Ggra10382.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10382.t1
Unique NameGgra10382.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:172003..173565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LHP4
Preferred nameMGD1
PFAMsGlyco_tran_28_C,MGDG_synth
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K03715
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,map00561,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006664,GO:0006950,GO:0006996,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009526,GO:0009527,GO:0009528,GO:0009536,GO:0009605,GO:0009657,GO:0009668,GO:0009706,GO:0009707,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0009991,GO:0010027,GO:0010154,GO:0016020,GO:0016036,GO:0016043,GO:0016740,GO:0016757,GO:0016758,GO:0019374,GO:0019752,GO:0019866,GO:0019867,GO:0022414,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0035250,GO:0042170,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046509,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061024,GO:0061458,GO:0071496,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Evalue1.92e-98
EggNOG OGsCOG0707@1|root,2QPXV@2759|Eukaryota
EC2.4.1.46
Description1,2-diacylglycerol 3-beta-galactosyltransferase activity
COG categoryM
CAZyGT28
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10382Ggra10382Gracilaria gracilis GNS1m malegenetig00000108_pilon 172003..173565 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10382.t1.start1Ggra10382.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 172003..172005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10382.t1.CDS1Ggra10382.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 172003..173565 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10382.t1.exon1Ggra10382.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 172003..173565 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10382.t1.stop1Ggra10382.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 173563..173565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10382.t1Ggra10382.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 172003..173565 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10382.t1 ID=Ggra10382.t1|Name=Ggra10382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MESSSTADGTMDSAAPSTAAAAPALAHAQQLLSESRKLRVLLLSSDTGGG
HRASAAALQAALQRLYGARVQVAVVDFWVQLARGPFRHFPAQYAFLARHP
RLWKLTYELTRLAPLRALTEAYFNALAHRNVRAAFERFQPDLVLSVHPLV
NTLALHVLDALAADTHVPRPPYVTVVTDLGGAHPTWFNRRADMTFVPIAA
VAHLAQRAGLPDHKLHTVGLPVREQFWSAHREPKPQLRQRLRMLPHARAV
LLVGGGDGVGGLHAVATTLARELPRAMRTSEHTSEQQVQLVVVCGNNSAL
RDKLQSRRFACHVTCLGYVSNMSEWMAACDLICTKAGPGTIAEALIRALP
IIVTSFLPGQEEANVRYVTQQRVGVYARRPQRIAAIAAEWLSQPQLLADM
SRRALQCATPHATLRLAEHIVRVARDRTAANVLEMQRRRQLRQLRKYTYL
PHVPVLREDSAEWHVWVRVKLLLRVVTGALIVRRAATVAAAVHDSDNHHH
QHGTRAQIADGGEGDAEAEL*
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spliced messenger RNA

>Ggra10382.t1 ID=Ggra10382.t1|Name=Ggra10382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000108_pilon:172003..173565+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGCAGCAGCACCGCCGACGGCACGATGGACAGCGCCGCGCCGTC
AACGGCAGCGGCGGCGCCAGCGCTGGCGCACGCGCAGCAGCTGCTGAGCG
AGTCGCGCAAACTGCGCGTGCTGCTGCTGTCGTCCGACACGggcggcggg
caccgcgcgtcggcggcggcgctgcaggcggcgctgcagcggctgtacgg
cgcgcgcgtgcaggtggcggtggtggACTTTTGGGTGCAGTTGGCGCGCG
GGCCGTTCCGCCACTTTCCGGCGCAGTACGCGTTCCTGGCGCGCCACCCG
CGCCTGTGGAAGCTCACGTACGAGCTCACGCGTTTGGCGCCGCTGCGCGC
GCTCACCGAGGCGTACTTCAACGCGCTGGCGCACCGCAACGTGCGCGCCG
CCTTTGAGCGCTTCCAGCCGGACCTGGTGCTCTCCGTGCACCCGCTGGTC
AACACGCTGGCGCTGCACGTGCTGGACGCGCTGGCCGCCGACACGCACGT
GCCGCGCCCGCCGTACGTCACCGTCGTCACCGACCTGGGCGGCGCGCACC
CGACCTGGTTCAACCGCCGCGCCGACATGACGTTTGTGCCCATCGCCGCC
GTGGCGCACCTGGCGCAGCGCGCCGGCCTGCCCGACCACAAGCTGCACAC
CGTCGGCCTGCCCGTGCGCGAGCAGTTTTGGAGCGCCCATCGCGAGCCAA
AGCCGCAGCTGCGCCAGCGCCTGCGCATGCTGCCGCACGCGCGTGCCGTG
CTGCTGGTGggcggcggcgacggcgtgggcggcCTGCACGCCGTGGCCAC
CACGCTGGCGCGCGAGCTGCCGCGCGCCATGCGCACCTCCGAGCACACCT
CCGAGCAACAAGTGCAGCTGGTGGTGGTGTGCGGTAACAACAGCGCGCTG
CGCGACAAGCTGCAGTCGCGCCGCTTCGCGTGCCACGTCACCTGCCTGGG
CTACGTCTCCAACATGAGCGAGTGGATGGCGGCGTGCGACCTCATCTGCA
CCAAGGCCGGCCCGGGCACCATTGCCGAGGCGCTCATCCGCGCGCTGCCC
ATCATCGTCACCTCCTTTCTGCCGGGGCAGGAGGAGGCCAACGTGCGCTA
CGTCACGCAGCAGCGCGTGGGCGTGTACGCGCGCCGCCCGCAGCGCATCG
CCGCCATTGCGGCCGAGTGGCTGTCGCAGCCGCAGCTGCTGGCCGACATG
TCGCGCCGCGCGCTGCAGTGcgccacgccgcacgccacgctgcgcctcgc
cGAACATATTGTGCGCGTGGCGCGCGACCGCACCGCCGCCAACGTGCTGG
AGATGCAGCGCCGCCGACAGCTGCGCCAGCTGCGCAAGTACACCTACCTG
CCGCACGTGCCCGTGCTCCGCGAGGACAGCGCAGAGTGGCATGTGTGGGT
GCGCGTCAAGTTGTTGCTACGCGTGGTGACTGGCGCGCTCATTGTGCGCC
GCGCAGCCACCGTTGCCGCCGCCGTGCACGACAGCGACAACCACCACCAC
CAGCACGGCACGCGCGCGCAGATCGCCGACGGCGGCGAGGGGGATGCCGA
GGCGGAGCTGTGA
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protein sequence of Ggra10382.t1

>Ggra10382.t1 ID=Ggra10382.t1|Name=Ggra10382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MESSSTADGTMDSAAPSTAAAAPALAHAQQLLSESRKLRVLLLSSDTGGG
HRASAAALQAALQRLYGARVQVAVVDFWVQLARGPFRHFPAQYAFLARHP
RLWKLTYELTRLAPLRALTEAYFNALAHRNVRAAFERFQPDLVLSVHPLV
NTLALHVLDALAADTHVPRPPYVTVVTDLGGAHPTWFNRRADMTFVPIAA
VAHLAQRAGLPDHKLHTVGLPVREQFWSAHREPKPQLRQRLRMLPHARAV
LLVGGGDGVGGLHAVATTLARELPRAMRTSEHTSEQQVQLVVVCGNNSAL
RDKLQSRRFACHVTCLGYVSNMSEWMAACDLICTKAGPGTIAEALIRALP
IIVTSFLPGQEEANVRYVTQQRVGVYARRPQRIAAIAAEWLSQPQLLADM
SRRALQCATPHATLRLAEHIVRVARDRTAANVLEMQRRRQLRQLRKYTYL
PHVPVLREDSAEWHVWVRVKLLLRVVTGALIVRRAATVAAAVHDSDNHHH
QHGTRAQIADGGEGDAEAEL*
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mRNA from alignment at tig00000108_pilon:172003..173565+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10382.t1 ID=Ggra10382.t1|Name=Ggra10382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000108_pilon:172003..173565+ (Gracilaria gracilis GNS1m male)
ATGGAAAGCAGCAGCACCGCCGACGGCACGATGGACAGCGCCGCGCCGTC
AACGGCAGCGGCGGCGCCAGCGCTGGCGCACGCGCAGCAGCTGCTGAGCG
AGTCGCGCAAACTGCGCGTGCTGCTGCTGTCGTCCGACACGggcggcggg
caccgcgcgtcggcggcggcgctgcaggcggcgctgcagcggctgtacgg
cgcgcgcgtgcaggtggcggtggtggACTTTTGGGTGCAGTTGGCGCGCG
GGCCGTTCCGCCACTTTCCGGCGCAGTACGCGTTCCTGGCGCGCCACCCG
CGCCTGTGGAAGCTCACGTACGAGCTCACGCGTTTGGCGCCGCTGCGCGC
GCTCACCGAGGCGTACTTCAACGCGCTGGCGCACCGCAACGTGCGCGCCG
CCTTTGAGCGCTTCCAGCCGGACCTGGTGCTCTCCGTGCACCCGCTGGTC
AACACGCTGGCGCTGCACGTGCTGGACGCGCTGGCCGCCGACACGCACGT
GCCGCGCCCGCCGTACGTCACCGTCGTCACCGACCTGGGCGGCGCGCACC
CGACCTGGTTCAACCGCCGCGCCGACATGACGTTTGTGCCCATCGCCGCC
GTGGCGCACCTGGCGCAGCGCGCCGGCCTGCCCGACCACAAGCTGCACAC
CGTCGGCCTGCCCGTGCGCGAGCAGTTTTGGAGCGCCCATCGCGAGCCAA
AGCCGCAGCTGCGCCAGCGCCTGCGCATGCTGCCGCACGCGCGTGCCGTG
CTGCTGGTGggcggcggcgacggcgtgggcggcCTGCACGCCGTGGCCAC
CACGCTGGCGCGCGAGCTGCCGCGCGCCATGCGCACCTCCGAGCACACCT
CCGAGCAACAAGTGCAGCTGGTGGTGGTGTGCGGTAACAACAGCGCGCTG
CGCGACAAGCTGCAGTCGCGCCGCTTCGCGTGCCACGTCACCTGCCTGGG
CTACGTCTCCAACATGAGCGAGTGGATGGCGGCGTGCGACCTCATCTGCA
CCAAGGCCGGCCCGGGCACCATTGCCGAGGCGCTCATCCGCGCGCTGCCC
ATCATCGTCACCTCCTTTCTGCCGGGGCAGGAGGAGGCCAACGTGCGCTA
CGTCACGCAGCAGCGCGTGGGCGTGTACGCGCGCCGCCCGCAGCGCATCG
CCGCCATTGCGGCCGAGTGGCTGTCGCAGCCGCAGCTGCTGGCCGACATG
TCGCGCCGCGCGCTGCAGTGcgccacgccgcacgccacgctgcgcctcgc
cGAACATATTGTGCGCGTGGCGCGCGACCGCACCGCCGCCAACGTGCTGG
AGATGCAGCGCCGCCGACAGCTGCGCCAGCTGCGCAAGTACACCTACCTG
CCGCACGTGCCCGTGCTCCGCGAGGACAGCGCAGAGTGGCATGTGTGGGT
GCGCGTCAAGTTGTTGCTACGCGTGGTGACTGGCGCGCTCATTGTGCGCC
GCGCAGCCACCGTTGCCGCCGCCGTGCACGACAGCGACAACCACCACCAC
CAGCACGGCACGCGCGCGCAGATCGCCGACGGCGGCGAGGGGGATGCCGA
GGCGGAGCTGTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:172003..173565+

>Ggra10382.t1 ID=Ggra10382.t1|Name=Ggra10382.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000108_pilon:172003..173565+ (Gracilaria gracilis GNS1m male)
ATGGAAAGCAGCAGCACCGCCGACGGCACGATGGACAGCGCCGCGCCGTC
AACGGCAGCGGCGGCGCCAGCGCTGGCGCACGCGCAGCAGCTGCTGAGCG
AGTCGCGCAAACTGCGCGTGCTGCTGCTGTCGTCCGACACGggcggcggg
caccgcgcgtcggcggcggcgctgcaggcggcgctgcagcggctgtacgg
cgcgcgcgtgcaggtggcggtggtggACTTTTGGGTGCAGTTGGCGCGCG
GGCCGTTCCGCCACTTTCCGGCGCAGTACGCGTTCCTGGCGCGCCACCCG
CGCCTGTGGAAGCTCACGTACGAGCTCACGCGTTTGGCGCCGCTGCGCGC
GCTCACCGAGGCGTACTTCAACGCGCTGGCGCACCGCAACGTGCGCGCCG
CCTTTGAGCGCTTCCAGCCGGACCTGGTGCTCTCCGTGCACCCGCTGGTC
AACACGCTGGCGCTGCACGTGCTGGACGCGCTGGCCGCCGACACGCACGT
GCCGCGCCCGCCGTACGTCACCGTCGTCACCGACCTGGGCGGCGCGCACC
CGACCTGGTTCAACCGCCGCGCCGACATGACGTTTGTGCCCATCGCCGCC
GTGGCGCACCTGGCGCAGCGCGCCGGCCTGCCCGACCACAAGCTGCACAC
CGTCGGCCTGCCCGTGCGCGAGCAGTTTTGGAGCGCCCATCGCGAGCCAA
AGCCGCAGCTGCGCCAGCGCCTGCGCATGCTGCCGCACGCGCGTGCCGTG
CTGCTGGTGggcggcggcgacggcgtgggcggcCTGCACGCCGTGGCCAC
CACGCTGGCGCGCGAGCTGCCGCGCGCCATGCGCACCTCCGAGCACACCT
CCGAGCAACAAGTGCAGCTGGTGGTGGTGTGCGGTAACAACAGCGCGCTG
CGCGACAAGCTGCAGTCGCGCCGCTTCGCGTGCCACGTCACCTGCCTGGG
CTACGTCTCCAACATGAGCGAGTGGATGGCGGCGTGCGACCTCATCTGCA
CCAAGGCCGGCCCGGGCACCATTGCCGAGGCGCTCATCCGCGCGCTGCCC
ATCATCGTCACCTCCTTTCTGCCGGGGCAGGAGGAGGCCAACGTGCGCTA
CGTCACGCAGCAGCGCGTGGGCGTGTACGCGCGCCGCCCGCAGCGCATCG
CCGCCATTGCGGCCGAGTGGCTGTCGCAGCCGCAGCTGCTGGCCGACATG
TCGCGCCGCGCGCTGCAGTGcgccacgccgcacgccacgctgcgcctcgc
cGAACATATTGTGCGCGTGGCGCGCGACCGCACCGCCGCCAACGTGCTGG
AGATGCAGCGCCGCCGACAGCTGCGCCAGCTGCGCAAGTACACCTACCTG
CCGCACGTGCCCGTGCTCCGCGAGGACAGCGCAGAGTGGCATGTGTGGGT
GCGCGTCAAGTTGTTGCTACGCGTGGTGACTGGCGCGCTCATTGTGCGCC
GCGCAGCCACCGTTGCCGCCGCCGTGCACGACAGCGACAACCACCACCAC
CAGCACGGCACGCGCGCGCAGATCGCCGACGGCGGCGAGGGGGATGCCGA
GGCGGAGCTGTGA
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