Ggra6924.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6924.t1
Unique NameGgra6924.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:21019..22313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6924Ggra6924Gracilaria gracilis GNS1m malegenetig00000115_pilon 21019..22313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1Ggra6924.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 21019..22313 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1.start1Ggra6924.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 21019..21021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1.CDS1Ggra6924.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 21019..21193 +
Ggra6924.t1.CDS2Ggra6924.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 21892..22086 +
Ggra6924.t1.CDS3Ggra6924.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000115_pilon 22129..22313 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1.exon1Ggra6924.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 21019..21193 +
Ggra6924.t1.exon2Ggra6924.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 21892..22086 +
Ggra6924.t1.exon3Ggra6924.t1.exon3Gracilaria gracilis GNS1m maleexontig00000115_pilon 22129..22313 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1.intron1Ggra6924.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 21194..21891 +
Ggra6924.t1.intron2Ggra6924.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000115_pilon 22087..22128 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1.stop1Ggra6924.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 22311..22313 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6924.t1 ID=Ggra6924.t1|Name=Ggra6924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MLVVNLELERPVYQRTDQSLVHTKDRLLRMLDVNNSRDMPLVAVRQATTI
IFNSIGAMVARALFRRHPGAKGDFEKQTGDYYEYTAAFEASEQDAVWDKE
DEAGNAAVHPFATTLATEDTADNVLGGHDFGGGEEEIEFDDGFGLAAGSQ
KGSKYYVAPKADLEQRLGGRRLGSLRESLLRRVY*
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spliced messenger RNA

>Ggra6924.t1 ID=Ggra6924.t1|Name=Ggra6924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000115_pilon:21019..22313+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGGTTAATTTGGAACTTGAGCGTCCTGTATATCAACGTACGGA
TCAGTCGTTAGTACACACCAAAGATCGTCTCTTGCGGATGCTCGATGTTA
ACAACAGCCGTGATATGCCTCTGGTTGCCGTTCGCCAGGCTACTACCATT
ATTTTTAATTCCATCGGTGCAATGGTAGCACGAGCCCTATTTAGAAGACA
TCCTGGTGCAAAAGGAGACTTTGAGAAACAAACTGGTGACTACTACGAGT
ACACAGCTGCGTTTGAAGCGTCTGAGCAAGATGCAGTTTGGGACAAAGAA
GATGAAGCAGGGAACGCTGCTGTTCATCCGTTCGCAACGACACTGGCCAC
CGAAGACACGGCAGATAATGTTCTAGGTGGCCATGACTTTGGTGGCGGCG
AAGAAGAGATTGAGTTTGATGACGGATTTGGACTTGCGGCAGGGAGCCAG
AAGGGCAGCAAGTACTACGTAGCTCCCAAGGCAGACCTGGAGCAGCGTCT
CGGCGGAAGAAGATTGGGAAGCTTGCGGGAGAGCTTGTTGCGGCGGGTGT
ATTGA
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protein sequence of Ggra6924.t1

>Ggra6924.t1 ID=Ggra6924.t1|Name=Ggra6924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MLVVNLELERPVYQRTDQSLVHTKDRLLRMLDVNNSRDMPLVAVRQATTI
IFNSIGAMVARALFRRHPGAKGDFEKQTGDYYEYTAAFEASEQDAVWDKE
DEAGNAAVHPFATTLATEDTADNVLGGHDFGGGEEEIEFDDGFGLAAGSQ
KGSKYYVAPKADLEQRLGGRRLGSLRESLLRRVY*
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mRNA from alignment at tig00000115_pilon:21019..22313+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6924.t1 ID=Ggra6924.t1|Name=Ggra6924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1295bp|location=Sequence derived from alignment at tig00000115_pilon:21019..22313+ (Gracilaria gracilis GNS1m male)
ATGCTGGTGGTTAATTTGGAACTTGAGCGTCCTGTATATCAACGTACGGA
TCAGTCGTTAGTACACACCAAAGATCGTCTCTTGCGGATGCTCGATGTTA
ACAACAGCCGTGATATGCCTCTGGTTGCCGTTCGCCAGGCTACTACCATT
ATTTTTAATTCCATCGGTGCAATGGGTATGGGAAGCTTTGAAAGAGGCAG
TTCTTTATTTGGATTCCCGGCCCCAAGCGGGCCCAAAAGCGCTCAACAAC
CGCCAGCACGTTGGATGTACTACAACGCAGCGGAGCACGCTGTGATTCTT
ATCCACGATGCCGATGGGGCACCTAGGAGTCCTACGCGAACCTGCCACTT
ATGGGACACACTGCACCAAAATAACACCAAACAAATTTCTTTTTGCTCTG
GCCATCGACTCTGGCGCGATTGAAACGGCTCTGGAGGTTGCTGAGGCGAT
CGGCGACAATGATACTTTCCGAGCCTGTCCTCTGCGGCTCTGAAATACAA
TAACTTGGAAGTGCTTGAGTGCTGTTTGCAAAGTACGAAGGATCTAGACA
GATTGGCGTTCTTGTATGTGCTGACTGGAAACTTTGAGAAGCTGCAACAA
AGTGGGAAAGATTGATGACGCACGCGGAAATCTTGTAGCTCGCTTCCAAA
TCAGTATGTATCTGGGTGATGTAGAGAGCACATCTCAGTTTTGAGAGTTT
GCAGTCAAGTAGCGATGGCTAAACTAGAACAGTTAAGAGCCATAGTATGA
CAGAAGAGCTGAGAGGTGGGAGGCTGGGGGGACTCGGAAGTCCCGATAGA
CCCGTCTTGGCAAGAAGGCGAACTAATTGTACCACCCACTCCTGTTGGCG
AAATGGTTTGGCCGCATTTGCAGTAGCACGAGCCCTATTTAGAAGACATC
CTGGTGCAAAAGGAGACTTTGAGAAACAAACTGGTGACTACTACGAGTAC
ACAGCTGCGTTTGAAGCGTCTGAGCAAGATGCAGTTTGGGACAAAGAAGA
TGAAGCAGGGAACGCTGCTGTTCATCCGTTCGCAACGACACTGGCCACCG
AAGACACGGCAGATAATGGTGAGGATGCGTGAATAATTGATTTTGATCTT
TATGAATCAGTTCTAGGTGGCCATGACTTTGGTGGCGGCGAAGAAGAGAT
TGAGTTTGATGACGGATTTGGACTTGCGGCAGGGAGCCAGAAGGGCAGCA
AGTACTACGTAGCTCCCAAGGCAGACCTGGAGCAGCGTCTCGGCGGAAGA
AGATTGGGAAGCTTGCGGGAGAGCTTGTTGCGGCGGGTGTATTGA
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Coding sequence (CDS) from alignment at tig00000115_pilon:21019..22313+

>Ggra6924.t1 ID=Ggra6924.t1|Name=Ggra6924.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000115_pilon:21019..22313+ (Gracilaria gracilis GNS1m male)
ATGCTGGTGGTTAATTTGGAACTTGAGCGTCCTGTATATCAACGTACGGA
TCAGTCGTTAGTACACACCAAAGATCGTCTCTTGCGGATGCTCGATGTTA
ACAACAGCCGTGATATGCCTCTGGTTGCCGTTCGCCAGGCTACTACCATT
ATTTTTAATTCCATCGGTGCAATGGTAGCACGAGCCCTATTTAGAAGACA
TCCTGGTGCAAAAGGAGACTTTGAGAAACAAACTGGTGACTACTACGAGT
ACACAGCTGCGTTTGAAGCGTCTGAGCAAGATGCAGTTTGGGACAAAGAA
GATGAAGCAGGGAACGCTGCTGTTCATCCGTTCGCAACGACACTGGCCAC
CGAAGACACGGCAGATAATGTTCTAGGTGGCCATGACTTTGGTGGCGGCG
AAGAAGAGATTGAGTTTGATGACGGATTTGGACTTGCGGCAGGGAGCCAG
AAGGGCAGCAAGTACTACGTAGCTCCCAAGGCAGACCTGGAGCAGCGTCT
CGGCGGAAGAAGATTGGGAAGCTTGCGGGAGAGCTTGTTGCGGCGGGTGT
ATTGA
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