Ggra10104.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10104.t1
Unique NameGgra10104.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:95785..96582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000003_gene3009
PFAMsBig_3_5,SGL,VCBS
Max annot lvl2|Bacteria
Evalue1.21e-16
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria
Descriptionamine dehydrogenase activity
COG categoryCO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10104Ggra10104Gracilaria gracilis GNS1m malegenetig00000113_pilon 95785..96582 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10104.t1.stop1Ggra10104.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 95785..95787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10104.t1.CDS1Ggra10104.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 95785..96582 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10104.t1.exon1Ggra10104.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 95785..96582 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10104.t1.start1Ggra10104.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 96580..96582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10104.t1Ggra10104.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 95785..96582 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10104.t1 ID=Ggra10104.t1|Name=Ggra10104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MVDTATGLVTTVVPPAFDRAAVGMAQRNGSLYVAGAGFVGVFRVPPRMFV
YDVRSGETLRACDAPMRALINDVAVDDRFAYFTDTLLGNVYALPVNSGKC
DFDTIPLPRDSFPEGSGAFSANGIVRFASGLVVANIGVGSLFFVDLDTNA
TQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGND
RRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDAL
FELVALRVGAPTCSL*
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spliced messenger RNA

>Ggra10104.t1 ID=Ggra10104.t1|Name=Ggra10104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000113_pilon:95785..96582- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGATACTGCCACGGGCCTCGTCACCACCGTTGTGCCGCCCGCCTT
CGATCGCGCCGCCGTCGGCATGGCGCAGCGCAATGGCTCGCTGTACGTCG
CGGGCGCCGGCTTTGTCGGCGTGTTTCGTGTGCCGCCGCGTATGTTTGTT
TACGACGTGCGCAGTGGAGAGACGCTGCGCGCTTGCGATGCGCCTATGCG
CGCGTTGATCAATGACGTAGCCGTGGATGATCGCTTTGCGTACTTCACCG
ATACTTTGTTGGGCAATGTTTACGCGCTGCCGGTCAATAGTGGCAAGTGT
GACTTTGACACCATCCCACTTCCGCGCGATAGCTTTCCGGAGGGCAGTGG
CGCCTTCTCGGCGAACGGCATCGTTAGGTTCGCTTCCGGACTCGTCGTGG
CTAACATTGGCGTCGGCTCGCTCTTCTTCGTCGACCTGGACACCAACGCC
ACGCAACGTCTGCTACCAGACGGAGCGGTGCCGGGCGCAGACGGGCTGGA
GCTTCAGCTTGATCCCAACGACCAAACGCAAGCCACGCTGTATCTCGCGC
AGAGCATGCCGAACCTCATCTCGGTGTGGCGGCTCAGCGTGGGCAACGAC
CGCCGTGTGGGCTTGCAGTTTGTACGCAACGTCACTTCGTCGCTATTTGA
TACGCCCTCCACTCTGGCGCTTGGTGACGGCACATTGCTTGTCGCTAATG
GCCGCTTTATGGACTTCCCGTTGACAGTGGAGGTGCCGGATGATGCGCTG
TTTGAACTGGTTGCGTTGCGCGTGGGTGCCCCTACTTGCTCTTTGTGA
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protein sequence of Ggra10104.t1

>Ggra10104.t1 ID=Ggra10104.t1|Name=Ggra10104.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MVDTATGLVTTVVPPAFDRAAVGMAQRNGSLYVAGAGFVGVFRVPPRMFV
YDVRSGETLRACDAPMRALINDVAVDDRFAYFTDTLLGNVYALPVNSGKC
DFDTIPLPRDSFPEGSGAFSANGIVRFASGLVVANIGVGSLFFVDLDTNA
TQRLLPDGAVPGADGLELQLDPNDQTQATLYLAQSMPNLISVWRLSVGND
RRVGLQFVRNVTSSLFDTPSTLALGDGTLLVANGRFMDFPLTVEVPDDAL
FELVALRVGAPTCSL*
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mRNA from alignment at tig00000113_pilon:95785..96582-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10104.t1 ID=Ggra10104.t1|Name=Ggra10104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000113_pilon:95785..96582- (Gracilaria gracilis GNS1m male)
ATGGTGGATACTGCCACGGGCCTCGTCACCACCGTTGTGCCGCCCGCCTT
CGATCGCGCCGCCGTCGGCATGGCGCAGCGCAATGGCTCGCTGTACGTCG
CGGGCGCCGGCTTTGTCGGCGTGTTTCGTGTGCCGCCGCGTATGTTTGTT
TACGACGTGCGCAGTGGAGAGACGCTGCGCGCTTGCGATGCGCCTATGCG
CGCGTTGATCAATGACGTAGCCGTGGATGATCGCTTTGCGTACTTCACCG
ATACTTTGTTGGGCAATGTTTACGCGCTGCCGGTCAATAGTGGCAAGTGT
GACTTTGACACCATCCCACTTCCGCGCGATAGCTTTCCGGAGGGCAGTGG
CGCCTTCTCGGCGAACGGCATCGTTAGGTTCGCTTCCGGACTCGTCGTGG
CTAACATTGGCGTCGGCTCGCTCTTCTTCGTCGACCTGGACACCAACGCC
ACGCAACGTCTGCTACCAGACGGAGCGGTGCCGGGCGCAGACGGGCTGGA
GCTTCAGCTTGATCCCAACGACCAAACGCAAGCCACGCTGTATCTCGCGC
AGAGCATGCCGAACCTCATCTCGGTGTGGCGGCTCAGCGTGGGCAACGAC
CGCCGTGTGGGCTTGCAGTTTGTACGCAACGTCACTTCGTCGCTATTTGA
TACGCCCTCCACTCTGGCGCTTGGTGACGGCACATTGCTTGTCGCTAATG
GCCGCTTTATGGACTTCCCGTTGACAGTGGAGGTGCCGGATGATGCGCTG
TTTGAACTGGTTGCGTTGCGCGTGGGTGCCCCTACTTGCTCTTTGTGA
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Coding sequence (CDS) from alignment at tig00000113_pilon:95785..96582-

>Ggra10104.t1 ID=Ggra10104.t1|Name=Ggra10104.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000113_pilon:95785..96582- (Gracilaria gracilis GNS1m male)
ATGGTGGATACTGCCACGGGCCTCGTCACCACCGTTGTGCCGCCCGCCTT
CGATCGCGCCGCCGTCGGCATGGCGCAGCGCAATGGCTCGCTGTACGTCG
CGGGCGCCGGCTTTGTCGGCGTGTTTCGTGTGCCGCCGCGTATGTTTGTT
TACGACGTGCGCAGTGGAGAGACGCTGCGCGCTTGCGATGCGCCTATGCG
CGCGTTGATCAATGACGTAGCCGTGGATGATCGCTTTGCGTACTTCACCG
ATACTTTGTTGGGCAATGTTTACGCGCTGCCGGTCAATAGTGGCAAGTGT
GACTTTGACACCATCCCACTTCCGCGCGATAGCTTTCCGGAGGGCAGTGG
CGCCTTCTCGGCGAACGGCATCGTTAGGTTCGCTTCCGGACTCGTCGTGG
CTAACATTGGCGTCGGCTCGCTCTTCTTCGTCGACCTGGACACCAACGCC
ACGCAACGTCTGCTACCAGACGGAGCGGTGCCGGGCGCAGACGGGCTGGA
GCTTCAGCTTGATCCCAACGACCAAACGCAAGCCACGCTGTATCTCGCGC
AGAGCATGCCGAACCTCATCTCGGTGTGGCGGCTCAGCGTGGGCAACGAC
CGCCGTGTGGGCTTGCAGTTTGTACGCAACGTCACTTCGTCGCTATTTGA
TACGCCCTCCACTCTGGCGCTTGGTGACGGCACATTGCTTGTCGCTAATG
GCCGCTTTATGGACTTCCCGTTGACAGTGGAGGTGCCGGATGATGCGCTG
TTTGAACTGGTTGCGTTGCGCGTGGGTGCCCCTACTTGCTCTTTGTGA
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