Ggra6924.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6924.t1
Unique NameGgra6924.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Homology
BLAST of Ggra6924.t1 vs. uniprot
Match: A0A2V3J6E8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6E8_9FLOR)

HSP 1 Score: 112 bits (279), Expect = 9.070e-28
Identity = 66/121 (54.55%), Postives = 77/121 (63.64%), Query Frame = 0
Query:   59 VARALFRRHPGAKGDFEKQTGDYY----EYTAAFEASEQDAVWDKEDEAGNAAVHPFATTLATEDTA--------------DNVLGGHDFGGGEEEIEFDDGFGLAAGSQKGSKYYVAPKA 161
            +   L  R+ G++GDFE+  GDYY    E  AAFEASE+DAVWDKEDEA NAAVH FA  L TEDTA              D+ LGG +F GGEE+ EFDD FG A G +KG +YYVA  A
Sbjct:   62 ITPVLVSRYLGSEGDFEEPPGDYYGDYYEDAAAFEASERDAVWDKEDEATNAAVHWFAVGLGTEDTAANGDDAWEGDFDVEDSGLGGEEFVGGEEKNEFDDEFGRAGGGKKGREYYVAHTA 182          
BLAST of Ggra6924.t1 vs. uniprot
Match: A0A2V3ISQ5 (Coatomer subunit alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ5_9FLOR)

HSP 1 Score: 110 bits (274), Expect = 1.310e-24
Identity = 61/119 (51.26%), Postives = 72/119 (60.50%), Query Frame = 0
Query:   59 VARALFRRHPGAKGDFEKQTGDYYEYTAAFEASEQDAVWDKEDEAGNAAVHPFATTLATEDTA--------------DNVLGGHDFGGGEEEIEFDDGFGLAAGSQKGSKYYVAPKADL 163
            VAR LF R PGA+GDFE+ TGDYYE  AAFEASE++  WD E EA +A V PFA  L+TED A              D+ LGG +   G E  EF+DGFG     +KGS+YYV P   L
Sbjct:  849 VARGLFARDPGAEGDFEEPTGDYYEDAAAFEASERETAWDAEKEAASAPVDPFAVGLSTEDNAANGDDAWGGDFDIDDSGLGGDEVVAGAEANEFEDGFGSPGAGRKGSEYYVPPTVGL 967          
BLAST of Ggra6924.t1 vs. uniprot
Match: A0A2V3J4C0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4C0_9FLOR)

HSP 1 Score: 100 bits (248), Expect = 9.350e-24
Identity = 63/123 (51.22%), Postives = 74/123 (60.16%), Query Frame = 0
Query:   59 VARALFRRHPGAKGDFEKQTGDYY----EYTAAFEASEQDAVWDKEDEAGNAAVHPFATTLATEDTA--------------DNVLGGHDFGGGEEEIEFDDGFGLAAGSQKGSKYYVAPKADL 163
            VA  L  R PG +G+FE+ TGDYY    +  AAFEAS+QDAV  KEDEA NA V  FA  L TEDT+              D+ LGG +F GG E+ EFDD FG A G +KGS+YYV   A L
Sbjct:    8 VAPGLVSRDPGTEGEFEEPTGDYYGDYYKKAAAFEASQQDAVLYKEDEATNAVVGWFAVGLTTEDTSANSDDAWEGDVDLEDSSLGGEEFVGGVEKNEFDDEFGRAGGGKKGSEYYVEYTAGL 130          
BLAST of Ggra6924.t1 vs. uniprot
Match: R7QRU2 (Coatomer subunit alpha n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRU2_CHOCR)

HSP 1 Score: 92.4 bits (228), Expect = 1.890e-18
Identity = 59/121 (48.76%), Postives = 72/121 (59.50%), Query Frame = 0
Query:   59 VARALFRRHPGAKGDFEKQTGDYYEYTAAFEASEQDAVWDKEDEAGNAA-VHPFATTLATED----TADNVLGGH----------DFGGGEEEIEFDDGFGLAA-GSQKGSKYYVAPKADL 163
            VAR LF R PGA+GDFE+ TGDYYE  AAFEASE+DA WD +  A +AA V PFA  L  +D      D+  GG           D  G E+  EF DGFG +  G+ +G++YYV P A L
Sbjct:  850 VARGLFSRDPGAEGDFEEPTGDYYEDAAAFEASERDATWDDDRHATSAAPVDPFAVGLGGDDGGAAQGDDAWGGEFDIDDGEVEEDGFGTEDANEFQDGFGESGRGAARGNEYYVPPTAGL 970          
The following BLAST results are available for this feature:
BLAST of Ggra6924.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J6E89.070e-2854.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISQ51.310e-2451.26Coatomer subunit alpha n=1 Tax=Gracilariopsis chor... [more]
A0A2V3J4C09.350e-2451.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QRU21.890e-1848.76Coatomer subunit alpha n=1 Tax=Chondrus crispus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:21019..22313 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6924.t1Ggra6924.t1Gracilaria gracilis GNS1m malemRNAtig00000115_pilon 21019..22313 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6924.t1 ID=Ggra6924.t1|Name=Ggra6924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MLVVNLELERPVYQRTDQSLVHTKDRLLRMLDVNNSRDMPLVAVRQATTI
IFNSIGAMVARALFRRHPGAKGDFEKQTGDYYEYTAAFEASEQDAVWDKE
DEAGNAAVHPFATTLATEDTADNVLGGHDFGGGEEEIEFDDGFGLAAGSQ
KGSKYYVAPKADLEQRLGGRRLGSLRESLLRRVY*
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