Ggra10445.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10445.t1
Unique NameGgra10445.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:327850..328896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10445Ggra10445Gracilaria gracilis GNS1m malegenetig00000108_pilon 327850..328896 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10445.t1.start1Ggra10445.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 327850..327852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10445.t1.CDS1Ggra10445.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 327850..328896 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10445.t1.exon1Ggra10445.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 327850..328896 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10445.t1.stop1Ggra10445.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 328894..328896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10445.t1Ggra10445.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 327850..328896 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10445.t1 ID=Ggra10445.t1|Name=Ggra10445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MASRSDALPQQQQQHHHHQQQQHQPPPPPTPPSLLLHAAPALVAQPQLYA
LLRQYADVEPSQHTAQLIKRVHADALEEYRITKKRKQQQLACKIVDAQCS
ADRLILKAEKKKVANHASAVASRVKQEFIVSSFERLLSDKIMDAFHLSDV
LYRNALLLAEKDHHIRRLSDKVAALSQQLDSLLPPPSLQPPSLQPPQPPP
PPPPHAHVHTFDALDVGANCAAADAISFSAAAGVELDELFARGALHEGAA
ATGDDDSSATCTVSSCGAHSAAGCGLNCGWACAAHQQQQPQQPQQPQHAT
VANGHSLLAVGKLSVGATRAHVPARQSALRHALLSDADARDVSLNPVA*
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spliced messenger RNA

>Ggra10445.t1 ID=Ggra10445.t1|Name=Ggra10445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000108_pilon:327850..328896+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCCGCTCCGacgcgctaccgcagcagcagcagcagcaccacca
ccaccagcaacagcagcaccagccgccgccgccaccgacgccgccgtcgc
tgctgctgcacgctgcgcccgcgttggtggcgcagccgcagctgtacgcg
ctgctgcgccagtacgccgacgtggagccttcgcagcaCACGGCGCAGCT
GATCAAGCGCGTGCACGCCGACGCGCTGGAGGAGTACCGCATCACCAAGA
AGAGGAAGCAGCAGCAGCTGGCGTGCAAGATTGTGGACGCGCAGTGCTCC
GCCGATCGCCTCATCCTCAAGGCTGAGAAGAAGAAGGTGGCCAATCACGC
CAGCGCCGTCGCCAGCCGCGTCAAACAGGAGTTCATCGTGTCGTCCTTCG
AACGACTGCTGTCCGATAAGATTATGGACGCCTTCCATCTGTCCGACGTG
CTGTACCGCAATGCGCTGCTGCTGGCCGAAAAAGACCACCACATCAGACG
GCTCAGCGATAAGGTTGCCGCGCTGTCGCAGCAGCTTGATAGCTTACTGc
cgccgccgtcgctgcagccgccgtcgctgcagccgccgcagccgccgccg
ccaccgccgccgcacgcacatgtgcacacgtttgacgctttggacgttgg
cgccaattgcgccgccgctgacgcCATATCGTTCAGCGCGGCGGCGGGCG
TGGAGCTGGACGAGCTGTTCGCGAGAGGCGCGCTGCACGAAGGCGCCGCC
GCCACGGGCGACGACGACAGCAGCGCCACCTGCACCGTCAGCAGCTGCGG
CGCCCACAGCGCCGCCGGCTGTGGCCTCAACTGTGGCTGGGCTTGTGCTG
cgcatcagcagcagcagccgcagcagccgcagcagccgcagcaCGCCACC
GTTGCGAATGGCCACTCGCTGCTGGCCGTGGGCAAGCTGAGCGTGGGCGC
CACGCGCGCCCATGTGCCCGCAAGGCAGAGCGCTCTGCGTCACGCGCTGC
TTTCGGACGCCGATGCGCGCGACGTGTCGCTCAACCCCGTGGCGTAG
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protein sequence of Ggra10445.t1

>Ggra10445.t1 ID=Ggra10445.t1|Name=Ggra10445.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MASRSDALPQQQQQHHHHQQQQHQPPPPPTPPSLLLHAAPALVAQPQLYA
LLRQYADVEPSQHTAQLIKRVHADALEEYRITKKRKQQQLACKIVDAQCS
ADRLILKAEKKKVANHASAVASRVKQEFIVSSFERLLSDKIMDAFHLSDV
LYRNALLLAEKDHHIRRLSDKVAALSQQLDSLLPPPSLQPPSLQPPQPPP
PPPPHAHVHTFDALDVGANCAAADAISFSAAAGVELDELFARGALHEGAA
ATGDDDSSATCTVSSCGAHSAAGCGLNCGWACAAHQQQQPQQPQQPQHAT
VANGHSLLAVGKLSVGATRAHVPARQSALRHALLSDADARDVSLNPVA*
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mRNA from alignment at tig00000108_pilon:327850..328896+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10445.t1 ID=Ggra10445.t1|Name=Ggra10445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000108_pilon:327850..328896+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCCGCTCCGacgcgctaccgcagcagcagcagcagcaccacca
ccaccagcaacagcagcaccagccgccgccgccaccgacgccgccgtcgc
tgctgctgcacgctgcgcccgcgttggtggcgcagccgcagctgtacgcg
ctgctgcgccagtacgccgacgtggagccttcgcagcaCACGGCGCAGCT
GATCAAGCGCGTGCACGCCGACGCGCTGGAGGAGTACCGCATCACCAAGA
AGAGGAAGCAGCAGCAGCTGGCGTGCAAGATTGTGGACGCGCAGTGCTCC
GCCGATCGCCTCATCCTCAAGGCTGAGAAGAAGAAGGTGGCCAATCACGC
CAGCGCCGTCGCCAGCCGCGTCAAACAGGAGTTCATCGTGTCGTCCTTCG
AACGACTGCTGTCCGATAAGATTATGGACGCCTTCCATCTGTCCGACGTG
CTGTACCGCAATGCGCTGCTGCTGGCCGAAAAAGACCACCACATCAGACG
GCTCAGCGATAAGGTTGCCGCGCTGTCGCAGCAGCTTGATAGCTTACTGc
cgccgccgtcgctgcagccgccgtcgctgcagccgccgcagccgccgccg
ccaccgccgccgcacgcacatgtgcacacgtttgacgctttggacgttgg
cgccaattgcgccgccgctgacgcCATATCGTTCAGCGCGGCGGCGGGCG
TGGAGCTGGACGAGCTGTTCGCGAGAGGCGCGCTGCACGAAGGCGCCGCC
GCCACGGGCGACGACGACAGCAGCGCCACCTGCACCGTCAGCAGCTGCGG
CGCCCACAGCGCCGCCGGCTGTGGCCTCAACTGTGGCTGGGCTTGTGCTG
cgcatcagcagcagcagccgcagcagccgcagcagccgcagcaCGCCACC
GTTGCGAATGGCCACTCGCTGCTGGCCGTGGGCAAGCTGAGCGTGGGCGC
CACGCGCGCCCATGTGCCCGCAAGGCAGAGCGCTCTGCGTCACGCGCTGC
TTTCGGACGCCGATGCGCGCGACGTGTCGCTCAACCCCGTGGCGTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:327850..328896+

>Ggra10445.t1 ID=Ggra10445.t1|Name=Ggra10445.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000108_pilon:327850..328896+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCCGCTCCGacgcgctaccgcagcagcagcagcagcaccacca
ccaccagcaacagcagcaccagccgccgccgccaccgacgccgccgtcgc
tgctgctgcacgctgcgcccgcgttggtggcgcagccgcagctgtacgcg
ctgctgcgccagtacgccgacgtggagccttcgcagcaCACGGCGCAGCT
GATCAAGCGCGTGCACGCCGACGCGCTGGAGGAGTACCGCATCACCAAGA
AGAGGAAGCAGCAGCAGCTGGCGTGCAAGATTGTGGACGCGCAGTGCTCC
GCCGATCGCCTCATCCTCAAGGCTGAGAAGAAGAAGGTGGCCAATCACGC
CAGCGCCGTCGCCAGCCGCGTCAAACAGGAGTTCATCGTGTCGTCCTTCG
AACGACTGCTGTCCGATAAGATTATGGACGCCTTCCATCTGTCCGACGTG
CTGTACCGCAATGCGCTGCTGCTGGCCGAAAAAGACCACCACATCAGACG
GCTCAGCGATAAGGTTGCCGCGCTGTCGCAGCAGCTTGATAGCTTACTGc
cgccgccgtcgctgcagccgccgtcgctgcagccgccgcagccgccgccg
ccaccgccgccgcacgcacatgtgcacacgtttgacgctttggacgttgg
cgccaattgcgccgccgctgacgcCATATCGTTCAGCGCGGCGGCGGGCG
TGGAGCTGGACGAGCTGTTCGCGAGAGGCGCGCTGCACGAAGGCGCCGCC
GCCACGGGCGACGACGACAGCAGCGCCACCTGCACCGTCAGCAGCTGCGG
CGCCCACAGCGCCGCCGGCTGTGGCCTCAACTGTGGCTGGGCTTGTGCTG
cgcatcagcagcagcagccgcagcagccgcagcagccgcagcaCGCCACC
GTTGCGAATGGCCACTCGCTGCTGGCCGTGGGCAAGCTGAGCGTGGGCGC
CACGCGCGCCCATGTGCCCGCAAGGCAGAGCGCTCTGCGTCACGCGCTGC
TTTCGGACGCCGATGCGCGCGACGTGTCGCTCAACCCCGTGGCGTAG
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