Ggra6938.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6938.t1
Unique NameGgra6938.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:181857..183540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707431.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue1.16e-78
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6938Ggra6938Gracilaria gracilis GNS1m malegenetig00000115_pilon 181857..183540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6938.t1Ggra6938.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 181857..183540 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6938.t1.start1Ggra6938.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 181857..181859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6938.t1.CDS1Ggra6938.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 181857..182001 +
Ggra6938.t1.CDS2Ggra6938.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 182144..183540 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6938.t1.exon1Ggra6938.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 181857..182001 +
Ggra6938.t1.exon2Ggra6938.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 182144..183540 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6938.t1.intron1Ggra6938.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 182002..182143 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6938.t1.stop1Ggra6938.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 183538..183540 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6938.t1 ID=Ggra6938.t1|Name=Ggra6938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=514bp
MASFTRSSASSSSSSSPPPSSSSPTPSPSSPPPPPPPPHVVAAPPPRCVA
ALATRLYRLDEPAAVVFDEFHFVRFLQQQQQRRFVFDIHPWLAKLTHLLV
ATLLRVPPLARFDMRIGAPYPTRHYVLPSRATSALFGALCVPLSFLTARA
LRLSLPAAALAALLPLCDNLLLMQSRYVLLDSQLIFYQLLTLLSALRLWR
LSRARAARARRRYYVALLATATAAAAALSVKWTAAVTPLLVAVVCAFGAG
RLLRRPLPAVDALLAAVVAAAVYVLPWLAYLRVSVFSSPAAARMSDAFRA
SLRANASLPLRAPRPPGVLRTLYELHWRQFRANQHVSTRHPWESRWYEWP
INARGLLFYINKAAHFSEQRPYLQTLYLMQNPAAALWVSAAVVSALCLLL
LLLRYRALISPTHRVFDAAPAATFLCAGYVLNLVPYMFVQRCYFIYHYLP
ALTYGQLLLALLVDLLPTRVRFVALFVIAATTVAAFVHWSPWIYATPTTL
ARYKQLQWMPRWT*
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spliced messenger RNA

>Ggra6938.t1 ID=Ggra6938.t1|Name=Ggra6938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00000115_pilon:181857..183540+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCTTCACGCGCTCGTCGGCGTCGTCCTCATCGTCCTCATCGCC
GCCGCCGTCGTCCTCATCGCCGACGCCGTCGCCCTCATcgccgccgccgc
cgccgccgccgccTCATGTCGTTGCTGcgccaccgccacgctgcgTGGCC
GCGCTGGCCACACGGCTGTACCGGCTGGACGAGCCGGCGGCCGTGGTGTT
TGACGAGTTCCACTTTGTGCGCTTCCTACAACAGCAGCAACAGCGTCGCT
TCGTGTTCGACATCCACCCGTGGCTGGCCAAGCTCACGCATCTACTGGTG
GCCACTTTGCTGCGCGTGCCGCCGCTTGCGCGCTTCGACATGCGCATCGG
CGCGCCGTACCCCACGCGCCACTACGTGCTGCCGTCGCGCGCAACCTCCg
cgctgttcggcgcgctgtgcgtgccgctcagcttcctcaccgcgcgcgcg
ctgcgtctgtcgctgcccgccgccgcgctcgccgcgctgctgccgctgtg
cgACAACCTGCTGCTCATGCAGAGCCGCTACGTGCTGCTCGACTCGCAGC
TCATCTTCTACCAGCTGCTCACGCTGCTCAGCGCGCTGCGTCTGTGGCGT
CTGTcgcgcgcgcgagctgctcgcgcgcgcCGTCGCTACTACGTCGCGCT
GCTGGCCACTGCCACCGCCGCCGCCGCCGCGCTCTCCGTCAAGTGGACCG
CCGCCGTCACGCCGCTGCTCGTGGCCGTGGTGTGCGCCTTTGGCGCAGGG
CGGCTGCTACGTCGCCCGCTGCCGGCCGTGGACGCGCTGCTGGCCGCCGT
GGTCGCCGCCGCCGTGTACGTGCTGCCGTGGCTGGCGTATCTGCGCGTGT
CCGTGTTCAGTTCGCCGGCTGCGGCGCGCATGTCCGACGCCTTTCGCGCC
TCGCTGCGCGCTAATGCGTCGCTGCCGTTGCGTGCGCCGCGCCCCCCCGG
CGTGCTGCGCACGCTGTACGAGCTACACTGGCGCCAGTTTCGCGCAAACC
AACACGTCAGCACGCGCCACCCGTGGGAGAGTCGCTGGTACGAGTGGCCG
ATCAACGCGCGCGGGCTGCTGTTCTACATCAACAAGGCGGCGCACTTTTC
GGAGCAGCGCCCGTATCTGCAGACGCTGTACCTCATGCAAAACCCCGCCG
CCGCGCTGTGGGTGTCGGCCGCCGTCGTCAGCGCTTTGTGTTTGCTGCTG
CTGTTGCTGCGGTACCGCGCGCTCATCTCGCCCACGCACCGCGTGTTTGA
CGCCGCGCCCGCCGCCACCTTTCTGTGCGCGGGCTATGTGCTCAACTTGG
TGCCGTACATGTTTGTGCAGCGTTGTTACTTTATATACCATTACTTGCCC
GCGTTGACGTACGGCCAGCTGCTGCTGGCGTTGCTGGTGGACCTGTTACC
CACGCGCGTTCGCTTCGTGGCGTTGTTCGTCATAGCGGCCACTACCGTGG
CTGCGTTTGTGCACTGGTCGCCGTGGATTTACGCCACGCCCACCACGCTT
GCGCGCTACAAGCAGCTGCAGTGGATGCCGCGATGGACTTAG
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protein sequence of Ggra6938.t1

>Ggra6938.t1 ID=Ggra6938.t1|Name=Ggra6938.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=514bp
MASFTRSSASSSSSSSPPPSSSSPTPSPSSPPPPPPPPHVVAAPPPRCVA
ALATRLYRLDEPAAVVFDEFHFVRFLQQQQQRRFVFDIHPWLAKLTHLLV
ATLLRVPPLARFDMRIGAPYPTRHYVLPSRATSALFGALCVPLSFLTARA
LRLSLPAAALAALLPLCDNLLLMQSRYVLLDSQLIFYQLLTLLSALRLWR
LSRARAARARRRYYVALLATATAAAAALSVKWTAAVTPLLVAVVCAFGAG
RLLRRPLPAVDALLAAVVAAAVYVLPWLAYLRVSVFSSPAAARMSDAFRA
SLRANASLPLRAPRPPGVLRTLYELHWRQFRANQHVSTRHPWESRWYEWP
INARGLLFYINKAAHFSEQRPYLQTLYLMQNPAAALWVSAAVVSALCLLL
LLLRYRALISPTHRVFDAAPAATFLCAGYVLNLVPYMFVQRCYFIYHYLP
ALTYGQLLLALLVDLLPTRVRFVALFVIAATTVAAFVHWSPWIYATPTTL
ARYKQLQWMPRWT*
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mRNA from alignment at tig00000115_pilon:181857..183540+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6938.t1 ID=Ggra6938.t1|Name=Ggra6938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1684bp|location=Sequence derived from alignment at tig00000115_pilon:181857..183540+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTCACGCGCTCGTCGGCGTCGTCCTCATCGTCCTCATCGCC
GCCGCCGTCGTCCTCATCGCCGACGCCGTCGCCCTCATcgccgccgccgc
cgccgccgccgccTCATGTCGTTGCTGcgccaccgccacgctgcggtgcg
tctgccgctcgccgcctccgcgcgcaaaccgccgctcccctccgcgcctg
ctgccctcaccgcgccgcgcttggcgccaccgccgccgccggcgGCCTCG
GCACGGCGTGAgcggctgctgctgctgctgctCACAGTGGCCGCGCTGGC
CACACGGCTGTACCGGCTGGACGAGCCGGCGGCCGTGGTGTTTGACGAGT
TCCACTTTGTGCGCTTCCTACAACAGCAGCAACAGCGTCGCTTCGTGTTC
GACATCCACCCGTGGCTGGCCAAGCTCACGCATCTACTGGTGGCCACTTT
GCTGCGCGTGCCGCCGCTTGCGCGCTTCGACATGCGCATCGGCGCGCCGT
ACCCCACGCGCCACTACGTGCTGCCGTCGCGCGCAACCTCCgcgctgttc
ggcgcgctgtgcgtgccgctcagcttcctcaccgcgcgcgcgctgcgtct
gtcgctgcccgccgccgcgctcgccgcgctgctgccgctgtgcgACAACC
TGCTGCTCATGCAGAGCCGCTACGTGCTGCTCGACTCGCAGCTCATCTTC
TACCAGCTGCTCACGCTGCTCAGCGCGCTGCGTCTGTGGCGTCTGTcgcg
cgcgcgagctgctcgcgcgcgcCGTCGCTACTACGTCGCGCTGCTGGCCA
CTGCCACCGCCGCCGCCGCCGCGCTCTCCGTCAAGTGGACCGCCGCCGTC
ACGCCGCTGCTCGTGGCCGTGGTGTGCGCCTTTGGCGCAGGGCGGCTGCT
ACGTCGCCCGCTGCCGGCCGTGGACGCGCTGCTGGCCGCCGTGGTCGCCG
CCGCCGTGTACGTGCTGCCGTGGCTGGCGTATCTGCGCGTGTCCGTGTTC
AGTTCGCCGGCTGCGGCGCGCATGTCCGACGCCTTTCGCGCCTCGCTGCG
CGCTAATGCGTCGCTGCCGTTGCGTGCGCCGCGCCCCCCCGGCGTGCTGC
GCACGCTGTACGAGCTACACTGGCGCCAGTTTCGCGCAAACCAACACGTC
AGCACGCGCCACCCGTGGGAGAGTCGCTGGTACGAGTGGCCGATCAACGC
GCGCGGGCTGCTGTTCTACATCAACAAGGCGGCGCACTTTTCGGAGCAGC
GCCCGTATCTGCAGACGCTGTACCTCATGCAAAACCCCGCCGCCGCGCTG
TGGGTGTCGGCCGCCGTCGTCAGCGCTTTGTGTTTGCTGCTGCTGTTGCT
GCGGTACCGCGCGCTCATCTCGCCCACGCACCGCGTGTTTGACGCCGCGC
CCGCCGCCACCTTTCTGTGCGCGGGCTATGTGCTCAACTTGGTGCCGTAC
ATGTTTGTGCAGCGTTGTTACTTTATATACCATTACTTGCCCGCGTTGAC
GTACGGCCAGCTGCTGCTGGCGTTGCTGGTGGACCTGTTACCCACGCGCG
TTCGCTTCGTGGCGTTGTTCGTCATAGCGGCCACTACCGTGGCTGCGTTT
GTGCACTGGTCGCCGTGGATTTACGCCACGCCCACCACGCTTGCGCGCTA
CAAGCAGCTGCAGTGGATGCCGCGATGGACTTAG
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Coding sequence (CDS) from alignment at tig00000115_pilon:181857..183540+

>Ggra6938.t1 ID=Ggra6938.t1|Name=Ggra6938.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1542bp|location=Sequence derived from alignment at tig00000115_pilon:181857..183540+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTCACGCGCTCGTCGGCGTCGTCCTCATCGTCCTCATCGCC
GCCGCCGTCGTCCTCATCGCCGACGCCGTCGCCCTCATcgccgccgccgc
cgccgccgccgccTCATGTCGTTGCTGcgccaccgccacgctgcgTGGCC
GCGCTGGCCACACGGCTGTACCGGCTGGACGAGCCGGCGGCCGTGGTGTT
TGACGAGTTCCACTTTGTGCGCTTCCTACAACAGCAGCAACAGCGTCGCT
TCGTGTTCGACATCCACCCGTGGCTGGCCAAGCTCACGCATCTACTGGTG
GCCACTTTGCTGCGCGTGCCGCCGCTTGCGCGCTTCGACATGCGCATCGG
CGCGCCGTACCCCACGCGCCACTACGTGCTGCCGTCGCGCGCAACCTCCg
cgctgttcggcgcgctgtgcgtgccgctcagcttcctcaccgcgcgcgcg
ctgcgtctgtcgctgcccgccgccgcgctcgccgcgctgctgccgctgtg
cgACAACCTGCTGCTCATGCAGAGCCGCTACGTGCTGCTCGACTCGCAGC
TCATCTTCTACCAGCTGCTCACGCTGCTCAGCGCGCTGCGTCTGTGGCGT
CTGTcgcgcgcgcgagctgctcgcgcgcgcCGTCGCTACTACGTCGCGCT
GCTGGCCACTGCCACCGCCGCCGCCGCCGCGCTCTCCGTCAAGTGGACCG
CCGCCGTCACGCCGCTGCTCGTGGCCGTGGTGTGCGCCTTTGGCGCAGGG
CGGCTGCTACGTCGCCCGCTGCCGGCCGTGGACGCGCTGCTGGCCGCCGT
GGTCGCCGCCGCCGTGTACGTGCTGCCGTGGCTGGCGTATCTGCGCGTGT
CCGTGTTCAGTTCGCCGGCTGCGGCGCGCATGTCCGACGCCTTTCGCGCC
TCGCTGCGCGCTAATGCGTCGCTGCCGTTGCGTGCGCCGCGCCCCCCCGG
CGTGCTGCGCACGCTGTACGAGCTACACTGGCGCCAGTTTCGCGCAAACC
AACACGTCAGCACGCGCCACCCGTGGGAGAGTCGCTGGTACGAGTGGCCG
ATCAACGCGCGCGGGCTGCTGTTCTACATCAACAAGGCGGCGCACTTTTC
GGAGCAGCGCCCGTATCTGCAGACGCTGTACCTCATGCAAAACCCCGCCG
CCGCGCTGTGGGTGTCGGCCGCCGTCGTCAGCGCTTTGTGTTTGCTGCTG
CTGTTGCTGCGGTACCGCGCGCTCATCTCGCCCACGCACCGCGTGTTTGA
CGCCGCGCCCGCCGCCACCTTTCTGTGCGCGGGCTATGTGCTCAACTTGG
TGCCGTACATGTTTGTGCAGCGTTGTTACTTTATATACCATTACTTGCCC
GCGTTGACGTACGGCCAGCTGCTGCTGGCGTTGCTGGTGGACCTGTTACC
CACGCGCGTTCGCTTCGTGGCGTTGTTCGTCATAGCGGCCACTACCGTGG
CTGCGTTTGTGCACTGGTCGCCGTGGATTTACGCCACGCCCACCACGCTT
GCGCGCTACAAGCAGCTGCAGTGGATGCCGCGATGGACTTAG
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