Ggra10384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10384.t1
Unique NameGgra10384.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:174892..176449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_00444T0
Preferred nameFOL1
PFAMsFolB,HPPK,Pterin_bind
Max annot lvl4751|Fungi
KEGG rclassRC00002,RC00017,RC00121,RC00721,RC00842,RC00943
KEGG koko:K13939,ko:K13941
KEGG ReactionR03066,R03067,R03503,R03504
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00840
GOsGO:0003674,GO:0003824,GO:0003848,GO:0004150,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016772,GO:0016778,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019752,GO:0031967,GO:0031975,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue9.9e-109
EggNOG OGsCOG0294@1|root,KOG2544@2759|Eukaryota,38FVT@33154|Opisthokonta,3NUR7@4751|Fungi
EC2.5.1.15,2.7.6.3,4.1.2.25
Descriptionfolic acid synthesis protein
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10384Ggra10384Gracilaria gracilis GNS1m malegenetig00000108_pilon 174892..176449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10384.t1Ggra10384.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 174892..176449 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10384.t1.stop1Ggra10384.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 174892..174894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10384.t1.CDS1Ggra10384.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 174892..175605 -
Ggra10384.t1.CDS2Ggra10384.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 175697..176231 -
Ggra10384.t1.CDS3Ggra10384.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000108_pilon 176301..176449 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10384.t1.exon1Ggra10384.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 174892..175605 -
Ggra10384.t1.exon2Ggra10384.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 175697..176231 -
Ggra10384.t1.exon3Ggra10384.t1.exon3Gracilaria gracilis GNS1m maleexontig00000108_pilon 176301..176449 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10384.t1.intron1Ggra10384.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 175606..175696 -
Ggra10384.t1.intron2Ggra10384.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000108_pilon 176232..176300 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10384.t1.start1Ggra10384.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 176447..176449 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10384.t1 ID=Ggra10384.t1|Name=Ggra10384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=466bp
MFTASAAETVMIAVGSNVGNRANTIDAALRAMESDSCKVQQTSFLYESSP
MYVTEQAAFLNGAVQLSTRLPPRQLLHKLKDIERNLGRSAGGVRYGPRAI
DLDIICYGDERRVRDGDTLTIPHPRVHEREFVLQPLCDICEHTRIPLEHE
TKTAKQLLQQLLAGGKSELTKVTPTHSGRLLRWGERTLLMGVINATPDSF
SDGGQHNSIDSALRQVQKFCEQGFDIVDVGGQSTRPGAQLVGGSEEMRRI
APIIGAIHERFPDMLISCDTFVSDVGEHALDAGAQLINDISGGTLDGTLH
STLARRRAACVQMHTRGTPATMRSLQQYGDDVTAEVARELSRRIDGALRS
GVRRWSVIADCGIGFAKAAPHSVQLMRQTRRFQALVGGYPTLLGASRKAW
LCAAADGGGGGAAATAAATTTAARDWATAGAVGAAVGRGGVDAVRVHEAA
VASAVRAADVIGRGG*
back to top

spliced messenger RNA

>Ggra10384.t1 ID=Ggra10384.t1|Name=Ggra10384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000108_pilon:174892..176449- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACCGCCAGCGCGGCGGAGACGGTGATGATAGCCGTGGGTTCCAA
CGTCGGCAACAGAGCCAACACGATCGACGCCGCGCTACGAGCAATGGAAA
GCGACAGTTGCAAAGTGCAGCAAACGTCCTTTCTCTACGAGAGCAGTCCA
ATGTATGTGACGGAGCAAGCAGCTTTCCTCAACGGCGCCGTGCAGCTGAG
CACGCGTCTACCGCCGCGACAACTGCTGCACAAGCTGAAGGACATCGAGC
GCAACCTGGGTCGCAGCGCAGGCGGCGTGCGCTACGGGCCGCGTGCAATC
GACCTGGACATCATCTGTTATGGCGATGAGCGACGCGTTCGCGACGGAGA
CACACTGACGATCCCCCATCCGCGAGTGCACGAACGCGAGTTTGTTCTTC
AGCCGCTGTGCGACATTTGCGAACACACGCGCATCCCGCTGGAGCACGAG
ACGAAGACGGCGAAGCAGCTGCTGCAGCAGCTGCTGGCGGGCGGCAAGAG
CGAGCTGACAAAAGTGACGCCCACGCACAGCGGAAGGCTGCTGCGGTGGG
GCGAGCGAACGCTGTTGATGGGCGTCATCAACGCCACTCCCGACAGCTTT
AGCGACGGCGGACAGCACAACAGCATCGACAGCGCGCTGCGGCAGGTGCA
AAAGTTTTGCGAACAAGGGTTTGACATTGTGGACGTGGGCGGACAGAGCA
CCAGACCCGGCGCACAGCTGGTAGGCGGCAGCGAAGAAATGCGGCGCATC
GCACCCATCATCGGCGCCATCCACGAGCGCTTCCCCGACATGCTCATCTC
GTGCGACACATTCGTATCCGACGTGGGCGAGCACGCGCTGGACGCGGGCG
CGCAGCTGATCAACGACATATCCGGCGGCACGCTAGACGGCACGCTGCAC
AGCACGCTGGCGCGGCGGCGCGCGGCGTGCGTGCAGATGCACACGCGCGG
CACGCCGGCCACCATGCGCTCGCTGCAGCAGTACGGCGACGACGTGACGG
CGGAGGTGGCGCGCGAGCTGTCGCGCCGCATCGACGGCGCGCTGCGGAGC
GGCGTGCGGCGCTGGAGCGTGATCGCCGACTGCGGCATCGGCTTTGCCAA
GGCGGCGCCGCACAGCGTGCAGCTGATGCGCCAGACGCGGCGCTTCCAGG
CGCTTGTGGGCGGCTATCCCACGCTGCTGGGCGCCAGCCGCAAGGCGTGG
CTGTGCGCGGCGGCGGACGGCGGCGGCGGCGGTGCGGCGGCGACGGCGGC
AGCGACGACGACGGCGGCGCGCGACTGGGCGACGGCGGGCGCGGTGGGCG
CGGCGGTGGGGCGCGGCGGCGTGGACGCGGTGCGCGTGCACGAGGCGGCG
GTGGCGAGCGCGGTGCGCGCGGCGGACGTCATTGGTCGCGGCGGCTGA
back to top

protein sequence of Ggra10384.t1

>Ggra10384.t1 ID=Ggra10384.t1|Name=Ggra10384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=466bp
MFTASAAETVMIAVGSNVGNRANTIDAALRAMESDSCKVQQTSFLYESSP
MYVTEQAAFLNGAVQLSTRLPPRQLLHKLKDIERNLGRSAGGVRYGPRAI
DLDIICYGDERRVRDGDTLTIPHPRVHEREFVLQPLCDICEHTRIPLEHE
TKTAKQLLQQLLAGGKSELTKVTPTHSGRLLRWGERTLLMGVINATPDSF
SDGGQHNSIDSALRQVQKFCEQGFDIVDVGGQSTRPGAQLVGGSEEMRRI
APIIGAIHERFPDMLISCDTFVSDVGEHALDAGAQLINDISGGTLDGTLH
STLARRRAACVQMHTRGTPATMRSLQQYGDDVTAEVARELSRRIDGALRS
GVRRWSVIADCGIGFAKAAPHSVQLMRQTRRFQALVGGYPTLLGASRKAW
LCAAADGGGGGAAATAAATTTAARDWATAGAVGAAVGRGGVDAVRVHEAA
VASAVRAADVIGRGG*
back to top

mRNA from alignment at tig00000108_pilon:174892..176449-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10384.t1 ID=Ggra10384.t1|Name=Ggra10384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1558bp|location=Sequence derived from alignment at tig00000108_pilon:174892..176449- (Gracilaria gracilis GNS1m male)
ATGTTCACCGCCAGCGCGGCGGAGACGGTGATGATAGCCGTGGGTTCCAA
CGTCGGCAACAGAGCCAACACGATCGACGCCGCGCTACGAGCAATGGAAA
GCGACAGTTGCAAAGTGCAGCAAACGTCCTTTCTCTACGAGAGCAGTCCG
TAAGTGCGCCAGTACGACGCTTTGCACGCGACTTGCTATCGCAACAGCTT
TTGATTAACTGATTGCAGAATGTATGTGACGGAGCAAGCAGCTTTCCTCA
ACGGCGCCGTGCAGCTGAGCACGCGTCTACCGCCGCGACAACTGCTGCAC
AAGCTGAAGGACATCGAGCGCAACCTGGGTCGCAGCGCAGGCGGCGTGCG
CTACGGGCCGCGTGCAATCGACCTGGACATCATCTGTTATGGCGATGAGC
GACGCGTTCGCGACGGAGACACACTGACGATCCCCCATCCGCGAGTGCAC
GAACGCGAGTTTGTTCTTCAGCCGCTGTGCGACATTTGCGAACACACGCG
CATCCCGCTGGAGCACGAGACGAAGACGGCGAAGCAGCTGCTGCAGCAGC
TGCTGGCGGGCGGCAAGAGCGAGCTGACAAAAGTGACGCCCACGCACAGC
GGAAGGCTGCTGCGGTGGGGCGAGCGAACGCTGTTGATGGGCGTCATCAA
CGCCACTCCCGACAGCTTTAGCGACGGCGGACAGCACAACAGCATCGACA
GCGCGCTGCGGCAGGTGCAAAAGTTTTGCGAACAAGGGTTTGACATTGTG
GACGTAAGTGACAAGATGAAACAAGTATAACACGATTGAACACAGCAACG
CAGTCTCTAACTAACCAACGCACCGGCACACACACACACCGCAGGTGGGC
GGACAGAGCACCAGACCCGGCGCACAGCTGGTAGGCGGCAGCGAAGAAAT
GCGGCGCATCGCACCCATCATCGGCGCCATCCACGAGCGCTTCCCCGACA
TGCTCATCTCGTGCGACACATTCGTATCCGACGTGGGCGAGCACGCGCTG
GACGCGGGCGCGCAGCTGATCAACGACATATCCGGCGGCACGCTAGACGG
CACGCTGCACAGCACGCTGGCGCGGCGGCGCGCGGCGTGCGTGCAGATGC
ACACGCGCGGCACGCCGGCCACCATGCGCTCGCTGCAGCAGTACGGCGAC
GACGTGACGGCGGAGGTGGCGCGCGAGCTGTCGCGCCGCATCGACGGCGC
GCTGCGGAGCGGCGTGCGGCGCTGGAGCGTGATCGCCGACTGCGGCATCG
GCTTTGCCAAGGCGGCGCCGCACAGCGTGCAGCTGATGCGCCAGACGCGG
CGCTTCCAGGCGCTTGTGGGCGGCTATCCCACGCTGCTGGGCGCCAGCCG
CAAGGCGTGGCTGTGCGCGGCGGCGGACGGCGGCGGCGGCGGTGCGGCGG
CGACGGCGGCAGCGACGACGACGGCGGCGCGCGACTGGGCGACGGCGGGC
GCGGTGGGCGCGGCGGTGGGGCGCGGCGGCGTGGACGCGGTGCGCGTGCA
CGAGGCGGCGGTGGCGAGCGCGGTGCGCGCGGCGGACGTCATTGGTCGCG
GCGGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000108_pilon:174892..176449-

>Ggra10384.t1 ID=Ggra10384.t1|Name=Ggra10384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00000108_pilon:174892..176449- (Gracilaria gracilis GNS1m male)
ATGTTCACCGCCAGCGCGGCGGAGACGGTGATGATAGCCGTGGGTTCCAA
CGTCGGCAACAGAGCCAACACGATCGACGCCGCGCTACGAGCAATGGAAA
GCGACAGTTGCAAAGTGCAGCAAACGTCCTTTCTCTACGAGAGCAGTCCA
ATGTATGTGACGGAGCAAGCAGCTTTCCTCAACGGCGCCGTGCAGCTGAG
CACGCGTCTACCGCCGCGACAACTGCTGCACAAGCTGAAGGACATCGAGC
GCAACCTGGGTCGCAGCGCAGGCGGCGTGCGCTACGGGCCGCGTGCAATC
GACCTGGACATCATCTGTTATGGCGATGAGCGACGCGTTCGCGACGGAGA
CACACTGACGATCCCCCATCCGCGAGTGCACGAACGCGAGTTTGTTCTTC
AGCCGCTGTGCGACATTTGCGAACACACGCGCATCCCGCTGGAGCACGAG
ACGAAGACGGCGAAGCAGCTGCTGCAGCAGCTGCTGGCGGGCGGCAAGAG
CGAGCTGACAAAAGTGACGCCCACGCACAGCGGAAGGCTGCTGCGGTGGG
GCGAGCGAACGCTGTTGATGGGCGTCATCAACGCCACTCCCGACAGCTTT
AGCGACGGCGGACAGCACAACAGCATCGACAGCGCGCTGCGGCAGGTGCA
AAAGTTTTGCGAACAAGGGTTTGACATTGTGGACGTGGGCGGACAGAGCA
CCAGACCCGGCGCACAGCTGGTAGGCGGCAGCGAAGAAATGCGGCGCATC
GCACCCATCATCGGCGCCATCCACGAGCGCTTCCCCGACATGCTCATCTC
GTGCGACACATTCGTATCCGACGTGGGCGAGCACGCGCTGGACGCGGGCG
CGCAGCTGATCAACGACATATCCGGCGGCACGCTAGACGGCACGCTGCAC
AGCACGCTGGCGCGGCGGCGCGCGGCGTGCGTGCAGATGCACACGCGCGG
CACGCCGGCCACCATGCGCTCGCTGCAGCAGTACGGCGACGACGTGACGG
CGGAGGTGGCGCGCGAGCTGTCGCGCCGCATCGACGGCGCGCTGCGGAGC
GGCGTGCGGCGCTGGAGCGTGATCGCCGACTGCGGCATCGGCTTTGCCAA
GGCGGCGCCGCACAGCGTGCAGCTGATGCGCCAGACGCGGCGCTTCCAGG
CGCTTGTGGGCGGCTATCCCACGCTGCTGGGCGCCAGCCGCAAGGCGTGG
CTGTGCGCGGCGGCGGACGGCGGCGGCGGCGGTGCGGCGGCGACGGCGGC
AGCGACGACGACGGCGGCGCGCGACTGGGCGACGGCGGGCGCGGTGGGCG
CGGCGGTGGGGCGCGGCGGCGTGGACGCGGTGCGCGTGCACGAGGCGGCG
GTGGCGAGCGCGGTGCGCGCGGCGGACGTCATTGGTCGCGGCGGCTGA
back to top