Ggra6943.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6943.t1
Unique Name	Ggra6943.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	314

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000115_pilon	contig	tig00000115_pilon:188302..189243 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1168067.JAGP01000001_gene975
PFAMs	Methyltransf_25
Max annot lvl	72273\|Thiotrichales
Evalue	5.68e-36
EggNOG OGs	COG0220@1\|root,COG0607@1\|root,COG0220@2\|Bacteria,COG0607@2\|Bacteria,1QVWK@1224\|Proteobacteria,1S7J8@1236\|Gammaproteobacteria,460TB@72273\|Thiotrichales
Description	Tellurite resistance protein TehB
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6943	Ggra6943	Gracilaria gracilis GNS1m male	gene	tig00000115_pilon 188302..189243 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6943.t1.start1	Ggra6943.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000115_pilon 188302..188304 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6943.t1.CDS1	Ggra6943.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000115_pilon 188302..189243 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6943.t1.exon1	Ggra6943.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000115_pilon 188302..189243 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6943.t1.stop1	Ggra6943.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000115_pilon 189241..189243 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6943.t1	Ggra6943.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000115_pilon 188302..189243 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000115_pilon:188302..189243+
coding sequence from alignment at tig00000115_pilon:188302..189243+

mRNA sequence

>Ggra6943.t1 ID=Ggra6943.t1|Name=Ggra6943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MGLPSLHKPQVPVLDKSQWLSAYSDLPVHKKPPFIDIRDRSDFERQHVAH
ASNFPFSGDAGVDSRTNELPAVSGQPQLGIFGELEECSQVAEQLKRRGYP
NPILLSEEDISSLPRAQGKSRALWSPATIVVEELTRLRSHPIRTALDIGC
GSGRDAVFLAGAGFSVTAVDRDSKLTEKATKLWMRKQYHPLLSSTHLSGN
VRTITRTFGANLTEDRDFLRRHAAGLLVIVRFLRRGVLELLHEGVQAGGL
VIYEHFLTGCERFGSPAKPSQMLRRGELGLVFGPAQNFIILRDEECTLED
GRPVVRFVARKRV*

spliced messenger RNA

>Ggra6943.t1 ID=Ggra6943.t1|Name=Ggra6943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000115_pilon:188302..189243+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTGCCGAGTTTACACAAGCCTCAAGTTCCTGTGCTGGACAAGTC
TCAATGGTTATCTGCATATTCTGATCTCCCAGTTCACAAGAAACCCCCTT
TTATAGATATTCGCGATAGGAGTGACTTTGAGAGACAACATGTGGCCCAT
GCATCGAACTTTCCTTTTTCGGGTGATGCAGGAGTAGATTCTCGAACAAA
CGAGCTTCCGGCAGTTTCTGGTCAGCCTCAGCTCGGTATTTTCGGGGAGC
TGGAAGAATGCTCCCAAGTTGCAGAGCAACTGAAACGTAGAGGTTATCCT
AATCCGATTCTCCTGAGCGAAGAGGACATCAGCAGTCTTCCGCGTGCACA
AGGCAAAAGTCGGGCTCTTTGGTCTCCAGCCACGATTGTAGTCGAAGAGT
TAACTCGACTCCGTTCGCATCCCATACGAACAGCTCTCGATATTGGCTGC
GGCAGTGGACGAGACGCAGTATTTCTGGCGGGCGCGGGGTTTTCTGTAAC
TGCGGTTGATCGCGATTCCAAGTTAACAGAGAAAGCAACCAAACTGTGGA
TGAGAAAGCAATACCACCCGCTTTTGTCATCAACGCATTTAAGCGGAAAC
GTCAGAACGATAACACGAACGTTCGGGGCCAATCTTACCGAAGACCGCGA
CTTCCTACGAAGACATGCTGCTGGGCTGCTCGTTATCGTTCGTTTCTTGC
GGAGAGGAGTTTTGGAGCTTCTGCACGAAGGAGTGCAAGCTGGTGGACTG
GTAATCTACGAGCACTTTCTGACCGGGTGCGAACGCTTTGGATCTCCTGC
AAAACCTTCTCAGATGTTGCGTCGTGGAGAACTTGGACTAGTATTCGGTC
CTGCTCAAAACTTCATAATTCTACGCGATGAAGAGTGTACATTGGAGGAT
GGACGTCCTGTGGTTAGATTCGTTGCCCGTAAGCGTGTTTAG

protein sequence of Ggra6943.t1

>Ggra6943.t1 ID=Ggra6943.t1|Name=Ggra6943.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MGLPSLHKPQVPVLDKSQWLSAYSDLPVHKKPPFIDIRDRSDFERQHVAH
ASNFPFSGDAGVDSRTNELPAVSGQPQLGIFGELEECSQVAEQLKRRGYP
NPILLSEEDISSLPRAQGKSRALWSPATIVVEELTRLRSHPIRTALDIGC
GSGRDAVFLAGAGFSVTAVDRDSKLTEKATKLWMRKQYHPLLSSTHLSGN
VRTITRTFGANLTEDRDFLRRHAAGLLVIVRFLRRGVLELLHEGVQAGGL
VIYEHFLTGCERFGSPAKPSQMLRRGELGLVFGPAQNFIILRDEECTLED
GRPVVRFVARKRV*

mRNA from alignment at tig00000115_pilon:188302..189243+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6943.t1 ID=Ggra6943.t1|Name=Ggra6943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000115_pilon:188302..189243+ (Gracilaria gracilis GNS1m male)
ATGGGTTTGCCGAGTTTACACAAGCCTCAAGTTCCTGTGCTGGACAAGTC
TCAATGGTTATCTGCATATTCTGATCTCCCAGTTCACAAGAAACCCCCTT
TTATAGATATTCGCGATAGGAGTGACTTTGAGAGACAACATGTGGCCCAT
GCATCGAACTTTCCTTTTTCGGGTGATGCAGGAGTAGATTCTCGAACAAA
CGAGCTTCCGGCAGTTTCTGGTCAGCCTCAGCTCGGTATTTTCGGGGAGC
TGGAAGAATGCTCCCAAGTTGCAGAGCAACTGAAACGTAGAGGTTATCCT
AATCCGATTCTCCTGAGCGAAGAGGACATCAGCAGTCTTCCGCGTGCACA
AGGCAAAAGTCGGGCTCTTTGGTCTCCAGCCACGATTGTAGTCGAAGAGT
TAACTCGACTCCGTTCGCATCCCATACGAACAGCTCTCGATATTGGCTGC
GGCAGTGGACGAGACGCAGTATTTCTGGCGGGCGCGGGGTTTTCTGTAAC
TGCGGTTGATCGCGATTCCAAGTTAACAGAGAAAGCAACCAAACTGTGGA
TGAGAAAGCAATACCACCCGCTTTTGTCATCAACGCATTTAAGCGGAAAC
GTCAGAACGATAACACGAACGTTCGGGGCCAATCTTACCGAAGACCGCGA
CTTCCTACGAAGACATGCTGCTGGGCTGCTCGTTATCGTTCGTTTCTTGC
GGAGAGGAGTTTTGGAGCTTCTGCACGAAGGAGTGCAAGCTGGTGGACTG
GTAATCTACGAGCACTTTCTGACCGGGTGCGAACGCTTTGGATCTCCTGC
AAAACCTTCTCAGATGTTGCGTCGTGGAGAACTTGGACTAGTATTCGGTC
CTGCTCAAAACTTCATAATTCTACGCGATGAAGAGTGTACATTGGAGGAT
GGACGTCCTGTGGTTAGATTCGTTGCCCGTAAGCGTGTTTAG

Coding sequence (CDS) from alignment at tig00000115_pilon:188302..189243+

>Ggra6943.t1 ID=Ggra6943.t1|Name=Ggra6943.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000115_pilon:188302..189243+ (Gracilaria gracilis GNS1m male)
ATGGGTTTGCCGAGTTTACACAAGCCTCAAGTTCCTGTGCTGGACAAGTC
TCAATGGTTATCTGCATATTCTGATCTCCCAGTTCACAAGAAACCCCCTT
TTATAGATATTCGCGATAGGAGTGACTTTGAGAGACAACATGTGGCCCAT
GCATCGAACTTTCCTTTTTCGGGTGATGCAGGAGTAGATTCTCGAACAAA
CGAGCTTCCGGCAGTTTCTGGTCAGCCTCAGCTCGGTATTTTCGGGGAGC
TGGAAGAATGCTCCCAAGTTGCAGAGCAACTGAAACGTAGAGGTTATCCT
AATCCGATTCTCCTGAGCGAAGAGGACATCAGCAGTCTTCCGCGTGCACA
AGGCAAAAGTCGGGCTCTTTGGTCTCCAGCCACGATTGTAGTCGAAGAGT
TAACTCGACTCCGTTCGCATCCCATACGAACAGCTCTCGATATTGGCTGC
GGCAGTGGACGAGACGCAGTATTTCTGGCGGGCGCGGGGTTTTCTGTAAC
TGCGGTTGATCGCGATTCCAAGTTAACAGAGAAAGCAACCAAACTGTGGA
TGAGAAAGCAATACCACCCGCTTTTGTCATCAACGCATTTAAGCGGAAAC
GTCAGAACGATAACACGAACGTTCGGGGCCAATCTTACCGAAGACCGCGA
CTTCCTACGAAGACATGCTGCTGGGCTGCTCGTTATCGTTCGTTTCTTGC
GGAGAGGAGTTTTGGAGCTTCTGCACGAAGGAGTGCAAGCTGGTGGACTG
GTAATCTACGAGCACTTTCTGACCGGGTGCGAACGCTTTGGATCTCCTGC
AAAACCTTCTCAGATGTTGCGTCGTGGAGAACTTGGACTAGTATTCGGTC
CTGCTCAAAACTTCATAATTCTACGCGATGAAGAGTGTACATTGGAGGAT
GGACGTCCTGTGGTTAGATTCGTTGCCCGTAAGCGTGTTTAG