Ggra11136.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11136.t1
Unique NameGgra11136.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:103984..105639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709000.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue1.43e-130
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11136Ggra11136Gracilaria gracilis GNS1m malegenetig00000110_pilon 103984..105639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11136.t1.stop1Ggra11136.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 103984..103986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11136.t1.CDS1Ggra11136.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 103984..105639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11136.t1.exon1Ggra11136.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 103984..105639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11136.t1.start1Ggra11136.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 105637..105639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11136.t1Ggra11136.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 103984..105639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11136.t1 ID=Ggra11136.t1|Name=Ggra11136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp
MRAQKPPLPPSRALTKGAYRNPVSLEAMGDALHKVHRSKKTGTTSNNAQT
SLAPCSSKSEEKSGNHELKDTSASHVNHRPAFAAARDNYIQWSLLVIAWF
IRFYRLGEPAAVVFDEYHFGTFVDNILSGATHFDIHPPLGKLTLAFFGWH
VGYRPDPSFGYEEIGKAYNSVLYYPLREVAAVFGVITVPLMYATARMMGM
SWVGALVCAGLFCFDNLNIIESRLILMDSQITFYLVLSLYCAFKLWKTTP
RTWSRFLWLTATGFVCGCSISVKWTALATPGLIAIVSFFALHFIDDPLTL
LECAWAGIVGLGWYVALFYVHFKTLTHTGPGVNFFKSDFRSTLIGEPNYD
AEATREPFHKLFLYLNKYMFSANAGITTRHHWESYWYQWIVNWRGLLYYN
KDVDGKWASVYLHCNPIVCILCTVCMGIFIMSRLFAVRYRNLKLFKPQTR
VLLSLAMRSGTFLFWGWIINLLPYILVDRSAFVYHYLPGLIYAQLLAGLM
VDQLPIRLRVMTMLILMSMVIAVFVKYIPWIYCFPLSSEEHSQLRWYGRW
D*
back to top

spliced messenger RNA

>Ggra11136.t1 ID=Ggra11136.t1|Name=Ggra11136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000110_pilon:103984..105639- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGCAGAAACCGCCACTTCCTCCTTCTCGTGCATTGACCAAGGG
TGCCTACAGGAATCCGGTGTCTTTGGAAGCCATGGGTGACGCGCTCCACA
AAGTCCACAGGAGTAAGAAGACCGGGACGACTTCGAACAATGCCCAGACA
TCGCTTGCGCCCTGCTCAAGCAAATCCGAAGAGAAGTCAGGTAATCATGA
ATTGAAAGACACATCGGCTTCGCACGTCAATCATCGTCCAGCTTTTGCGG
CCGCCCGGGACAACTACATTCAGTGGTCGCTGCTTGTCATTGCATGGTTT
ATTCGATTCTACAGACTTGGTGAACCAGCCGCAGTAGTTTTCGATGAATA
CCATTTCGGCACCTTTGTGGACAACATCCTCTCAGGTGCTACGCACTTTG
ATATTCACCCACCTCTCGGAAAACTTACGCTAGCGTTTTTCGGATGGCAT
GTGGGCTATCGCCCCGATCCCAGTTTTGGGTATGAAGAAATTGGGAAGGC
ATACAACTCGGTGTTGTACTATCCGCTTCGTGAAGTTGCTGCTGTGTTCG
GAGTGATCACTGTCCCGCTGATGTATGCCACTGCTCGAATGATGGGAATG
TCTTGGGTCGGGGCTCTTGTATGCGCCGGGCTTTTTTGCTTTGATAACTT
AAACATCATCGAGAGTAGGTTGATATTGATGGACTCGCAAATTACTTTCT
ACCTGGTTCTCTCCCTTTACTGCGCCTTCAAATTATGGAAAACTACTCCC
CGGACATGGTCGCGTTTCTTATGGCTCACCGCGACAGGATTTGTGTGCGG
ATGTTCAATAAGTGTGAAGTGGACCGCACTGGCGACCCCAGGTCTGATTG
CCATTGTTTCTTTCTTTGCTCTACATTTCATTGATGACCCGTTGACTTTG
CTCGAATGTGCATGGGCTGGCATCGTCGGCTTGGGTTGGTACGTTGCACT
GTTTTACGTTCACTTTAAGACTCTTACTCATACTGGGCCGGGAGTGAATT
TCTTCAAGTCCGATTTCCGATCAACCCTGATTGGGGAACCAAATTATGAC
GCGGAAGCAACCCGGGAACCCTTTCATAAGCTTTTCCTCTATCTAAACAA
ATACATGTTTAGTGCCAACGCTGGCATAACAACAAGGCATCACTGGGAGA
GTTATTGGTATCAGTGGATTGTGAACTGGCGCGGACTCCTTTACTACAAC
AAAGACGTCGATGGGAAATGGGCTTCTGTTTACCTTCACTGCAACCCTAT
CGTATGTATTCTTTGCACTGTATGTATGGGCATATTCATAATGTCAAGGC
TCTTTGCAGTGCGATACAGGAACCTGAAATTATTCAAGCCTCAGACGCGA
GTTTTGTTAAGTTTGGCAATGCGCTCTGGTACGTTTCTGTTCTGGGGTTG
GATAATCAACCTATTGCCCTATATCCTTGTCGATCGCTCTGCGTTTGTAT
ACCATTACCTTCCTGGGCTAATTTACGCGCAGCTGCTCGCTGGTCTGATG
GTCGACCAGCTTCCAATCCGCCTAAGGGTCATGACAATGCTCATTTTGAT
GTCAATGGTCATTGCCGTGTTTGTGAAGTACATCCCGTGGATTTACTGCT
TCCCACTCTCCAGTGAGGAACATAGTCAACTGCGATGGTATGGTAGATGG
GACTGA
back to top

protein sequence of Ggra11136.t1

>Ggra11136.t1 ID=Ggra11136.t1|Name=Ggra11136.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MRAQKPPLPPSRALTKGAYRNPVSLEAMGDALHKVHRSKKTGTTSNNAQT
SLAPCSSKSEEKSGNHELKDTSASHVNHRPAFAAARDNYIQWSLLVIAWF
IRFYRLGEPAAVVFDEYHFGTFVDNILSGATHFDIHPPLGKLTLAFFGWH
VGYRPDPSFGYEEIGKAYNSVLYYPLREVAAVFGVITVPLMYATARMMGM
SWVGALVCAGLFCFDNLNIIESRLILMDSQITFYLVLSLYCAFKLWKTTP
RTWSRFLWLTATGFVCGCSISVKWTALATPGLIAIVSFFALHFIDDPLTL
LECAWAGIVGLGWYVALFYVHFKTLTHTGPGVNFFKSDFRSTLIGEPNYD
AEATREPFHKLFLYLNKYMFSANAGITTRHHWESYWYQWIVNWRGLLYYN
KDVDGKWASVYLHCNPIVCILCTVCMGIFIMSRLFAVRYRNLKLFKPQTR
VLLSLAMRSGTFLFWGWIINLLPYILVDRSAFVYHYLPGLIYAQLLAGLM
VDQLPIRLRVMTMLILMSMVIAVFVKYIPWIYCFPLSSEEHSQLRWYGRW
D*
back to top

mRNA from alignment at tig00000110_pilon:103984..105639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11136.t1 ID=Ggra11136.t1|Name=Ggra11136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000110_pilon:103984..105639- (Gracilaria gracilis GNS1m male)
ATGCGCGCGCAGAAACCGCCACTTCCTCCTTCTCGTGCATTGACCAAGGG
TGCCTACAGGAATCCGGTGTCTTTGGAAGCCATGGGTGACGCGCTCCACA
AAGTCCACAGGAGTAAGAAGACCGGGACGACTTCGAACAATGCCCAGACA
TCGCTTGCGCCCTGCTCAAGCAAATCCGAAGAGAAGTCAGGTAATCATGA
ATTGAAAGACACATCGGCTTCGCACGTCAATCATCGTCCAGCTTTTGCGG
CCGCCCGGGACAACTACATTCAGTGGTCGCTGCTTGTCATTGCATGGTTT
ATTCGATTCTACAGACTTGGTGAACCAGCCGCAGTAGTTTTCGATGAATA
CCATTTCGGCACCTTTGTGGACAACATCCTCTCAGGTGCTACGCACTTTG
ATATTCACCCACCTCTCGGAAAACTTACGCTAGCGTTTTTCGGATGGCAT
GTGGGCTATCGCCCCGATCCCAGTTTTGGGTATGAAGAAATTGGGAAGGC
ATACAACTCGGTGTTGTACTATCCGCTTCGTGAAGTTGCTGCTGTGTTCG
GAGTGATCACTGTCCCGCTGATGTATGCCACTGCTCGAATGATGGGAATG
TCTTGGGTCGGGGCTCTTGTATGCGCCGGGCTTTTTTGCTTTGATAACTT
AAACATCATCGAGAGTAGGTTGATATTGATGGACTCGCAAATTACTTTCT
ACCTGGTTCTCTCCCTTTACTGCGCCTTCAAATTATGGAAAACTACTCCC
CGGACATGGTCGCGTTTCTTATGGCTCACCGCGACAGGATTTGTGTGCGG
ATGTTCAATAAGTGTGAAGTGGACCGCACTGGCGACCCCAGGTCTGATTG
CCATTGTTTCTTTCTTTGCTCTACATTTCATTGATGACCCGTTGACTTTG
CTCGAATGTGCATGGGCTGGCATCGTCGGCTTGGGTTGGTACGTTGCACT
GTTTTACGTTCACTTTAAGACTCTTACTCATACTGGGCCGGGAGTGAATT
TCTTCAAGTCCGATTTCCGATCAACCCTGATTGGGGAACCAAATTATGAC
GCGGAAGCAACCCGGGAACCCTTTCATAAGCTTTTCCTCTATCTAAACAA
ATACATGTTTAGTGCCAACGCTGGCATAACAACAAGGCATCACTGGGAGA
GTTATTGGTATCAGTGGATTGTGAACTGGCGCGGACTCCTTTACTACAAC
AAAGACGTCGATGGGAAATGGGCTTCTGTTTACCTTCACTGCAACCCTAT
CGTATGTATTCTTTGCACTGTATGTATGGGCATATTCATAATGTCAAGGC
TCTTTGCAGTGCGATACAGGAACCTGAAATTATTCAAGCCTCAGACGCGA
GTTTTGTTAAGTTTGGCAATGCGCTCTGGTACGTTTCTGTTCTGGGGTTG
GATAATCAACCTATTGCCCTATATCCTTGTCGATCGCTCTGCGTTTGTAT
ACCATTACCTTCCTGGGCTAATTTACGCGCAGCTGCTCGCTGGTCTGATG
GTCGACCAGCTTCCAATCCGCCTAAGGGTCATGACAATGCTCATTTTGAT
GTCAATGGTCATTGCCGTGTTTGTGAAGTACATCCCGTGGATTTACTGCT
TCCCACTCTCCAGTGAGGAACATAGTCAACTGCGATGGTATGGTAGATGG
GACTGA
back to top

Coding sequence (CDS) from alignment at tig00000110_pilon:103984..105639-

>Ggra11136.t1 ID=Ggra11136.t1|Name=Ggra11136.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00000110_pilon:103984..105639- (Gracilaria gracilis GNS1m male)
ATGCGCGCGCAGAAACCGCCACTTCCTCCTTCTCGTGCATTGACCAAGGG
TGCCTACAGGAATCCGGTGTCTTTGGAAGCCATGGGTGACGCGCTCCACA
AAGTCCACAGGAGTAAGAAGACCGGGACGACTTCGAACAATGCCCAGACA
TCGCTTGCGCCCTGCTCAAGCAAATCCGAAGAGAAGTCAGGTAATCATGA
ATTGAAAGACACATCGGCTTCGCACGTCAATCATCGTCCAGCTTTTGCGG
CCGCCCGGGACAACTACATTCAGTGGTCGCTGCTTGTCATTGCATGGTTT
ATTCGATTCTACAGACTTGGTGAACCAGCCGCAGTAGTTTTCGATGAATA
CCATTTCGGCACCTTTGTGGACAACATCCTCTCAGGTGCTACGCACTTTG
ATATTCACCCACCTCTCGGAAAACTTACGCTAGCGTTTTTCGGATGGCAT
GTGGGCTATCGCCCCGATCCCAGTTTTGGGTATGAAGAAATTGGGAAGGC
ATACAACTCGGTGTTGTACTATCCGCTTCGTGAAGTTGCTGCTGTGTTCG
GAGTGATCACTGTCCCGCTGATGTATGCCACTGCTCGAATGATGGGAATG
TCTTGGGTCGGGGCTCTTGTATGCGCCGGGCTTTTTTGCTTTGATAACTT
AAACATCATCGAGAGTAGGTTGATATTGATGGACTCGCAAATTACTTTCT
ACCTGGTTCTCTCCCTTTACTGCGCCTTCAAATTATGGAAAACTACTCCC
CGGACATGGTCGCGTTTCTTATGGCTCACCGCGACAGGATTTGTGTGCGG
ATGTTCAATAAGTGTGAAGTGGACCGCACTGGCGACCCCAGGTCTGATTG
CCATTGTTTCTTTCTTTGCTCTACATTTCATTGATGACCCGTTGACTTTG
CTCGAATGTGCATGGGCTGGCATCGTCGGCTTGGGTTGGTACGTTGCACT
GTTTTACGTTCACTTTAAGACTCTTACTCATACTGGGCCGGGAGTGAATT
TCTTCAAGTCCGATTTCCGATCAACCCTGATTGGGGAACCAAATTATGAC
GCGGAAGCAACCCGGGAACCCTTTCATAAGCTTTTCCTCTATCTAAACAA
ATACATGTTTAGTGCCAACGCTGGCATAACAACAAGGCATCACTGGGAGA
GTTATTGGTATCAGTGGATTGTGAACTGGCGCGGACTCCTTTACTACAAC
AAAGACGTCGATGGGAAATGGGCTTCTGTTTACCTTCACTGCAACCCTAT
CGTATGTATTCTTTGCACTGTATGTATGGGCATATTCATAATGTCAAGGC
TCTTTGCAGTGCGATACAGGAACCTGAAATTATTCAAGCCTCAGACGCGA
GTTTTGTTAAGTTTGGCAATGCGCTCTGGTACGTTTCTGTTCTGGGGTTG
GATAATCAACCTATTGCCCTATATCCTTGTCGATCGCTCTGCGTTTGTAT
ACCATTACCTTCCTGGGCTAATTTACGCGCAGCTGCTCGCTGGTCTGATG
GTCGACCAGCTTCCAATCCGCCTAAGGGTCATGACAATGCTCATTTTGAT
GTCAATGGTCATTGCCGTGTTTGTGAAGTACATCCCGTGGATTTACTGCT
TCCCACTCTCCAGTGAGGAACATAGTCAACTGCGATGGTATGGTAGATGG
GACTGA
back to top