Ggra10387.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10387.t1
Unique NameGgra10387.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:187801..188805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1CNL2
PFAMsEamA
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue2.58e-37
EggNOG OGsCOG0697@1|root,KOG4510@2759|Eukaryota,395GA@33154|Opisthokonta,3NUM2@4751|Fungi,1GSM9@112252|Fungi incertae sedis
DescriptionEamA-like transporter family
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10387Ggra10387Gracilaria gracilis GNS1m malegenetig00000108_pilon 187801..188805 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10387.t1.start1Ggra10387.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 187801..187803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10387.t1.CDS1Ggra10387.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 187801..188805 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10387.t1.exon1Ggra10387.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 187801..188805 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10387.t1.stop1Ggra10387.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 188803..188805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10387.t1Ggra10387.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 187801..188805 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10387.t1 ID=Ggra10387.t1|Name=Ggra10387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=335bp
MTIPLYTTPHKGAEAQPLLPRAAAHAPSHAPSHAPSHALRHEMVGLFLMA
FSTVGYSCMTVLIRLAERRYHFHPSSSVLLRGVLHTVASGALAFAVFNAS
LTSLSWRLRRLLLFRGAIGACGMLCLYTALSHIPAGNVMSIFAFSPVITM
TASHFVLRERATVVDALSAVIGLLGIFLIAQPDASASSTSAHLLGSFLAF
CGACFASTGYVAVRGMGANVHFSLNVFSLSSFCVLGSAILGRKQAITDIF
TNVSGANIVILAAAFAFLGQCCLNKGLQMCQAGPGTIMRNLDVPIVYIMA
IFLLGEKPDMYRLLGSTLVVAASLLVGMNKLLNS*
back to top

spliced messenger RNA

>Ggra10387.t1 ID=Ggra10387.t1|Name=Ggra10387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000108_pilon:187801..188805+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATTCCGCTCTACACCACGCCGCACAAGGGCGCCGAGGCGCAGCC
GCTGCTGCCGCGCGCCGCCGCGCACGCGCCGTCGCACGCGCCGTCGCACG
CGCCGTCGCACGCGCTTCGCCACGAGATGGTCGGCCTCTTTCTCATGGCC
TTCTCCACCGTGGGCTACTCGTGCATGACCGTGCTCATCCGTCTGGCGGA
GCGCCGCTACCACTTCCACCCGTCGTCGTCCGTGCTGCTTCGCGGCGTGC
TGCACACCGTCGCGTCGGGCGCGCTGGCGTTTGCCGTGTTCAACGCCTCT
CTCACCTCCTTGTCGTGGCGCCTTCGTCGCCTGCTCTTGTTTCGCGGCGC
AATTGGCGCCTGCGGCATGCTCTGTCTGTACACCGCTCTCAGCCACATTC
CGGCGGGAAACGTCATGTCCATCTTCGCCTTCTCGCCCGTCATTACCATG
ACCGCGTCGCACTTTGTGCTGCGCGAGCGCGCCACCGTCGTCGATGCGCT
CAGCGCCGTCATCGGCCTGTTGGGCATTTTCCTCATTGCGCAGCCCGACG
CGTCAGCTTCGTCCACGTCTGCTCATCTGCTAGGCTCCTTCTTGGCCTTT
TGCGGCGCCTGTTTCGCCTCCACGGGCTATGTGGCCGTGCGTGGTATGGG
CGCCAACGTGCACTTCTCGCTCAACGTGTTTTCGCTCAGCTCGTTCTGCG
TGCTTGGCAGTGCTATACTCGGCCGAAAACAGGCAATCACCGACATATTT
ACAAACGTATCGGGCGCCAACATCGTCATTCTCGCCGCGGCGTTTGCCTT
TCTTGGCCAGTGCTGTCTCAACAAGGGCTTGCAAATGTGCCAAGCAGGGC
CGGGAACCATCATGAGGAACCTGGATGTGCCCATCGTGTACATCATGGCC
ATATTCCTTCTCGGTGAGAAACCAGACATGTATAGATTGCTTGGATCCAC
GCTGGTGGTTGCTGCCTCGTTACTGGTCGGAATGAACAAACTGCTCAATT
CGTAA
back to top

protein sequence of Ggra10387.t1

>Ggra10387.t1 ID=Ggra10387.t1|Name=Ggra10387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=335bp
MTIPLYTTPHKGAEAQPLLPRAAAHAPSHAPSHAPSHALRHEMVGLFLMA
FSTVGYSCMTVLIRLAERRYHFHPSSSVLLRGVLHTVASGALAFAVFNAS
LTSLSWRLRRLLLFRGAIGACGMLCLYTALSHIPAGNVMSIFAFSPVITM
TASHFVLRERATVVDALSAVIGLLGIFLIAQPDASASSTSAHLLGSFLAF
CGACFASTGYVAVRGMGANVHFSLNVFSLSSFCVLGSAILGRKQAITDIF
TNVSGANIVILAAAFAFLGQCCLNKGLQMCQAGPGTIMRNLDVPIVYIMA
IFLLGEKPDMYRLLGSTLVVAASLLVGMNKLLNS*
back to top

mRNA from alignment at tig00000108_pilon:187801..188805+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10387.t1 ID=Ggra10387.t1|Name=Ggra10387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000108_pilon:187801..188805+ (Gracilaria gracilis GNS1m male)
ATGACCATTCCGCTCTACACCACGCCGCACAAGGGCGCCGAGGCGCAGCC
GCTGCTGCCGCGCGCCGCCGCGCACGCGCCGTCGCACGCGCCGTCGCACG
CGCCGTCGCACGCGCTTCGCCACGAGATGGTCGGCCTCTTTCTCATGGCC
TTCTCCACCGTGGGCTACTCGTGCATGACCGTGCTCATCCGTCTGGCGGA
GCGCCGCTACCACTTCCACCCGTCGTCGTCCGTGCTGCTTCGCGGCGTGC
TGCACACCGTCGCGTCGGGCGCGCTGGCGTTTGCCGTGTTCAACGCCTCT
CTCACCTCCTTGTCGTGGCGCCTTCGTCGCCTGCTCTTGTTTCGCGGCGC
AATTGGCGCCTGCGGCATGCTCTGTCTGTACACCGCTCTCAGCCACATTC
CGGCGGGAAACGTCATGTCCATCTTCGCCTTCTCGCCCGTCATTACCATG
ACCGCGTCGCACTTTGTGCTGCGCGAGCGCGCCACCGTCGTCGATGCGCT
CAGCGCCGTCATCGGCCTGTTGGGCATTTTCCTCATTGCGCAGCCCGACG
CGTCAGCTTCGTCCACGTCTGCTCATCTGCTAGGCTCCTTCTTGGCCTTT
TGCGGCGCCTGTTTCGCCTCCACGGGCTATGTGGCCGTGCGTGGTATGGG
CGCCAACGTGCACTTCTCGCTCAACGTGTTTTCGCTCAGCTCGTTCTGCG
TGCTTGGCAGTGCTATACTCGGCCGAAAACAGGCAATCACCGACATATTT
ACAAACGTATCGGGCGCCAACATCGTCATTCTCGCCGCGGCGTTTGCCTT
TCTTGGCCAGTGCTGTCTCAACAAGGGCTTGCAAATGTGCCAAGCAGGGC
CGGGAACCATCATGAGGAACCTGGATGTGCCCATCGTGTACATCATGGCC
ATATTCCTTCTCGGTGAGAAACCAGACATGTATAGATTGCTTGGATCCAC
GCTGGTGGTTGCTGCCTCGTTACTGGTCGGAATGAACAAACTGCTCAATT
CGTAA
back to top

Coding sequence (CDS) from alignment at tig00000108_pilon:187801..188805+

>Ggra10387.t1 ID=Ggra10387.t1|Name=Ggra10387.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00000108_pilon:187801..188805+ (Gracilaria gracilis GNS1m male)
ATGACCATTCCGCTCTACACCACGCCGCACAAGGGCGCCGAGGCGCAGCC
GCTGCTGCCGCGCGCCGCCGCGCACGCGCCGTCGCACGCGCCGTCGCACG
CGCCGTCGCACGCGCTTCGCCACGAGATGGTCGGCCTCTTTCTCATGGCC
TTCTCCACCGTGGGCTACTCGTGCATGACCGTGCTCATCCGTCTGGCGGA
GCGCCGCTACCACTTCCACCCGTCGTCGTCCGTGCTGCTTCGCGGCGTGC
TGCACACCGTCGCGTCGGGCGCGCTGGCGTTTGCCGTGTTCAACGCCTCT
CTCACCTCCTTGTCGTGGCGCCTTCGTCGCCTGCTCTTGTTTCGCGGCGC
AATTGGCGCCTGCGGCATGCTCTGTCTGTACACCGCTCTCAGCCACATTC
CGGCGGGAAACGTCATGTCCATCTTCGCCTTCTCGCCCGTCATTACCATG
ACCGCGTCGCACTTTGTGCTGCGCGAGCGCGCCACCGTCGTCGATGCGCT
CAGCGCCGTCATCGGCCTGTTGGGCATTTTCCTCATTGCGCAGCCCGACG
CGTCAGCTTCGTCCACGTCTGCTCATCTGCTAGGCTCCTTCTTGGCCTTT
TGCGGCGCCTGTTTCGCCTCCACGGGCTATGTGGCCGTGCGTGGTATGGG
CGCCAACGTGCACTTCTCGCTCAACGTGTTTTCGCTCAGCTCGTTCTGCG
TGCTTGGCAGTGCTATACTCGGCCGAAAACAGGCAATCACCGACATATTT
ACAAACGTATCGGGCGCCAACATCGTCATTCTCGCCGCGGCGTTTGCCTT
TCTTGGCCAGTGCTGTCTCAACAAGGGCTTGCAAATGTGCCAAGCAGGGC
CGGGAACCATCATGAGGAACCTGGATGTGCCCATCGTGTACATCATGGCC
ATATTCCTTCTCGGTGAGAAACCAGACATGTATAGATTGCTTGGATCCAC
GCTGGTGGTTGCTGCCTCGTTACTGGTCGGAATGAACAAACTGCTCAATT
CGTAA
back to top