Ggra10111.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10111.t1
Unique Name	Ggra10111.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10111	Ggra10111	Gracilaria gracilis GNS1m male	gene	tig00000113_pilon 152289..154306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10111.t1	Ggra10111.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000113_pilon 152289..154306 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10111.t1.start1	Ggra10111.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000113_pilon 152289..152291 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10111.t1.CDS1	Ggra10111.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000113_pilon 152289..152469 +
Ggra10111.t1.CDS2	Ggra10111.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000113_pilon 153910..153970 +
Ggra10111.t1.CDS3	Ggra10111.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000113_pilon 154078..154306 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10111.t1.exon1	Ggra10111.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000113_pilon 152289..152469 +
Ggra10111.t1.exon2	Ggra10111.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000113_pilon 153910..153970 +
Ggra10111.t1.exon3	Ggra10111.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000113_pilon 154078..154306 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10111.t1.intron1	Ggra10111.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000113_pilon 152470..153909 +
Ggra10111.t1.intron2	Ggra10111.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000113_pilon 153971..154077 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10111.t1.stop1	Ggra10111.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000113_pilon 154304..154306 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000113_pilon:152289..154306+
coding sequence from alignment at tig00000113_pilon:152289..154306+

mRNA sequence

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MDARRISNCESWHSRGEARRITAPERPLTVTEPISGPLIVRVPDAPALTT
CIHMTSPFFPVHVSSKLGISRNQKQLQTTTRFFAMCEWDLDKDSRGGLVR
IKVKDCGSSSCPSSDNYRRSRGQNDTILPAQKAESIAVSRSLPPCNVPSS
LSLHQM*

spliced messenger RNA

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000113_pilon:152289..154306+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAAGACGCATTTCAAATTGCGAGTCATGGCATTCTAGAGGTGA
AGCACGGCGCATTACGGCACCTGAACGACCTCTGACTGTTACTGAGCCGA
TAAGTGGACCGCTTATAGTGCGCGTGCCTGATGCTCCGGCGCTCACTACC
TGCATCCACATGACATCTCCCTTCTTCCCAGTGCATGTCAGTTCTAAGCT
TGGAATTTCAAGAAATCAGAAGCAGCTGCAAACAACGACGAGGTTTTTCG
CAATGTGTGAGTGGGATCTCGACAAGGATAGTAGAGGTGGATTAGTCCGT
ATCAAAGTTAAAGATTGTGGGAGCAGTTCATGCCCTAGTTCTGATAACTA
CCGTCGAAGCCGGGGCCAGAATGACACCATTCTGCCCGCACAAAAGGCAG
AATCGATCGCAGTTAGTCGTTCTTTGCCTCCGTGCAATGTTCCAAGCAGT
CTGAGCCTTCATCAGATGTAG

protein sequence of Ggra10111.t1

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MDARRISNCESWHSRGEARRITAPERPLTVTEPISGPLIVRVPDAPALTT
CIHMTSPFFPVHVSSKLGISRNQKQLQTTTRFFAMCEWDLDKDSRGGLVR
IKVKDCGSSSCPSSDNYRRSRGQNDTILPAQKAESIAVSRSLPPCNVPSS
LSLHQM*

mRNA from alignment at tig00000113_pilon:152289..154306+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2018bp|location=Sequence derived from alignment at tig00000113_pilon:152289..154306+ (Gracilaria gracilis GNS1m male)
ATGGACGCAAGACGCATTTCAAATTGCGAGTCATGGCATTCTAGAGGTGA
AGCACGGCGCATTACGGCACCTGAACGACCTCTGACTGTTACTGAGCCGA
TAAGTGGACCGCTTATAGTGCGCGTGCCTGATGCTCCGGCGCTCACTACC
TGCATCCACATGACATCTCCCTTCTTCCCAGGTAACTCGAATACAACTTG
AAGCGGCGTTGCGTTTAAGAGAACCACAACTTCAGACCAGCGTAGTGATT
CCTCCTCAAGATCTTCTTCTGTCAGACCACCTTCTGTATGTATTTCCTTG
AGTTGCTTTAGCCGCAATCTTCGTAGAAAACTAGCTTTTCGTGAATATCT
TCCGCAGTTTCCATGCAGAAGATTTCAGGATGTGACCTGCGCAAGAGGAC
GAGTCCTCTAATACTGAACAGTGGACCATTCTTTCAGTTTTGTACTCCAA
CGAATCATGTTGATCTCATCTGAAGATTCGTATGAATTCTCATCGTCAAA
CTTTGTTCTGCACATTTCCTGTCCCGTCTGGATGAAAGGAATACCTTGGG
AAGTGAGGACTACAACCGCTGCTAACTTGTGCATTCGTCGTACGTCTTCT
TCGCTGAATTTGATTGTATCTGTCCTGGATCGAATGTAGTGATTTAAGTG
GTCCCATAGAGTACGATTGTCATGGCACTCGACGTAGTTGATGCTTTCCA
GTGGCGAATCGGCGAACATATCCACAGAGCCTATAATCCCACCTGACTGA
CTTCCGTAAGCCTACCACCGTCCATGATGAATGTCTCTTCGGTATCAAAG
GGAGAACCTCTAATCGCGTTGCGAAAGGTGTCGTTAAAGACTGCAAAACC
TTTGGAACGCTGTGAACCCTTGTCAGTTGCCTTTATTGGAGAGAGGCCAC
CGATCCAtgttagccgcgtctgacgcgtgcactgggggtgagcgaattgc
caaactccgcaatgcagtttggcaacatgtgagtcgaaagaaagccgtgc
gtcacgaagactcgacATTCTGCTTCCATTATCGAGCGTCGGTGTGGCGT
AAACATCACATTGACAAAGAAAGATTCGTGAGCGGCGAGCTCAGCACACA
CGTTGCGCTAGAGCACGCGTAGCGGGTAACTTTATATAGATCCTACATAC
ATACTGCGCTCTCTGAAACGCAACGATTCGCACTGTCACGCTCTACTTCT
TTTGGACGACGAGAAACTCTTTCTCTATGTTGTGACGCACGATGCTCTTC
TTGCTGCTATGAAGTTCCTTTCGGTTATACGAGTGATCTTCCAGATCACG
CTTGCCGGGCGATCCGCCTTCAACACAATTATATCAAGCGTGCCTGCAGT
GCTGCTTGTAGTGTTACCTGTATCTACACTACATAACCGAAATGCACCGC
TTCCAGTTTCGCCCAGGCCCTCCATGGACCAGATATGAGATATATTTACG
ACAACTCGTAGCCTTTCACTACCCGTAACCGAGCGAGATTAAGTTCAAAT
TTGTTTTGTCGACTTAAAACCAAACAGCGTCGAGGGTCTCATCTTCTCTT
GACGCGAAATACTTACAACCTAGTTGTGTATAACCGTCTGAAACATCTGT
GAGTCCACTACACGGACTTAGTGCATGTCAGTTCTAAGCTTGGAATTTCA
AGAAATCAGAAGCAGCTGCAAACAACGACGAGGTATGTTTTCAAACCTTT
TGAGCGCTCCCGAACCACTATTGCTACCTCTCTTTATCGTAGTACGTACC
TTCGTTACTGACGATTTAATCAAAATTACTTGAGAACAGGTTTTTCGCAA
TGTGTGAGTGGGATCTCGACAAGGATAGTAGAGGTGGATTAGTCCGTATC
AAAGTTAAAGATTGTGGGAGCAGTTCATGCCCTAGTTCTGATAACTACCG
TCGAAGCCGGGGCCAGAATGACACCATTCTGCCCGCACAAAAGGCAGAAT
CGATCGCAGTTAGTCGTTCTTTGCCTCCGTGCAATGTTCCAAGCAGTCTG
AGCCTTCATCAGATGTAG

Coding sequence (CDS) from alignment at tig00000113_pilon:152289..154306+

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000113_pilon:152289..154306+ (Gracilaria gracilis GNS1m male)
ATGGACGCAAGACGCATTTCAAATTGCGAGTCATGGCATTCTAGAGGTGA
AGCACGGCGCATTACGGCACCTGAACGACCTCTGACTGTTACTGAGCCGA
TAAGTGGACCGCTTATAGTGCGCGTGCCTGATGCTCCGGCGCTCACTACC
TGCATCCACATGACATCTCCCTTCTTCCCAGTGCATGTCAGTTCTAAGCT
TGGAATTTCAAGAAATCAGAAGCAGCTGCAAACAACGACGAGGTTTTTCG
CAATGTGTGAGTGGGATCTCGACAAGGATAGTAGAGGTGGATTAGTCCGT
ATCAAAGTTAAAGATTGTGGGAGCAGTTCATGCCCTAGTTCTGATAACTA
CCGTCGAAGCCGGGGCCAGAATGACACCATTCTGCCCGCACAAAAGGCAG
AATCGATCGCAGTTAGTCGTTCTTTGCCTCCGTGCAATGTTCCAAGCAGT
CTGAGCCTTCATCAGATGTAG