQESGVKAMIDSYLNPA
ERTLGQRRLADLGKYICRTTDSGEVEVNLVALNSLMVYLAQNASSSNEQY
SRNSSSTEVIRLLASQLDCEGQILLFNALANQLRYPNSHTRYFSNIILML
FRETSSESIKEEIAKVLVERLIANRPHPWGLLITFVELLKNPDYSFWSYS
FVTCAPEIEELFQNVSRYCMAPSFQNKRQSLVAAQ*

spliced messenger RNA

>Ggra6933.t1 ID=Ggra6933.t1|Name=Ggra6933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1908bp|location=Sequence derived from alignment at tig00000115_pilon:170659..172566+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTATGAGTGCGGAGGACCTGTGTTCCCTTGTTGAATCGGCAAGGCA
TGTAGTCCACAAACCCGGGAATGCGAACACTTCAATTAATGTGAACGTAG
AGTCCCACACGAACACGACGAAGCACGCAAGAGAAAATGAGAACAGTGAT
TCGACAACAATCAAGGAGGCTACGGCCCAACTTCTGCTGGACTGGCACAG
AATTTTGACTGCAGATCCGGATCGAATTATAACCGACCAATCTGTTCTTT
CATTTATAGCGCAAACTCGCAGCATGTCTTTGGCAAATGGTGAAGCTGCG
GAAAGGTTTTTCAGAATTGCAGTAGAGATTGTTTGCTCTGCGACATTCCA
CGCGCTTAACTCGGGATGGGGATACTCAAATGTACCACCAGAGATTCTCG
ACGCCCCTTACTCGGCTGCGGAAAGTCTTGTTTATTTAGTATCGACCATA
TGTCATACTGATCGGTCTCTATCTTTGCCGAGTAGGATCGGGGCAGTGCA
ACTGATGTACTACATTTTAGTCGCTGTTGCGAAGGACGCGATGTTGCGAT
GCGCCAAGGGAGACTTGCGATGTCATTTTCGTTTACTCTCTTGTATTATG
AACCAGCTTTCTGCTGGTTCAGCCGCTAGAGAGCGCAATGCAGCAGAGAA
CGTGGAGGCTAATCTAGACCGCCTTGTATCTGCCTACTCTCGCAAACTGG
AAGACGCCTCTTCGGGGACAAAGGGCGTCGACTTCATTGAGAATGAAGAA
GGCGGAATGCTTCGATGGATTCTGGATCTTGGGTCTGTAAGTCACCATGA
AAAGCAAGTCAATCTCAACAACTTGCAAGTACAAGGAGCGTTGGTGGGGG
TCTTAAGCATGTGCTCGCCTGCACAGATACCTCGCTTTGCCTTCTATTGG
TTGGAGTTGTTGGCGAACAAGGAGTTCTTACCGTGTCTTCTTTCTGTTAG
AAATGTGAATGGTTGGCCTTTGTTCCGACATTTGCTCATGTCCTTCTTGA
GGTTCATGTCTGGATACCTGAATAAGGGAGAGCCTTTACCCGCCGTTGTA
AGGAAGTTATACAACGGATTGTTGCGGTTTCTTCTGGTTCTGCTTCACGA
CTTTCCTGAATTCCTTTGCGCATATCATTTGGACTTTTGTCACACAATAC
CAAGCCGTTGCGTTCAGCTAAGGAACTTGATTCTTTCATCTTTCCCCAAG
CAGATGCGTCTTCCGGATCCATTTGCCCCGGACTTGGACGTGAAAAGATT
ACCAGACATGATGAACCCGCCTGTTATTCTTTCTGACTTCATAACACCGT
TACAAGAAAGTGGTGTGAAGGCTATGATTGATTCCTACTTGAATCCGGCA
GAAAGAACTCTTGGACAGAGAAGATTGGCAGATCTTGGGAAGTATATCTG
TAGGACTACTGACTCCGGAGAAGTTGAAGTTAACTTGGTGGCTCTCAACT
CACTTATGGTGTATTTGGCCCAGAATGCGTCAAGTTCAAATGAGCAATAC
AGCAGAAACAGTTCCTCTACTGAAGTCATTCGTCTACTTGCTTCTCAACT
AGACTGCGAAGGCCAGATACTGTTGTTTAACGCTCTTGCCAATCAGCTTC
GGTATCCAAACAGTCATACGAGATACTTCAGCAACATAATACTGATGCTG
TTTCGAGAAACAAGTAGTGAATCAATCAAGGAAGAAATAGCAAAGGTTCT
TGTTGAAAGGCTGATTGCGAACAGACCACATCCCTGGGGGCTTCTGATAA
CTTTCGTGGAGCTTCTGAAGAATCCGGACTACAGCTTTTGGAGTTATTCG
TTTGTCACATGTGCACCGGAAATAGAGGAGCTATTCCAGAATGTATCGAG
GTACTGCATGGCGCCTTCATTCCAGAACAAGCGTCAATCCTTGGTGGCAG
CGCAGTAG

protein sequence of Ggra6933.t1

>Ggra6933.t1 ID=Ggra6933.t1|Name=Ggra6933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=636bp
MPMSAEDLCSLVESARHVVHKPGNANTSINVNVESHTNTTKHARENENSD
STTIKEATAQLLLDWHRILTADPDRIITDQSVLSFIAQTRSMSLANGEAA
ERFFRIAVEIVCSATFHALNSGWGYSNVPPEILDAPYSAAESLVYLVSTI
CHTDRSLSLPSRIGAVQLMYYILVAVAKDAMLRCAKGDLRCHFRLLSCIM
NQLSAGSAARERNAAENVEANLDRLVSAYSRKLEDASSGTKGVDFIENEE
GGMLRWILDLGSVSHHEKQVNLNNLQVQGALVGVLSMCSPAQIPRFAFYW
LELLANKEFLPCLLSVRNVNGWPLFRHLLMSFLRFMSGYLNKGEPLPAVV
RKLYNGLLRFLLVLLHDFPEFLCAYHLDFCHTIPSRCVQLRNLILSSFPK
QMRLPDPFAPDLDVKRLPDMMNPPVILSDFITPLQESGVKAMIDSYLNPA
ERTLGQRRLADLGKYICRTTDSGEVEVNLVALNSLMVYLAQNASSSNEQY
SRNSSSTEVIRLLASQLDCEGQILLFNALANQLRYPNSHTRYFSNIILML
FRETSSESIKEEIAKVLVERLIANRPHPWGLLITFVELLKNPDYSFWSYS
FVTCAPEIEELFQNVSRYCMAPSFQNKRQSLVAAQ*

mRNA from alignment at tig00000115_pilon:170659..172566+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6933.t1 ID=Ggra6933.t1|Name=Ggra6933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1908bp|location=Sequence derived from alignment at tig00000115_pilon:170659..172566+ (Gracilaria gracilis GNS1m male)
ATGCCTATGAGTGCGGAGGACCTGTGTTCCCTTGTTGAATCGGCAAGGCA
TGTAGTCCACAAACCCGGGAATGCGAACACTTCAATTAATGTGAACGTAG
AGTCCCACACGAACACGACGAAGCACGCAAGAGAAAATGAGAACAGTGAT
TCGACAACAATCAAGGAGGCTACGGCCCAACTTCTGCTGGACTGGCACAG
AATTTTGACTGCAGATCCGGATCGAATTATAACCGACCAATCTGTTCTTT
CATTTATAGCGCAAACTCGCAGCATGTCTTTGGCAAATGGTGAAGCTGCG
GAAAGGTTTTTCAGAATTGCAGTAGAGATTGTTTGCTCTGCGACATTCCA
CGCGCTTAACTCGGGATGGGGATACTCAAATGTACCACCAGAGATTCTCG
ACGCCCCTTACTCGGCTGCGGAAAGTCTTGTTTATTTAGTATCGACCATA
TGTCATACTGATCGGTCTCTATCTTTGCCGAGTAGGATCGGGGCAGTGCA
ACTGATGTACTACATTTTAGTCGCTGTTGCGAAGGACGCGATGTTGCGAT
GCGCCAAGGGAGACTTGCGATGTCATTTTCGTTTACTCTCTTGTATTATG
AACCAGCTTTCTGCTGGTTCAGCCGCTAGAGAGCGCAATGCAGCAGAGAA
CGTGGAGGCTAATCTAGACCGCCTTGTATCTGCCTACTCTCGCAAACTGG
AAGACGCCTCTTCGGGGACAAAGGGCGTCGACTTCATTGAGAATGAAGAA
GGCGGAATGCTTCGATGGATTCTGGATCTTGGGTCTGTAAGTCACCATGA
AAAGCAAGTCAATCTCAACAACTTGCAAGTACAAGGAGCGTTGGTGGGGG
TCTTAAGCATGTGCTCGCCTGCACAGATACCTCGCTTTGCCTTCTATTGG
TTGGAGTTGTTGGCGAACAAGGAGTTCTTACCGTGTCTTCTTTCTGTTAG
AAATGTGAATGGTTGGCCTTTGTTCCGACATTTGCTCATGTCCTTCTTGA
GGTTCATGTCTGGATACCTGAATAAGGGAGAGCCTTTACCCGCCGTTGTA
AGGAAGTTATACAACGGATTGTTGCGGTTTCTTCTGGTTCTGCTTCACGA
CTTTCCTGAATTCCTTTGCGCATATCATTTGGACTTTTGTCACACAATAC
CAAGCCGTTGCGTTCAGCTAAGGAACTTGATTCTTTCATCTTTCCCCAAG
CAGATGCGTCTTCCGGATCCATTTGCCCCGGACTTGGACGTGAAAAGATT
ACCAGACATGATGAACCCGCCTGTTATTCTTTCTGACTTCATAACACCGT
TACAAGAAAGTGGTGTGAAGGCTATGATTGATTCCTACTTGAATCCGGCA
GAAAGAACTCTTGGACAGAGAAGATTGGCAGATCTTGGGAAGTATATCTG
TAGGACTACTGACTCCGGAGAAGTTGAAGTTAACTTGGTGGCTCTCAACT
CACTTATGGTGTATTTGGCCCAGAATGCGTCAAGTTCAAATGAGCAATAC
AGCAGAAACAGTTCCTCTACTGAAGTCATTCGTCTACTTGCTTCTCAACT
AGACTGCGAAGGCCAGATACTGTTGTTTAACGCTCTTGCCAATCAGCTTC
GGTATCCAAACAGTCATACGAGATACTTCAGCAACATAATACTGATGCTG
TTTCGAGAAACAAGTAGTGAATCAATCAAGGAAGAAATAGCAAAGGTTCT
TGTTGAAAGGCTGATTGCGAACAGACCACATCCCTGGGGGCTTCTGATAA
CTTTCGTGGAGCTTCTGAAGAATCCGGACTACAGCTTTTGGAGTTATTCG
TTTGTCACATGTGCACCGGAAATAGAGGAGCTATTCCAGAATGTATCGAG
GTACTGCATGGCGCCTTCATTCCAGAACAAGCGTCAATCCTTGGTGGCAG
CGCAGTAG

Coding sequence (CDS) from alignment at tig00000115_pilon:170659..172566+

>Ggra6933.t1 ID=Ggra6933.t1|Name=Ggra6933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1908bp|location=Sequence derived from alignment at tig00000115_pilon:170659..172566+ (Gracilaria gracilis GNS1m male)
ATGCCTATGAGTGCGGAGGACCTGTGTTCCCTTGTTGAATCGGCAAGGCA
TGTAGTCCACAAACCCGGGAATGCGAACACTTCAATTAATGTGAACGTAG
AGTCCCACACGAACACGACGAAGCACGCAAGAGAAAATGAGAACAGTGAT
TCGACAACAATCAAGGAGGCTACGGCCCAACTTCTGCTGGACTGGCACAG
AATTTTGACTGCAGATCCGGATCGAATTATAACCGACCAATCTGTTCTTT
CATTTATAGCGCAAACTCGCAGCATGTCTTTGGCAAATGGTGAAGCTGCG
GAAAGGTTTTTCAGAATTGCAGTAGAGATTGTTTGCTCTGCGACATTCCA
CGCGCTTAACTCGGGATGGGGATACTCAAATGTACCACCAGAGATTCTCG
ACGCCCCTTACTCGGCTGCGGAAAGTCTTGTTTATTTAGTATCGACCATA
TGTCATACTGATCGGTCTCTATCTTTGCCGAGTAGGATCGGGGCAGTGCA
ACTGATGTACTACATTTTAGTCGCTGTTGCGAAGGACGCGATGTTGCGAT
GCGCCAAGGGAGACTTGCGATGTCATTTTCGTTTACTCTCTTGTATTATG
AACCAGCTTTCTGCTGGTTCAGCCGCTAGAGAGCGCAATGCAGCAGAGAA
CGTGGAGGCTAATCTAGACCGCCTTGTATCTGCCTACTCTCGCAAACTGG
AAGACGCCTCTTCGGGGACAAAGGGCGTCGACTTCATTGAGAATGAAGAA
GGCGGAATGCTTCGATGGATTCTGGATCTTGGGTCTGTAAGTCACCATGA
AAAGCAAGTCAATCTCAACAACTTGCAAGTACAAGGAGCGTTGGTGGGGG
TCTTAAGCATGTGCTCGCCTGCACAGATACCTCGCTTTGCCTTCTATTGG
TTGGAGTTGTTGGCGAACAAGGAGTTCTTACCGTGTCTTCTTTCTGTTAG
AAATGTGAATGGTTGGCCTTTGTTCCGACATTTGCTCATGTCCTTCTTGA
GGTTCATGTCTGGATACCTGAATAAGGGAGAGCCTTTACCCGCCGTTGTA
AGGAAGTTATACAACGGATTGTTGCGGTTTCTTCTGGTTCTGCTTCACGA
CTTTCCTGAATTCCTTTGCGCATATCATTTGGACTTTTGTCACACAATAC
CAAGCCGTTGCGTTCAGCTAAGGAACTTGATTCTTTCATCTTTCCCCAAG
CAGATGCGTCTTCCGGATCCATTTGCCCCGGACTTGGACGTGAAAAGATT
ACCAGACATGATGAACCCGCCTGTTATTCTTTCTGACTTCATAACACCGT
TACAAGAAAGTGGTGTGAAGGCTATGATTGATTCCTACTTGAATCCGGCA
GAAAGAACTCTTGGACAGAGAAGATTGGCAGATCTTGGGAAGTATATCTG
TAGGACTACTGACTCCGGAGAAGTTGAAGTTAACTTGGTGGCTCTCAACT
CACTTATGGTGTATTTGGCCCAGAATGCGTCAAGTTCAAATGAGCAATAC
AGCAGAAACAGTTCCTCTACTGAAGTCATTCGTCTACTTGCTTCTCAACT
AGACTGCGAAGGCCAGATACTGTTGTTTAACGCTCTTGCCAATCAGCTTC
GGTATCCAAACAGTCATACGAGATACTTCAGCAACATAATACTGATGCTG
TTTCGAGAAACAAGTAGTGAATCAATCAAGGAAGAAATAGCAAAGGTTCT
TGTTGAAAGGCTGATTGCGAACAGACCACATCCCTGGGGGCTTCTGATAA
CTTTCGTGGAGCTTCTGAAGAATCCGGACTACAGCTTTTGGAGTTATTCG
TTTGTCACATGTGCACCGGAAATAGAGGAGCTATTCCAGAATGTATCGAG
GTACTGCATGGCGCCTTCATTCCAGAACAAGCGTCAATCCTTGGTGGCAG
CGCAGTAG