Ggra10104.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10104.t1
Unique NameGgra10104.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Homology
BLAST of Ggra10104.t1 vs. uniprot
Match: S0F3L4 (Uncharacterized protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=S0F3L4_CHOCR)

HSP 1 Score: 185 bits (469), Expect = 1.120e-53
Identity = 104/260 (40.00%), Postives = 155/260 (59.62%), Query Frame = 0
Query:    1 MVDTATGLVTTVVPPAFDRAAVGMAQRNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACDAPMRALINDVAVDDRFAYFTDTLLGNVYALPVNS-GKCDFDTIPLPRDSFPEGSGAFSANGIVRFASGLVVANIGVGSLFFVD-LDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVALRV 258
            +VD A+GLVTT V P   R   G+      L+VAG G   +  V P + VYD+ +G  +  C     +L+NDV  D  FA++TD+  G VY L +++  +C F+TIPLP  +F   +G F ANGIV++  GL+VAN  + + FF+D L+ N  QR+LP+G   G DGL++      +  + LY+ Q+  N +SVW+LS+   RRV  +FV+N+TSS F+ P+T+A+   TL+VAN  F   P T  + DD    + A+ +
Sbjct:   54 LVDVASGLVTTAVAPIPGRIGGGIDASKDRLFVAGGGSF-LPGVEPALHVYDIPTGTPIATCPTGGGSLVNDVIADKDFAFYTDSFRGVVYKLSISALPRCRFETIPLPTPAFKPEAGVFRANGIVKYKGGLIVANSELAAPFFIDILNGNKAQRILPNGTTEGIDGLDIV---RMKGGSLLYVTQNSLNRVSVWKLSI-RGRRVSAKFVKNITSSGFNVPTTVAVKKNTLVVANAAFGSVPPTGPIDDDVRLNITAIHI 308          
BLAST of Ggra10104.t1 vs. uniprot
Match: R7QCK1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCK1_CHOCR)

HSP 1 Score: 167 bits (422), Expect = 1.070e-46
Identity = 97/262 (37.02%), Postives = 152/262 (58.02%), Query Frame = 0
Query:    1 MVDTATGLVTTVVPPAFDRAAVGMAQRNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACDAPMR---ALINDVAVDDRFAYFTDTLLGNVYALPVNS-GKCDFDTIPLPRDSFPEGSGAFSANGIVRFASGLVVANIGVGSLFFVDL-DTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVALR 257
            + D +T LVT  V    +R +VG+  R G ++ AG G    F     ++VYD  +G  + AC  P+R   AL+NDV  D  +AY+TD+LLG +Y L +    +CD DTI LP+  F   S   SANG+V++  G+++ ++ +G++FFVDL + N  Q++LP G++ GADGL++      +  + L++AQ+  NLIS WRL +G+DR+V   F+R  +S  F  P+T+A+    ++    RF        +PD+    LV  R
Sbjct:   51 LADVSTRLVTRAVRAPPNRTSVGIHSRKGRIFAAGGG--APFFPVANLYVYDTATGNEIAAC--PVRDENALVNDVIADRDYAYYTDSLLGRIYKLSLAKLPECDIDTIHLPQPLFK--SDLASANGLVKYKGGIILVHLDLGTIFFVDLLNRNRVQQILPPGSMLGADGLDID---RKKGGSLLFVAQNRENLISQWRLGMGDDRKVSAVFLRKYSSPQFGFPTTVAVTGDYIVAPTSRFDTVEFAEPIPDNVTLGLVVFR 303          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A7J9WPJ5 (Superoxide dismutase n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WPJ5_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-19
Identity = 87/260 (33.46%), Postives = 125/260 (48.08%), Query Frame = 0
Query:    3 DTATGLVTTVVPPAFDRAAVGMAQRNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACD--APMRALINDVAVDDRFAYFTDTLLGNVYALPVNSGKCDFDTIPLPRDS-FPEGSGAFSANGIVRFASG--LVVANIGVGSLFFVDLDTNATQRL-LPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVAL 256
            D  TG    +VP    RAA+G+ +  G LYVAG G  G      + F+YD  +G  +      A     +NDV V    A+FTD+++  +Y L  +SG+    TIPL  D  F EG   F+ANGI    +G  LV+     G +F  D +T  T+ + L    VP  DG+ L          TLY+ Q+  N+++V  +S+  D   G + V  V  + FD P+T+A    TL   N RF   P+     DD  + +V L
Sbjct:   77 DLRTGDGDVLVPGREGRAAIGLKEAGGLLYVAG-GPTG------QAFIYDAETGADVATHQLAASTPTFVNDVVVTRTHAFFTDSMIQVLYRLDRSSGEVT--TIPLEGDIVFEEG---FNANGIDATPNGKTLVLVQSNTGQVFSADPETGFTREIDLGGETVPNGDGILLH-------GRTLYVVQNRMNVVAV--ISLAPDFSSG-EVVERVGHAEFDVPTTIARFGNTLYAVNARFETPPM-----DDTRYWIVGL 309          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A0Q9LL58 (Uncharacterized protein n=1 Tax=Phycicoccus sp. Soil748 TaxID=1736397 RepID=A0A0Q9LL58_9MICO)

HSP 1 Score: 88.6 bits (218), Expect = 6.640e-17
Identity = 91/261 (34.87%), Postives = 133/261 (50.96%), Query Frame = 0
Query:    3 DTATGLVTTVVPPAFDRAAVGMAQ--RNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACD-APMRALINDVAVDDRFAYFTDTLLGNVYALPVNSGKCD-FDTIPLPRDSFPEGSGAFSANGIVRFASG--LVVANIGVGSLFFVDLDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRF-MDFPLTVEVPDDALFELVAL 256
            D   G  T  V     R A GM    R+  L+VAG G  G      + +VY   +G  + +   A     INDVA+ D  A+FTD+    +Y +PV  G    F T+ L   +  + SGAF++NGI   A G  L+VA+ G G++  V+  T A+ R +   +VP  DG+ L          TL++ ++  NL+   +LS G   R G   +R +TSSLF+TP+T+AL  G +LVAN +F   FP     P    +E+VA+
Sbjct:   71 DARHGTATKFVHAPAGRFATGMKADLRHHLLFVAG-GPTG------QGYVYSTLTGAPVASYTFAVAPTFINDVALTDAGAWFTDSSRAVLYFVPVRGGSPRAFSTLHLSGPA-ADLSGAFNSNGIQATADGSRLLVAHSGQGAVNVVNPRTGAS-RAIAGLSVPNVDGILLD-------GRTLWVVRNNDNLVVKAQLSDG--LRSGT-VLRTITSSLFETPTTVALVAGKVLVANAKFDTGFP-----PTATSYEVVAI 307          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A100JCQ1 (Uncharacterized protein n=9 Tax=Streptomyces TaxID=1883 RepID=A0A100JCQ1_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 8.200e-17
Identity = 75/222 (33.78%), Postives = 101/222 (45.50%), Query Frame = 0
Query:   28 NGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRA--CDAPMRALINDVAVDDRFAYFTDTLLGNVYALPVNSGKC-----DFDTIPLPRDSFPEGSGAFSANGIVRFASG--LVVANIGVGSLFFVDLDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFP 240
             G L++AG G            V D RSGE L +           NDV +  R A+FTD+    +YALP+          D   +PL  D        F+ANGI R   G  L+V   GVG+L  VD  T  T+ +   GA P  +G  L  D        LY+ Q+  N + V+RL+   D R G+ F+R +T + FD P+T A   G L + N RF   P
Sbjct:  108 RGRLFIAGRG--------EGARVVDARSGEILASYRLTTATPTFANDVFLTPRAAWFTDSFQPTLYALPLGRDGALPAADDVVHLPLTGDWAQVPGEVFNANGITRTPDGSALLVVQSGVGALHRVDPRTGVTKLVDLGGAAPLTNGDGLLRDGR-----LLYVVQNQQNAVDVFRLAA--DGRSGV-FLRRITDTDFDVPTTAAAYKGRLYLPNARFSTTP 313          
BLAST of Ggra10104.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Arthrobacter sp. ISL-28 TaxID=2819108 RepID=UPI001BECD7FD (hypothetical protein n=1 Tax=Arthrobacter sp. ISL-28 TaxID=2819108 RepID=UPI001BECD7FD)

HSP 1 Score: 84.3 bits (207), Expect = 2.450e-15
Identity = 83/246 (33.74%), Postives = 123/246 (50.00%), Query Frame = 0
Query:   19 RAAVGMA--QRNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACDAPMRA-LINDVAVDDRFAYFTDTLLGNVYALPV-NSGKCDF-DTIPLPRDSFPEGSGAFSANGIV--RFASGLVVANIGVGSLFFVDLDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVALR 257
            R AVGM     N  L+VAG G  G      + +VYD    +T++      +A  INDVA+ DR A+FT++L G +Y +PV + GK     T+ L   +   G   F+ NGI   R    LVVA+ G  +L+ V+  T A+ ++     +P  DG+ ++ D       T++  Q+  N IS  RL V    R G +    + S  F+ P+T AL DGTL   N +FM       VP+   FE+V ++
Sbjct:   94 RVAVGMKADNENDLLFVAG-GASG------KAYVYDTEDRKTVKTIQLTRKAAFINDVALTDRGAWFTNSLQGELYFVPVGDEGKLGMVRTLKLTGPAADAGD-QFNLNGIASARNHRTLVVAHSGNQALYTVNPRTGASAQI-KGVTLPNVDGIVVKGD-------TIWAVQNFSNQIS--RLRVDFPDRSG-EVKEVIKSRHFNIPTTAALFDGTLAAVNAKFM-------VPNAKTFEVVLVK 313          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A1P8M270 (Uncharacterized protein n=5 Tax=Arthrobacter TaxID=1663 RepID=A0A1P8M270_9MICC)

HSP 1 Score: 81.3 bits (199), Expect = 3.250e-14
Identity = 84/248 (33.87%), Postives = 124/248 (50.00%), Query Frame = 0
Query:   19 RAAVGM-AQRNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACDAPMR-ALINDVAVDDRFAYFTDTLLGNVYALPVNSGKCDFD-----TIPLPRDSFPEGSGAFSANGIV--RFASGLVVANIGVGSLFFVDLDT-NATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVAL 256
            R AVGM A R+  L     G  G      + +VYD  +G+T+R        A INDVA+ DR A+FT++  G +Y +PV+    D D     T+PL +    + S  F+ NGI   R A  LVVA+ G  +L+ V   T N+T+  +    V  ADG+ ++ D       T++  Q+  N IS  R++  ++    L+ V  +TS  F+ P+T AL D TL   N +F        VPD   FE+V +
Sbjct:   94 RMAVGMKADRHNDLLFVAGGPTG------QAYVYDTDTGKTVRTYQLTKNEAFINDVALTDRGAWFTNSRQGELYFIPVDD---DGDLGSVRTLPL-KGPAADTSKQFNLNGIAYSRDARRLVVAHSGNQTLYTVSPRTGNSTE--ITGVKVANADGVLVKGD-------TVWAVQNFSNQISRLRVNF-HESTAKLREV--ITSPNFNIPTTAALFDDTLAAVNAKF-------GVPDATTFEVVTV 312          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A2J8GD56 (Uncharacterized protein n=1 Tax=Arthrobacter sp. AFG20 TaxID=1688671 RepID=A0A2J8GD56_9MICC)

HSP 1 Score: 80.5 bits (197), Expect = 6.230e-14
Identity = 82/245 (33.47%), Postives = 121/245 (49.39%), Query Frame = 0
Query:   19 RAAVGMAQ--RNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACDAPMR-ALINDVAVDDRFAYFTDTLLGNVYALPVNSGKCDFDTIPLPRDSFP--EGSGAFSANGIV--RFASGLVVANIGVGSLFFVDLDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVAL 256
            R AVGM    RN  L+VAG G  G        +VYD   G+T++      + A INDVA+ D  A+FT++  G +Y +PV+    D  T+       P  + S  F+ NGI   R A  LVVA+ G  +L+ V   T A+  +     VP  DG+ ++ D       T++  Q+M N IS  R++  ++    L+ V  +TS  F+ P+T AL D TL   N +F        VP+   FE+V +
Sbjct:   96 RMAVGMKADTRNDLLFVAG-GPAGT------AYVYDTDDGKTVKTYQLTTKEAFINDVALTDHGAWFTNSRRGELYFIPVDDDG-DLGTVRTLALKGPAADTSKQFNLNGIAYSRDARRLVVAHSGNQALYTVSPRTGASAEI-KGVKVPNVDGVLVKGD-------TVWAVQNMSNQISRLRVNF-HESTAKLREV--ITSPHFNIPTTAALFDDTLAAVNAKF-------GVPNAKTFEVVTV 314          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A328HIU1 (Uncharacterized protein n=2 Tax=Arthrobacter TaxID=1663 RepID=A0A328HIU1_ARTGO)

HSP 1 Score: 77.4 bits (189), Expect = 8.450e-13
Identity = 76/244 (31.15%), Postives = 121/244 (49.59%), Query Frame = 0
Query:   19 RAAVGM-AQRNGSLYVAGAGFVGVFRVPPRMFVYDVRSGETLRACDAPMR-ALINDVAVDDRFAYFTDTLLGNVYALPVNSGKC--DFDTIPLPRDSFPEGSGAFSANGIV--RFASGLVVANIGVGSLFFVDLDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELVAL 256
            R AVGM A R+  L     G  G      + +VYD  +G+T++      + A INDVA+ D  A+FT++  G +Y +PV+      +  T+ L +    + S  F+ NGI   R A  LVVA+ G  +L+ V   + A+  +     VP  DG+ ++ D       T++  Q+M N IS  R++  ++    L+ V  +TS  F+ P+T AL D TL   N +F        +P+   FE+V +
Sbjct:  104 RVAVGMKADRHNDLLFVAGGPTG------QAYVYDTDTGKTVKTYQLTKKEAFINDVALTDHGAWFTNSRRGELYFIPVDDDGDLGNVRTLAL-KGPAADTSKQFNLNGIAYSRDAGRLVVAHTGNQALYTVSPRSGASTAI-KGVKVPNVDGILVKGD-------TVWAVQNMSNQISRLRVNF-HESTAKLREV--ITSRHFNIPTTAALFDDTLAAVNAKF-------GMPNAKTFEVVTV 322          
BLAST of Ggra10104.t1 vs. uniprot
Match: A0A4P8GYX4 (Uncharacterized protein n=1 Tax=Arthrobacter sp. 24S4-2 TaxID=2575374 RepID=A0A4P8GYX4_9MICC)

HSP 1 Score: 76.6 bits (187), Expect = 1.410e-12
Identity = 80/247 (32.39%), Postives = 119/247 (48.18%), Query Frame = 0
Query:   19 RAAVGMAQ--RNGSLYVAGAGFVGVFRVPPRMFVYDVRSGET-----LRACDAPMRALINDVAVDDRFAYFTDTLLGNVYALPVNS-GKC-DFDTIPLPRDSFPEGSGAFSANGIVRFASG--LVVANIGVGSLFFVDLDTNATQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGNDRRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDALFELV 254
            R AVGM     N  L+VAG G  G      + +VYD  + +T     L        A INDVAV D  A+FT++L G +Y +PV+  GK  D  T+ L   +    SG F+ NGI     G  L+VA+    +L+ VD ++ A+  +   G +P  DG+ +  +       TL+  Q+M N +S  RL   + R    +    +TS+ F  P+T AL   TL + N +F        VP  + +E+V
Sbjct:   95 RMAVGMKVDVENSLLFVAG-GATG------QAYVYDTDTRKTVATYQLTEVSEQQPAFINDVAVTDDGAWFTNSLKGELYFVPVDRHGKPGDLKTLTLTGPAAAT-SGDFNLNGIAAVRGGRTLIVAHTANEALYTVDPESGASAEITGAG-LPYVDGIVVNGN-------TLWAVQNMLNQVSRVRL---DSRLESFEVKGVITSTDFQVPTTAALFGDTLALVNAKF-------GVPGASKYEVV 315          
The following BLAST results are available for this feature:
BLAST of Ggra10104.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S0F3L41.120e-5340.00Uncharacterized protein n=2 Tax=Chondrus crispus T... [more]
R7QCK11.070e-4637.02Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7J9WPJ51.060e-1933.46Superoxide dismutase n=1 Tax=Nitriliruptorales bac... [more]
A0A0Q9LL586.640e-1734.87Uncharacterized protein n=1 Tax=Phycicoccus sp. So... [more]
A0A100JCQ18.200e-1733.78Uncharacterized protein n=9 Tax=Streptomyces TaxID... [more]
hypothetical protein n=1 Tax=Arthrobacter sp. ISL-28 TaxID=2819108 RepID=UPI001BECD7FD2.450e-1533.74hypothetical protein n=1 Tax=Arthrobacter sp. ISL-... [more]
A0A1P8M2703.250e-1433.87Uncharacterized protein n=5 Tax=Arthrobacter TaxID... [more]
A0A2J8GD566.230e-1433.47Uncharacterized protein n=1 Tax=Arthrobacter sp. A... [more]
A0A328HIU18.450e-1331.15Uncharacterized protein n=2 Tax=Arthrobacter TaxID... [more]
A0A4P8GYX41.410e-1232.39Uncharacterized protein n=1 Tax=Arthrobacter sp. 2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..234
e-value: 1.5E-5
score: 26.4
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 2..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:95785..96582 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10104.t1Ggra10104.t1Gracilaria gracilis GNS1m malemRNAtig00000113_pilon 95785..96582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10104.t1 ID=Ggra10104.t1|Name=Ggra10104.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MVDTATGLVTTVVPPAFDRAAVGMAQRNGSLYVAGAGFVGVFRVPPRMFV
YDVRSGETLRACDAPMRALINDVAVDDRFAYFTDTLLGNVYALPVNSGKC
DFDTIPLPRDSFPEGSGAFSANGIVRFASGLVVANIGVGSLFFVDLDTNA
TQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGND
RRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDAL
FELVALRVGAPTCSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf