Ggra11139.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11139.t1
Unique NameGgra11139.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Homology
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A2V3J3H2 (Putative RNA-binding protein RbpB n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3H2_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 1.050e-99
Identity = 148/196 (75.51%), Postives = 165/196 (84.18%), Query Frame = 0
Query:   48 HLPRRTHVRPRQADVAAVSQDAFLQCVQCLAVYHVEPEELEGVARVVSCSACLHEWYATEDDLIWGDEQANAALAIAAEQSDGTNPFIAARGVEKKQQNGEDDGPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTGKKTASRSK 243
            H PRR  V P   D A   Q+AFLQC+QCLAVYHVEPEELEG  RVV+CSACLHEWYA EDDLIWGDEQA+AAL +A E++ G+N F+AARGV KKQQ   +DGPINVFVGNLSFRATEEDLYRAFSGYGAVL CELP+DSAG+P+GYAFVEMQSRQ+GM+AIECLQGTSIVGRD+SLS AKPR    KK   R+K
Sbjct:   76 HSPRRRRVTPVALDHAPGPQEAFLQCIQCLAVYHVEPEELEGPPRVVACSACLHEWYANEDDLIWGDEQASAALKLATERTQGSNAFVAARGVAKKQQAQNNDGPINVFVGNLSFRATEEDLYRAFSGYGAVLKCELPADSAGIPKGYAFVEMQSRQSGMKAIECLQGTSIVGRDISLSIAKPRTPDAKKATGRTK 271          
BLAST of Ggra11139.t1 vs. uniprot
Match: R7QL30 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL30_CHOCR)

HSP 1 Score: 200 bits (509), Expect = 4.500e-59
Identity = 117/245 (47.76%), Postives = 145/245 (59.18%), Query Frame = 0
Query:   58 RQADVAAVSQDAFLQCVQCLAVYHVEPEELEGVARVVSCSACLHEWYATEDDLIWGDEQANAALAIAAE--------QSDGTNPFIAARGV------------------EKKQQNGEDDGP--------------------------------INVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPH--TGKKTASRS 242
            R +D A    +++LQCV+C AVY VEPEELEG  RVV CSACLHEWYA+E DL+WG+E+A +ALA  A         +S+G     AA+GV                  EK +  GE DG                                  NVFVGNLSFRATEEDLYRAFSGYGAVL C++P+D +G  RGY FVEM++R++ ++AIE LQGTSI+GRDVSL+EA+PR      KK  SR+
Sbjct:   68 RNSDTA----ESYLQCVECAAVYVVEPEELEGAPRVVGCSACLHEWYASETDLLWGEEEALSALAAHASFEAKSKTVKSEGERAINAAKGVGTAMKKDVPAPAMTAKTAEKNKPGGEKDGAPEAAVLSKDPTRDSPGENRSSTSKQEADKEGHFNVFVGNLSFRATEEDLYRAFSGYGAVLRCQVPADQSGASRGYGFVEMRTRESALKAIESLQGTSIMGRDVSLNEARPRKEGFVAKKQQSRT 308          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A7S0ZBM5 (Hypothetical protein (Fragment) n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBM5_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 1.800e-25
Identity = 71/201 (35.32%), Postives = 95/201 (47.26%), Query Frame = 0
Query:   63 AAVSQDAFLQCVQCLAVYHVEPEELEG------------------------VARVVSCSACLHEWYATEDDLIWGDEQANAAL--------AIAAEQSDGTNPFIAARGVEKKQQNGEDDGPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPR 231
            +A   D FLQC +C AVY  E EELE                           R+V CSAC+HEW+ ++ DLI GD+ A  AL         +AA+    ++P    +             P+ +F  NL+FR TE +L  AF  YG V+  E+P D  G  RG+ F+EM  R  G +AI  L G  + GR + LS A PR
Sbjct:  314 SAGKPDTFLQCPECGAVYIFEREELENDPLYPVTESISLSDSTSSITPNSRPERIVRCSACIHEWFVSQRDLILGDDAAIKALEKSARSPSCVAAQMKSRSSPIALPK-----------PDPMTIFARNLAFRVTEVELREAFGAYGRVVRVEIPCDRFGQSRGFGFIEMADRADGEQAILALNGVVLSGRTIELSVALPR 503          
BLAST of Ggra11139.t1 vs. uniprot
Match: M2Y9A5 (RNA recognition motif (RRM)-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y9A5_GALSU)

HSP 1 Score: 107 bits (268), Expect = 9.800e-24
Identity = 68/186 (36.56%), Postives = 97/186 (52.15%), Query Frame = 0
Query:   68 DAFLQCVQCLAVYHVEPEELEGVARVVSCSACLHEWYATEDDLIWGDEQANAALAIAAEQSDGTNPFIAARGVEKKQQ--------------NGED-----------DGPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEA 228
            + F+QC +C  +Y V+ EELE   R V C  CLHEW ATEDDL+  D     +L +  E+    N       VEK  +               GED           +G   +FVGNLS++A+E+DL+R FS  G V +  +P + + + RG+AF+ M    A   A++ LQG +IVGR + LSE+
Sbjct:   93 ETFIQCPECGTIYSVQVEELES-QRAVRCGDCLHEWLATEDDLLEIDPVYVNSLLLEREEQIKENGSFGKWQVEKDSKVLSSLQDADSTEALQGEDLKKKAAQSRKREGEKVLFVGNLSYKASEKDLFRVFSSCGQVFDVRIPRNHSKVHRGFAFIRMNLTGAST-ALQSLQGANIVGRPIVLSES 276          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A7S0BLP8 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLP8_9RHOD)

HSP 1 Score: 102 bits (255), Expect = 1.690e-23
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 0
Query:   99 CLHEWYATEDDLIWGDEQANAALAIAAEQSDGTNPFIAARGVEKKQQNGEDDGPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEA 228
            CLHEW A E ++IWG++ A  ++  A E+     P        + ++   D+  ++VFVG L++  TE+DL+ AF  +G +  C++P   AG PRG  FVE +++   +RAIE L G SI+GR +SLS A
Sbjct:    2 CLHEWRAFEKEIIWGEDAAIKSIKDAPERPLRRRP--------RSRRTSRDENALSVFVGGLAYSCTEDDLFAAFCSFGEISRCQIPQ-KAGTPRGIGFVEFRNKDNAIRAIETLDGASILGRKISLSVA 122          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A5M6D887 (RNA-binding protein n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D887_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 4.460e-17
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0
Query:  153 INVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSD-SAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTGK 236
            +N++VGNLSF ATE D+  AF  +GAV +  +  D   G  RG+ FVEMQ+R++GM AI  +   SI GRDV+++EAKPR   G+
Sbjct:    1 MNIYVGNLSFDATENDIEAAFGEFGAVKSVNVIKDRETGRSRGFGFVEMQNRESGMEAISAIDQKSICGRDVTVNEAKPRAERGR 85          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A367Q3C1 (RNA-binding protein n=10 Tax=Nostocales TaxID=1161 RepID=A0A367Q3C1_9NOSO)

HSP 1 Score: 82.4 bits (202), Expect = 1.790e-16
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 0
Query:  153 INVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSD-SAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPR 231
            ++++VGNLS++ TEEDL RAF+ YG V   +LP+D   G PRG+AFVEM++      AIE L G   +GRD+ +++AKPR
Sbjct:    1 MSIYVGNLSYQVTEEDLKRAFAEYGTVNRVQLPTDRETGRPRGFAFVEMETEAQETAAIEALDGAEWMGRDLKVNKAKPR 80          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A2S6CUU0 (RNA-binding protein n=1 Tax=Cuspidothrix issatschenkoi CHARLIE-1 TaxID=2052836 RepID=A0A2S6CUU0_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 2.220e-16
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  153 INVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSD-SAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTG 235
            ++++VGNLS++ TEEDL RAF+ YG V   +LP+D   G PRG+AFVEM        AIE L G   +GRD+ +++AKPR   G
Sbjct:    1 MSIYVGNLSYQVTEEDLKRAFAEYGTVSRVQLPTDRETGRPRGFAFVEMSQEAEETAAIEALDGAEWMGRDLRVNKAKPREDRG 84          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A7C3PDV1 (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3PDV1_9DELT)

HSP 1 Score: 82.0 bits (201), Expect = 2.780e-16
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 0
Query:  153 INVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDS-AGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTGK 236
            +N++VGNLSF A+EEDL + FSG+G V +  +  D  +G PRG+ F+EM  R     AIE L G  ++GR +++SEA+PR   G+
Sbjct:    1 MNIYVGNLSFDASEEDLQKLFSGFGQVSSVTIVRDKYSGQPRGFGFIEMPERSEAQAAIESLNGKELLGRSINVSEARPRTDRGR 85          
BLAST of Ggra11139.t1 vs. uniprot
Match: A0A1Z4UJR6 (RNA-binding region RNP-1 n=6 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UJR6_9CYAN)

HSP 1 Score: 82.0 bits (201), Expect = 3.020e-16
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  153 INVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSD-SAGLPRGYAFVEMQSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTG 235
            ++++VGNLS++ T EDL  AF+ YG V N +LP+D   G PRG+AFVEM S      AIE L G   +GRD+ +++AKPR   G
Sbjct:    1 MSIYVGNLSYQVTAEDLKLAFAEYGTVSNVQLPTDRETGRPRGFAFVEMSSEAEEKAAIEALDGAEWMGRDLKVNKAKPREERG 84          
The following BLAST results are available for this feature:
BLAST of Ggra11139.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3H21.050e-9975.51Putative RNA-binding protein RbpB n=1 Tax=Gracilar... [more]
R7QL304.500e-5947.76RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S0ZBM51.800e-2535.32Hypothetical protein (Fragment) n=2 Tax=Timspurcki... [more]
M2Y9A59.800e-2436.56RNA recognition motif (RRM)-containing protein n=1... [more]
A0A7S0BLP81.690e-2339.23Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5M6D8874.460e-1749.41RNA-binding protein n=1 Tax=Roseiconus nitratiredu... [more]
A0A367Q3C11.790e-1650.00RNA-binding protein n=10 Tax=Nostocales TaxID=1161... [more]
A0A2S6CUU02.220e-1648.81RNA-binding protein n=1 Tax=Cuspidothrix issatsche... [more]
A0A7C3PDV12.780e-1645.88RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A1Z4UJR63.020e-1648.81RNA-binding region RNP-1 n=6 Tax=Sphaerospermopsis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 154..226
e-value: 2.0E-21
score: 87.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 155..223
e-value: 1.3E-16
score: 60.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 153..230
score: 17.557568
IPR011723Zinc finger/thioredoxin putativeTIGRFAMTIGR02098TIGR02098coord: 71..105
e-value: 3.7E-6
score: 24.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 136..253
e-value: 7.3E-24
score: 86.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..250
NoneNo IPR availablePANTHERPTHR48039RNA-BINDING MOTIF PROTEIN 14Bcoord: 142..248
NoneNo IPR availableCDDcd00590RRM_SFcoord: 155..226
e-value: 9.43683E-22
score: 84.2789
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 141..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:110969..112105 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11139.t1Ggra11139.t1Gracilaria gracilis GNS1m malemRNAtig00000110_pilon 110969..112105 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11139.t1 ID=Ggra11139.t1|Name=Ggra11139.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MPPPPSSFAAPPPLTRSAFRSNFSRARRRRALPQCAQPPAVPCLPLTHLP
RRTHVRPRQADVAAVSQDAFLQCVQCLAVYHVEPEELEGVARVVSCSACL
HEWYATEDDLIWGDEQANAALAIAAEQSDGTNPFIAARGVEKKQQNGEDD
GPINVFVGNLSFRATEEDLYRAFSGYGAVLNCELPSDSAGLPRGYAFVEM
QSRQAGMRAIECLQGTSIVGRDVSLSEAKPRPHTGKKTASRSKFKRRDTK
VILRGPIQFPQSNSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR011723Znf/thioredoxin_put
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf