Ggra10123.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10123.t1
Unique NameGgra10123.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length91
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:245260..245532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10123Ggra10123Gracilaria gracilis GNS1m malegenetig00000113_pilon 245260..245532 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10123.t1.stop1Ggra10123.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 245260..245262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10123.t1.CDS1Ggra10123.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 245260..245532 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10123.t1.exon1Ggra10123.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 245260..245532 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10123.t1.start1Ggra10123.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 245530..245532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10123.t1Ggra10123.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 245260..245532 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10123.t1 ID=Ggra10123.t1|Name=Ggra10123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=91bp
MPFFVPEHDSPVLPRPITHAQPYKSEMIRGDMKLEDMMKSRGDLDAKRKL
GMSKISELEKLRYALVRQPRIQLAGREQMVHMLRMELWEP*
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spliced messenger RNA

>Ggra10123.t1 ID=Ggra10123.t1|Name=Ggra10123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp|location=Sequence derived from alignment at tig00000113_pilon:245260..245532- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTCTTCGTTCCTGAGCACGACAGCCCCGTTCTTCCTCGCCCTAT
CACTCATGCGCAACCGTACAAGAGTGAAATGATTCGCGGAGATATGAAAC
TGGAAGACATGATGAAATCGCGAGGTGACTTGGACGCAAAGCGCAAGCTT
GGTATGTCAAAAATATCAGAGCTTGAAAAGCTTCGCTACGCGCTGGTAAG
GCAGCCTCGGATACAGCTCGCGGGCAGGGAGCAAATGGTGCACATGCTCA
GAATGGAACTATGGGAGCCATGA
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protein sequence of Ggra10123.t1

>Ggra10123.t1 ID=Ggra10123.t1|Name=Ggra10123.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=91bp
MPFFVPEHDSPVLPRPITHAQPYKSEMIRGDMKLEDMMKSRGDLDAKRKL
GMSKISELEKLRYALVRQPRIQLAGREQMVHMLRMELWEP*
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mRNA from alignment at tig00000113_pilon:245260..245532-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10123.t1 ID=Ggra10123.t1|Name=Ggra10123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp|location=Sequence derived from alignment at tig00000113_pilon:245260..245532- (Gracilaria gracilis GNS1m male)
ATGCCGTTCTTCGTTCCTGAGCACGACAGCCCCGTTCTTCCTCGCCCTAT
CACTCATGCGCAACCGTACAAGAGTGAAATGATTCGCGGAGATATGAAAC
TGGAAGACATGATGAAATCGCGAGGTGACTTGGACGCAAAGCGCAAGCTT
GGTATGTCAAAAATATCAGAGCTTGAAAAGCTTCGCTACGCGCTGGTAAG
GCAGCCTCGGATACAGCTCGCGGGCAGGGAGCAAATGGTGCACATGCTCA
GAATGGAACTATGGGAGCCATGA
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Coding sequence (CDS) from alignment at tig00000113_pilon:245260..245532-

>Ggra10123.t1 ID=Ggra10123.t1|Name=Ggra10123.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=273bp|location=Sequence derived from alignment at tig00000113_pilon:245260..245532- (Gracilaria gracilis GNS1m male)
ATGCCGTTCTTCGTTCCTGAGCACGACAGCCCCGTTCTTCCTCGCCCTAT
CACTCATGCGCAACCGTACAAGAGTGAAATGATTCGCGGAGATATGAAAC
TGGAAGACATGATGAAATCGCGAGGTGACTTGGACGCAAAGCGCAAGCTT
GGTATGTCAAAAATATCAGAGCTTGAAAAGCTTCGCTACGCGCTGGTAAG
GCAGCCTCGGATACAGCTCGCGGGCAGGGAGCAAATGGTGCACATGCTCA
GAATGGAACTATGGGAGCCATGA
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