Ggra10431.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10431.t1
Unique Name	Ggra10431.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	369

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:298026..299132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	157072.XP_008862793.1
PFAMs	PDCD2_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14801
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue	1.25e-21
EggNOG OGs	KOG2061@1\|root,KOG2061@2759\|Eukaryota
Description	positive regulation of hematopoietic stem cell proliferation
COG category	O
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10431	Ggra10431	Gracilaria gracilis GNS1m male	gene	tig00000108_pilon 298026..299132 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10431.t1.start1	Ggra10431.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000108_pilon 298026..298028 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10431.t1.CDS1	Ggra10431.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000108_pilon 298026..299132 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10431.t1.exon1	Ggra10431.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000108_pilon 298026..299132 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10431.t1.stop1	Ggra10431.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000108_pilon 299130..299132 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10431.t1	Ggra10431.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000108_pilon 298026..299132 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000108_pilon:298026..299132+
coding sequence from alignment at tig00000108_pilon:298026..299132+

mRNA sequence

>Ggra10431.t1 ID=Ggra10431.t1|Name=Ggra10431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MSTSCILGFASSEWKAENGEWYDTHIGGVAVWPEHVHAWIPVCPLCQRDR
TLVLQAYAPHSVHPQRELYLYGCNSIQCSGQAESWYPVRVVKCAEMEKGV
DKSSASPAAPEEAQMSAKRESINWDSDSDLSSSSDSSADALVGELEELSL
ALKRTNIEEKTCLRKQVERKVTPAIGAGRKVSDEGGTQQCSTPLCSFYVE
VDNEPGAEQCDEDEKQVSRLLSKYKEEEKLRSKSGISEQWPAEPDEEDKP
EVVSLQKFNERIARAPEQILRYDLGGEPLWPRHPPAHTKTKTCECGAPMI
FELQLLASCIHYLKPENALPTEEKEAGMNFASVAIYTCANDCEEAKSVAG
NASFKGFEQEICVQRDDW*

spliced messenger RNA

>Ggra10431.t1 ID=Ggra10431.t1|Name=Ggra10431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000108_pilon:298026..299132+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACTAGTTGTATTCTAGGATTTGCTTCGTCGGAGTGGAAGGCAGA
AAATGGCGAATGGTATGATACCCACATTGGGGGTGTCGCCGTGTGGCCAG
AACATGTGCATGCATGGATTCCGGTATGCCCACTATGTCAGCGTGATCGG
ACTCTAGTGTTGCAGGCCTACGCCCCTCACTCTGTGCACCCGCAGAGGGA
ATTGTATTTGTACGGGTGTAACTCTATTCAGTGTTCAGGTCAAGCAGAAT
CATGGTACCCCGTTCGCGTTGTAAAGTGTGCTGAAATGGAAAAGGGTGTA
GATAAGAGCTCTGCTTCTCCCGCTGCTCCTGAAGAAGCTCAAATGTCAGC
AAAACGTGAGAGTATAAATTGGGATTCCGATTCAGATTTAAGCAGCTCAA
GTGACTCTAGCGCAGATGCTTTGGTTGGAGAATTGGAAGAACTCTCTTTA
GCATTAAAGCGGACTAACATAGAAGAGAAAACGTGCTTGAGAAAGCAGGT
AGAAAGAAAAGTAACGCCAGCCATAGGCGCCGGAAGAAAAGTAAGCGACG
AAGGGGGTACGCAGCAGTGCTCAACACCTCTGTGTTCGTTTTATGTGGAA
GTTGACAACGAGCCGGGTGCAGAACAGTGCGACGAAGATGAAAAACAGGT
CAGTCGTTTATTAAGCAAGTATAAAGAAGAAGAAAAGTTAAGAAGCAAAA
GCGGAATCAGTGAACAGTGGCCAGCTGAACCAGATGAAGAGGATAAGCCT
GAAGTGGTCTCCCTCCAGAAATTCAACGAAAGAATAGCAAGAGCTCCGGA
ACAGATCTTACGCTACGACCTTGGCGGGGAACCATTGTGGCCACGACATC
CGCCAGCGCATACGAAAACGAAAACGTGCGAATGTGGAGCACCCATGATC
TTCGAACTACAACTGCTTGCTTCTTGCATACACTATTTGAAACCCGAGAA
TGCGTTGCCGACAGAGGAAAAAGAAGCGGGCATGAATTTCGCTTCAGTCG
CAATATACACATGTGCCAATGACTGCGAAGAAGCGAAAAGCGTGGCCGGG
AACGCTTCGTTCAAGGGTTTTGAACAAGAGATCTGCGTGCAGCGAGACGA
TTGGTGA

protein sequence of Ggra10431.t1

>Ggra10431.t1 ID=Ggra10431.t1|Name=Ggra10431.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MSTSCILGFASSEWKAENGEWYDTHIGGVAVWPEHVHAWIPVCPLCQRDR
TLVLQAYAPHSVHPQRELYLYGCNSIQCSGQAESWYPVRVVKCAEMEKGV
DKSSASPAAPEEAQMSAKRESINWDSDSDLSSSSDSSADALVGELEELSL
ALKRTNIEEKTCLRKQVERKVTPAIGAGRKVSDEGGTQQCSTPLCSFYVE
VDNEPGAEQCDEDEKQVSRLLSKYKEEEKLRSKSGISEQWPAEPDEEDKP
EVVSLQKFNERIARAPEQILRYDLGGEPLWPRHPPAHTKTKTCECGAPMI
FELQLLASCIHYLKPENALPTEEKEAGMNFASVAIYTCANDCEEAKSVAG
NASFKGFEQEICVQRDDW*

mRNA from alignment at tig00000108_pilon:298026..299132+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10431.t1 ID=Ggra10431.t1|Name=Ggra10431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000108_pilon:298026..299132+ (Gracilaria gracilis GNS1m male)
ATGTCAACTAGTTGTATTCTAGGATTTGCTTCGTCGGAGTGGAAGGCAGA
AAATGGCGAATGGTATGATACCCACATTGGGGGTGTCGCCGTGTGGCCAG
AACATGTGCATGCATGGATTCCGGTATGCCCACTATGTCAGCGTGATCGG
ACTCTAGTGTTGCAGGCCTACGCCCCTCACTCTGTGCACCCGCAGAGGGA
ATTGTATTTGTACGGGTGTAACTCTATTCAGTGTTCAGGTCAAGCAGAAT
CATGGTACCCCGTTCGCGTTGTAAAGTGTGCTGAAATGGAAAAGGGTGTA
GATAAGAGCTCTGCTTCTCCCGCTGCTCCTGAAGAAGCTCAAATGTCAGC
AAAACGTGAGAGTATAAATTGGGATTCCGATTCAGATTTAAGCAGCTCAA
GTGACTCTAGCGCAGATGCTTTGGTTGGAGAATTGGAAGAACTCTCTTTA
GCATTAAAGCGGACTAACATAGAAGAGAAAACGTGCTTGAGAAAGCAGGT
AGAAAGAAAAGTAACGCCAGCCATAGGCGCCGGAAGAAAAGTAAGCGACG
AAGGGGGTACGCAGCAGTGCTCAACACCTCTGTGTTCGTTTTATGTGGAA
GTTGACAACGAGCCGGGTGCAGAACAGTGCGACGAAGATGAAAAACAGGT
CAGTCGTTTATTAAGCAAGTATAAAGAAGAAGAAAAGTTAAGAAGCAAAA
GCGGAATCAGTGAACAGTGGCCAGCTGAACCAGATGAAGAGGATAAGCCT
GAAGTGGTCTCCCTCCAGAAATTCAACGAAAGAATAGCAAGAGCTCCGGA
ACAGATCTTACGCTACGACCTTGGCGGGGAACCATTGTGGCCACGACATC
CGCCAGCGCATACGAAAACGAAAACGTGCGAATGTGGAGCACCCATGATC
TTCGAACTACAACTGCTTGCTTCTTGCATACACTATTTGAAACCCGAGAA
TGCGTTGCCGACAGAGGAAAAAGAAGCGGGCATGAATTTCGCTTCAGTCG
CAATATACACATGTGCCAATGACTGCGAAGAAGCGAAAAGCGTGGCCGGG
AACGCTTCGTTCAAGGGTTTTGAACAAGAGATCTGCGTGCAGCGAGACGA
TTGGTGA

Coding sequence (CDS) from alignment at tig00000108_pilon:298026..299132+

>Ggra10431.t1 ID=Ggra10431.t1|Name=Ggra10431.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000108_pilon:298026..299132+ (Gracilaria gracilis GNS1m male)
ATGTCAACTAGTTGTATTCTAGGATTTGCTTCGTCGGAGTGGAAGGCAGA
AAATGGCGAATGGTATGATACCCACATTGGGGGTGTCGCCGTGTGGCCAG
AACATGTGCATGCATGGATTCCGGTATGCCCACTATGTCAGCGTGATCGG
ACTCTAGTGTTGCAGGCCTACGCCCCTCACTCTGTGCACCCGCAGAGGGA
ATTGTATTTGTACGGGTGTAACTCTATTCAGTGTTCAGGTCAAGCAGAAT
CATGGTACCCCGTTCGCGTTGTAAAGTGTGCTGAAATGGAAAAGGGTGTA
GATAAGAGCTCTGCTTCTCCCGCTGCTCCTGAAGAAGCTCAAATGTCAGC
AAAACGTGAGAGTATAAATTGGGATTCCGATTCAGATTTAAGCAGCTCAA
GTGACTCTAGCGCAGATGCTTTGGTTGGAGAATTGGAAGAACTCTCTTTA
GCATTAAAGCGGACTAACATAGAAGAGAAAACGTGCTTGAGAAAGCAGGT
AGAAAGAAAAGTAACGCCAGCCATAGGCGCCGGAAGAAAAGTAAGCGACG
AAGGGGGTACGCAGCAGTGCTCAACACCTCTGTGTTCGTTTTATGTGGAA
GTTGACAACGAGCCGGGTGCAGAACAGTGCGACGAAGATGAAAAACAGGT
CAGTCGTTTATTAAGCAAGTATAAAGAAGAAGAAAAGTTAAGAAGCAAAA
GCGGAATCAGTGAACAGTGGCCAGCTGAACCAGATGAAGAGGATAAGCCT
GAAGTGGTCTCCCTCCAGAAATTCAACGAAAGAATAGCAAGAGCTCCGGA
ACAGATCTTACGCTACGACCTTGGCGGGGAACCATTGTGGCCACGACATC
CGCCAGCGCATACGAAAACGAAAACGTGCGAATGTGGAGCACCCATGATC
TTCGAACTACAACTGCTTGCTTCTTGCATACACTATTTGAAACCCGAGAA
TGCGTTGCCGACAGAGGAAAAAGAAGCGGGCATGAATTTCGCTTCAGTCG
CAATATACACATGTGCCAATGACTGCGAAGAAGCGAAAAGCGTGGCCGGG
AACGCTTCGTTCAAGGGTTTTGAACAAGAGATCTGCGTGCAGCGAGACGA
TTGGTGA