Ggra10444.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10444.t1
Unique NameGgra10444.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:325461..326903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010050426.1
PFAMsAmidohydro_2,Gln-synt_C,Gln-synt_N_2
Max annot lvl35493|Streptophyta
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
GOsGO:0000003,GO:0000905,GO:0001896,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009403,GO:0009404,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010720,GO:0010913,GO:0010914,GO:0012501,GO:0018130,GO:0019222,GO:0019438,GO:0019748,GO:0019954,GO:0022414,GO:0030154,GO:0030436,GO:0030582,GO:0030584,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032502,GO:0034305,GO:0043385,GO:0043386,GO:0043455,GO:0043934,GO:0043937,GO:0043938,GO:0044237,GO:0044249,GO:0044424,GO:0044464,GO:0044550,GO:0045460,GO:0045461,GO:0045595,GO:0045597,GO:0046483,GO:0048315,GO:0048468,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0060284,GO:0061458,GO:0061794,GO:0065007,GO:0071704,GO:0075259,GO:0075306,GO:0075307,GO:1900376,GO:1900378,GO:1901360,GO:1901362,GO:1901376,GO:1901378,GO:1901576,GO:1903664,GO:1903666
Evalue1.21e-57
EggNOG OGsCOG0174@1|root,KOG0683@2759|Eukaryota,37RX7@33090|Viridiplantae,3GC1F@35493|Streptophyta
EC6.3.1.2
DescriptionBelongs to the glutamine synthetase family
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10444Ggra10444Gracilaria gracilis GNS1m malegenetig00000108_pilon 325461..326903 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10444.t1.start1Ggra10444.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 325461..325463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10444.t1.CDS1Ggra10444.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 325461..326903 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10444.t1.exon1Ggra10444.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 325461..326903 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10444.t1.stop1Ggra10444.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 326901..326903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10444.t1Ggra10444.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 325461..326903 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10444.t1 ID=Ggra10444.t1|Name=Ggra10444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MAANGERGGDDDDGGDGGGGGGGGGGVVAPRAAPMQAVRLLRIVLVDYSA
IRRTKLVPYCARSRGAPNALFVKGGLLLTAEGSLPPHAPLSAVGEVYMLR
YSPYTHAAPPHHSAPQLPAPRVIAWPTHANHSLCVAHLHERNGQPWLFCP
RQRLCRAVQLLAAHDLTMLAGFEMEFVLLRGHPSDARSLEPFGTAGGYAL
HSQVDAAARVLDHMVAALAHARIGVSMVHAESAAGQFEIVLQHKPLLTAV
DELVMAREIVRAVACSHSLYATFLPKYGDAGSGAHVHFSLAGHFGGSAKL
YEQHVGMTPLAQQFVAGVLEALPWLGFLTNASCASYARLQPQRWVGVYKV
WGIANKEAPLRLALDRSNVELKTLDALSNPYLAMAGVVAAGLNGVRASMQ
LPPPCQHDPHDVERSKRAERLPASLEESIDRFRDAATRGCVRDVLPDELV
HSLLALKLHQVQCVKRHGLDALLKRLLTLH*
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spliced messenger RNA

>Ggra10444.t1 ID=Ggra10444.t1|Name=Ggra10444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000108_pilon:325461..326903+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCAACGGCGAGCGCGGTGGCGACGATGATGAcggcggcgacgg
cggcggcggcggcggcggcggcggcggcgTGGTGGCGCCGCGCGCCGCGC
CCATGCAGGCCGTGCGGCTGCTGCGCATCGTGCTGGTGGACTACAGCGCC
ATCCGCCGCACCAAGCTGGTGCCGTACTgcgcgcgctcgcgcggcgcgcc
caacgcgcTCTTCGTCAAGGGCGGGCTGCTACTCACGGCGGAGGGTTCGC
TGCCGCCGCACGCGCCGCTAAGCGCGGTGGGCGAGGTGTACATGCTGCGC
TACTCGCCGTACACGCACGcggcgccgccgcaccacagcgcgccgcagct
gccggcgccgcGCGTGATTGCGTGGCCCACGCACGCCAACCACAGCCTTT
GCGTGGCGCACCTGCACGAGCGCAACGGCCAGCCGTGGCTGTTCTGCCCG
CGCCAGCGGCTGTGTCGCGCCGTGCAGCTGCTGGCCGCGCACGACCTCAC
CATGCTGGCGGGCTTCGAGATGGAGTTTGTGCTGCTGCGCGGCCACCCGA
GTGACGCGCGTTCGCTCGAGCCGTTCGGCACGGCGGGCGGCTACGCGCTG
CACTCGCAGGTGGATGCGGCGGCGCGCGTGCTGGATCACATGGTGGCGGC
GCTGGCGCACGCGCGCATCGGCGTGAGCATGGTGCACGCCGAGTCGGCGG
CGGGCCAGTTCGAAATCGTTCTGCAGCACAAGCCGCTGCTCACGGCGGTG
GACGAATTGGTGATGGCGCGCGAAATCGTGCGCGCCGTAGCCTGCAGCCA
CTCATTGTACGCCACCTTCTTGCCCAAGTACGGCGACGCCGGCAGTGGCG
CGCATGTGCATTTCAGTCTAGCTGGCCACTTTGGAGGCAGCGCAAAGCTG
TACGAGCAGCATGTGGGCATGACGCCGCTGGCGCAGCAGTTTGTGGCCGG
CGTGCTGGAGGCGCTGCCGTGGCTGGGCTTTCTGACCAATGCGAGCTGCG
CCAGTTACGCGCGGCTGCAGCCGCAGCGTTGGGTGGGCGTGTACAAGGTG
TGGGGCATTGCGAACAAGGAGGCGCCGCTACGACTGGCACTGGACCGCTC
AAACGTGGAACTCAAGACGCTTGACGCGCTGTCCAACCCGTACCTGGCCA
TGGCGGGCGTGGTGGCGGCGGGGCTCAACGGCGTGCGCGCAAGCATGCAG
CTGCCGCCGCCGTGCCAGCACGACCCGCACGACGTTGAGCGCAGCAAGCG
CGCTGAGCGGCTGCCCGCCAGCCTGGAGGAGAGCATTGATCGCTTCCGCG
ACGCGGCCACGCGCGGCTGCGTGCGCGACGTGTTGCCGGACGAGCTGGTG
CACTCGCTGCTGGCGCTCAAGCTGCACCAAGTGCAGTGCGTCAAGCGCCA
CGGACTGGACGCGCTGCTCAAGCGGCTGCTGACGCTGCACTGA
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protein sequence of Ggra10444.t1

>Ggra10444.t1 ID=Ggra10444.t1|Name=Ggra10444.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MAANGERGGDDDDGGDGGGGGGGGGGVVAPRAAPMQAVRLLRIVLVDYSA
IRRTKLVPYCARSRGAPNALFVKGGLLLTAEGSLPPHAPLSAVGEVYMLR
YSPYTHAAPPHHSAPQLPAPRVIAWPTHANHSLCVAHLHERNGQPWLFCP
RQRLCRAVQLLAAHDLTMLAGFEMEFVLLRGHPSDARSLEPFGTAGGYAL
HSQVDAAARVLDHMVAALAHARIGVSMVHAESAAGQFEIVLQHKPLLTAV
DELVMAREIVRAVACSHSLYATFLPKYGDAGSGAHVHFSLAGHFGGSAKL
YEQHVGMTPLAQQFVAGVLEALPWLGFLTNASCASYARLQPQRWVGVYKV
WGIANKEAPLRLALDRSNVELKTLDALSNPYLAMAGVVAAGLNGVRASMQ
LPPPCQHDPHDVERSKRAERLPASLEESIDRFRDAATRGCVRDVLPDELV
HSLLALKLHQVQCVKRHGLDALLKRLLTLH*
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mRNA from alignment at tig00000108_pilon:325461..326903+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10444.t1 ID=Ggra10444.t1|Name=Ggra10444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000108_pilon:325461..326903+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCAACGGCGAGCGCGGTGGCGACGATGATGAcggcggcgacgg
cggcggcggcggcggcggcggcggcggcgTGGTGGCGCCGCGCGCCGCGC
CCATGCAGGCCGTGCGGCTGCTGCGCATCGTGCTGGTGGACTACAGCGCC
ATCCGCCGCACCAAGCTGGTGCCGTACTgcgcgcgctcgcgcggcgcgcc
caacgcgcTCTTCGTCAAGGGCGGGCTGCTACTCACGGCGGAGGGTTCGC
TGCCGCCGCACGCGCCGCTAAGCGCGGTGGGCGAGGTGTACATGCTGCGC
TACTCGCCGTACACGCACGcggcgccgccgcaccacagcgcgccgcagct
gccggcgccgcGCGTGATTGCGTGGCCCACGCACGCCAACCACAGCCTTT
GCGTGGCGCACCTGCACGAGCGCAACGGCCAGCCGTGGCTGTTCTGCCCG
CGCCAGCGGCTGTGTCGCGCCGTGCAGCTGCTGGCCGCGCACGACCTCAC
CATGCTGGCGGGCTTCGAGATGGAGTTTGTGCTGCTGCGCGGCCACCCGA
GTGACGCGCGTTCGCTCGAGCCGTTCGGCACGGCGGGCGGCTACGCGCTG
CACTCGCAGGTGGATGCGGCGGCGCGCGTGCTGGATCACATGGTGGCGGC
GCTGGCGCACGCGCGCATCGGCGTGAGCATGGTGCACGCCGAGTCGGCGG
CGGGCCAGTTCGAAATCGTTCTGCAGCACAAGCCGCTGCTCACGGCGGTG
GACGAATTGGTGATGGCGCGCGAAATCGTGCGCGCCGTAGCCTGCAGCCA
CTCATTGTACGCCACCTTCTTGCCCAAGTACGGCGACGCCGGCAGTGGCG
CGCATGTGCATTTCAGTCTAGCTGGCCACTTTGGAGGCAGCGCAAAGCTG
TACGAGCAGCATGTGGGCATGACGCCGCTGGCGCAGCAGTTTGTGGCCGG
CGTGCTGGAGGCGCTGCCGTGGCTGGGCTTTCTGACCAATGCGAGCTGCG
CCAGTTACGCGCGGCTGCAGCCGCAGCGTTGGGTGGGCGTGTACAAGGTG
TGGGGCATTGCGAACAAGGAGGCGCCGCTACGACTGGCACTGGACCGCTC
AAACGTGGAACTCAAGACGCTTGACGCGCTGTCCAACCCGTACCTGGCCA
TGGCGGGCGTGGTGGCGGCGGGGCTCAACGGCGTGCGCGCAAGCATGCAG
CTGCCGCCGCCGTGCCAGCACGACCCGCACGACGTTGAGCGCAGCAAGCG
CGCTGAGCGGCTGCCCGCCAGCCTGGAGGAGAGCATTGATCGCTTCCGCG
ACGCGGCCACGCGCGGCTGCGTGCGCGACGTGTTGCCGGACGAGCTGGTG
CACTCGCTGCTGGCGCTCAAGCTGCACCAAGTGCAGTGCGTCAAGCGCCA
CGGACTGGACGCGCTGCTCAAGCGGCTGCTGACGCTGCACTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:325461..326903+

>Ggra10444.t1 ID=Ggra10444.t1|Name=Ggra10444.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000108_pilon:325461..326903+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCAACGGCGAGCGCGGTGGCGACGATGATGAcggcggcgacgg
cggcggcggcggcggcggcggcggcggcgTGGTGGCGCCGCGCGCCGCGC
CCATGCAGGCCGTGCGGCTGCTGCGCATCGTGCTGGTGGACTACAGCGCC
ATCCGCCGCACCAAGCTGGTGCCGTACTgcgcgcgctcgcgcggcgcgcc
caacgcgcTCTTCGTCAAGGGCGGGCTGCTACTCACGGCGGAGGGTTCGC
TGCCGCCGCACGCGCCGCTAAGCGCGGTGGGCGAGGTGTACATGCTGCGC
TACTCGCCGTACACGCACGcggcgccgccgcaccacagcgcgccgcagct
gccggcgccgcGCGTGATTGCGTGGCCCACGCACGCCAACCACAGCCTTT
GCGTGGCGCACCTGCACGAGCGCAACGGCCAGCCGTGGCTGTTCTGCCCG
CGCCAGCGGCTGTGTCGCGCCGTGCAGCTGCTGGCCGCGCACGACCTCAC
CATGCTGGCGGGCTTCGAGATGGAGTTTGTGCTGCTGCGCGGCCACCCGA
GTGACGCGCGTTCGCTCGAGCCGTTCGGCACGGCGGGCGGCTACGCGCTG
CACTCGCAGGTGGATGCGGCGGCGCGCGTGCTGGATCACATGGTGGCGGC
GCTGGCGCACGCGCGCATCGGCGTGAGCATGGTGCACGCCGAGTCGGCGG
CGGGCCAGTTCGAAATCGTTCTGCAGCACAAGCCGCTGCTCACGGCGGTG
GACGAATTGGTGATGGCGCGCGAAATCGTGCGCGCCGTAGCCTGCAGCCA
CTCATTGTACGCCACCTTCTTGCCCAAGTACGGCGACGCCGGCAGTGGCG
CGCATGTGCATTTCAGTCTAGCTGGCCACTTTGGAGGCAGCGCAAAGCTG
TACGAGCAGCATGTGGGCATGACGCCGCTGGCGCAGCAGTTTGTGGCCGG
CGTGCTGGAGGCGCTGCCGTGGCTGGGCTTTCTGACCAATGCGAGCTGCG
CCAGTTACGCGCGGCTGCAGCCGCAGCGTTGGGTGGGCGTGTACAAGGTG
TGGGGCATTGCGAACAAGGAGGCGCCGCTACGACTGGCACTGGACCGCTC
AAACGTGGAACTCAAGACGCTTGACGCGCTGTCCAACCCGTACCTGGCCA
TGGCGGGCGTGGTGGCGGCGGGGCTCAACGGCGTGCGCGCAAGCATGCAG
CTGCCGCCGCCGTGCCAGCACGACCCGCACGACGTTGAGCGCAGCAAGCG
CGCTGAGCGGCTGCCCGCCAGCCTGGAGGAGAGCATTGATCGCTTCCGCG
ACGCGGCCACGCGCGGCTGCGTGCGCGACGTGTTGCCGGACGAGCTGGTG
CACTCGCTGCTGGCGCTCAAGCTGCACCAAGTGCAGTGCGTCAAGCGCCA
CGGACTGGACGCGCTGCTCAAGCGGCTGCTGACGCTGCACTGA
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