Ggra5385.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5385.t1
Unique NameGgra5385.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:100081..101514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5385Ggra5385Gracilaria gracilis GNS1m malegenetig00000099_pilon 100081..101514 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5385.t1.stop1Ggra5385.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 100081..100083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5385.t1.CDS1Ggra5385.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 100081..101514 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5385.t1.exon1Ggra5385.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 100081..101514 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5385.t1.start1Ggra5385.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 101512..101514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5385.t1Ggra5385.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 100081..101514 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5385.t1 ID=Ggra5385.t1|Name=Ggra5385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MDALRGVGMQSPTKTRKSSRTCTAEESWRANLRDIEVSDPNFFTSDDAKL
SRESSTWKERLAYDGLNATLANCLAVQRLYDVFYKAKELQQIGSEEEFHR
LCSTVSQYLRLCVAHLFCAKDDVYRTEVLFVCVASLELTEGFMDFVLECR
SARTALRKARHLRTVCRAAWEFMNTDHARSRLRSVSQYLTIVIDGIRSNS
ARSALITDPQCIPFDLLKKCMRTAMDTMSDWISWHKFESRSGVSLNQNQL
RGLVTEWTSAFIPFLVLCSGGQSPQVITHIQVPCDNTFKENIREAHRIGY
IRLSTLHGKRTLCLGLPEVILSDVALPYLGFHVFVILPTIYSLTKKVELQ
NGWRAMLVNKMTGDEIKSWRVAYEVKRFFSEVDPRFSNVTCKSLRSTCML
VLLGAFREKRLLNGRDESHFLDITARYFNTTKTQLRSNVGCRGSAAHRAT
AEELTMFLSKASEYEVRNRESNGDYHR*
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spliced messenger RNA

>Ggra5385.t1 ID=Ggra5385.t1|Name=Ggra5385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000099_pilon:100081..101514- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCACTGCGGGGAGTTGGAATGCAATCGCCCACGAAGACGAGGAA
GAGTTCTAGAACTTGTACTGCGGAAGAGTCGTGGCGCGCGAACTTGAGGG
ACATAGAAGTTTCGGATCCCAACTTCTTTACGTCAGATGATGCTAAGCTC
TCGCGCGAGTCAAGCACTTGGAAAGAAAGGCTTGCCTATGACGGATTGAA
TGCAACATTAGCTAATTGTCTGGCTGTTCAAAGGCTGTATGACGTCTTCT
ACAAGGCAAAAGAGCTTCAACAGATTGGATCGGAAGAAGAATTTCACCGT
CTGTGCTCTACGGTATCACAATATTTGAGGCTTTGTGTTGCTCATTTATT
CTGCGCGAAAGATGATGTGTACCGGACCGAAGTCCTTTTCGTTTGCGTTG
CGAGCCTAGAACTGACTGAGGGCTTCATGGATTTCGTTTTGGAGTGTCGC
TCTGCCAGAACTGCGCTCCGAAAGGCACGTCATCTGAGGACTGTATGTCG
AGCTGCGTGGGAATTCATGAACACTGACCATGCACGTTCGCGCTTGCGCA
GTGTTTCACAGTACTTAACTATCGTTATTGATGGGATTAGAAGCAATTCT
GCACGTTCAGCTCTGATAACAGATCCCCAATGCATTCCGTTCGATCTGTT
GAAGAAGTGTATGAGAACGGCAATGGACACGATGAGCGACTGGATTTCAT
GGCATAAGTTCGAATCCAGATCTGGAGTTTCATTGAATCAGAATCAGCTA
CGTGGTCTTGTAACTGAGTGGACGTCTGCTTTCATTCCATTTCTTGTCTT
ATGTAGTGGCGGACAGAGTCCTCAAGTCATAACTCACATTCAAGTGCCAT
GTGATAATACTTTCAAGGAAAATATCCGAGAAGCACACCGAATTGGATAT
ATAAGGCTCTCAACTCTCCACGGGAAAAGAACACTATGTCTCGGTCTTCC
AGAAGTAATTCTCTCAGATGTTGCACTTCCGTACCTTGGTTTTCATGTTT
TTGTCATACTGCCTACGATTTACTCATTGACGAAGAAGGTTGAACTGCAA
AATGGTTGGAGGGCAATGCTCGTCAATAAGATGACTGGAGACGAAATAAA
GTCATGGAGGGTGGCGTATGAAGTTAAGAGGTTCTTCTCCGAGGTAGACC
CCAGGTTTTCAAATGTGACTTGCAAAAGTCTGAGAAGTACTTGCATGTTG
GTACTTCTTGGAGCATTTCGGGAAAAACGACTGCTAAATGGAAGGGACGA
GAGTCATTTCCTGGATATTACTGCTCGATACTTCAACACTACCAAGACGC
AGCTGAGAAGCAATGTAGGCTGCAGGGGCTCCGCAGCACATAGAGCTACG
GCCGAAGAGCTGACAATGTTTCTTTCGAAGGCTTCTGAATATGAGGTTCG
CAACCGAGAATCAAATGGAGATTACCACCGTTGA
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protein sequence of Ggra5385.t1

>Ggra5385.t1 ID=Ggra5385.t1|Name=Ggra5385.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MDALRGVGMQSPTKTRKSSRTCTAEESWRANLRDIEVSDPNFFTSDDAKL
SRESSTWKERLAYDGLNATLANCLAVQRLYDVFYKAKELQQIGSEEEFHR
LCSTVSQYLRLCVAHLFCAKDDVYRTEVLFVCVASLELTEGFMDFVLECR
SARTALRKARHLRTVCRAAWEFMNTDHARSRLRSVSQYLTIVIDGIRSNS
ARSALITDPQCIPFDLLKKCMRTAMDTMSDWISWHKFESRSGVSLNQNQL
RGLVTEWTSAFIPFLVLCSGGQSPQVITHIQVPCDNTFKENIREAHRIGY
IRLSTLHGKRTLCLGLPEVILSDVALPYLGFHVFVILPTIYSLTKKVELQ
NGWRAMLVNKMTGDEIKSWRVAYEVKRFFSEVDPRFSNVTCKSLRSTCML
VLLGAFREKRLLNGRDESHFLDITARYFNTTKTQLRSNVGCRGSAAHRAT
AEELTMFLSKASEYEVRNRESNGDYHR*
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mRNA from alignment at tig00000099_pilon:100081..101514-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5385.t1 ID=Ggra5385.t1|Name=Ggra5385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000099_pilon:100081..101514- (Gracilaria gracilis GNS1m male)
ATGGATGCACTGCGGGGAGTTGGAATGCAATCGCCCACGAAGACGAGGAA
GAGTTCTAGAACTTGTACTGCGGAAGAGTCGTGGCGCGCGAACTTGAGGG
ACATAGAAGTTTCGGATCCCAACTTCTTTACGTCAGATGATGCTAAGCTC
TCGCGCGAGTCAAGCACTTGGAAAGAAAGGCTTGCCTATGACGGATTGAA
TGCAACATTAGCTAATTGTCTGGCTGTTCAAAGGCTGTATGACGTCTTCT
ACAAGGCAAAAGAGCTTCAACAGATTGGATCGGAAGAAGAATTTCACCGT
CTGTGCTCTACGGTATCACAATATTTGAGGCTTTGTGTTGCTCATTTATT
CTGCGCGAAAGATGATGTGTACCGGACCGAAGTCCTTTTCGTTTGCGTTG
CGAGCCTAGAACTGACTGAGGGCTTCATGGATTTCGTTTTGGAGTGTCGC
TCTGCCAGAACTGCGCTCCGAAAGGCACGTCATCTGAGGACTGTATGTCG
AGCTGCGTGGGAATTCATGAACACTGACCATGCACGTTCGCGCTTGCGCA
GTGTTTCACAGTACTTAACTATCGTTATTGATGGGATTAGAAGCAATTCT
GCACGTTCAGCTCTGATAACAGATCCCCAATGCATTCCGTTCGATCTGTT
GAAGAAGTGTATGAGAACGGCAATGGACACGATGAGCGACTGGATTTCAT
GGCATAAGTTCGAATCCAGATCTGGAGTTTCATTGAATCAGAATCAGCTA
CGTGGTCTTGTAACTGAGTGGACGTCTGCTTTCATTCCATTTCTTGTCTT
ATGTAGTGGCGGACAGAGTCCTCAAGTCATAACTCACATTCAAGTGCCAT
GTGATAATACTTTCAAGGAAAATATCCGAGAAGCACACCGAATTGGATAT
ATAAGGCTCTCAACTCTCCACGGGAAAAGAACACTATGTCTCGGTCTTCC
AGAAGTAATTCTCTCAGATGTTGCACTTCCGTACCTTGGTTTTCATGTTT
TTGTCATACTGCCTACGATTTACTCATTGACGAAGAAGGTTGAACTGCAA
AATGGTTGGAGGGCAATGCTCGTCAATAAGATGACTGGAGACGAAATAAA
GTCATGGAGGGTGGCGTATGAAGTTAAGAGGTTCTTCTCCGAGGTAGACC
CCAGGTTTTCAAATGTGACTTGCAAAAGTCTGAGAAGTACTTGCATGTTG
GTACTTCTTGGAGCATTTCGGGAAAAACGACTGCTAAATGGAAGGGACGA
GAGTCATTTCCTGGATATTACTGCTCGATACTTCAACACTACCAAGACGC
AGCTGAGAAGCAATGTAGGCTGCAGGGGCTCCGCAGCACATAGAGCTACG
GCCGAAGAGCTGACAATGTTTCTTTCGAAGGCTTCTGAATATGAGGTTCG
CAACCGAGAATCAAATGGAGATTACCACCGTTGA
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Coding sequence (CDS) from alignment at tig00000099_pilon:100081..101514-

>Ggra5385.t1 ID=Ggra5385.t1|Name=Ggra5385.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000099_pilon:100081..101514- (Gracilaria gracilis GNS1m male)
ATGGATGCACTGCGGGGAGTTGGAATGCAATCGCCCACGAAGACGAGGAA
GAGTTCTAGAACTTGTACTGCGGAAGAGTCGTGGCGCGCGAACTTGAGGG
ACATAGAAGTTTCGGATCCCAACTTCTTTACGTCAGATGATGCTAAGCTC
TCGCGCGAGTCAAGCACTTGGAAAGAAAGGCTTGCCTATGACGGATTGAA
TGCAACATTAGCTAATTGTCTGGCTGTTCAAAGGCTGTATGACGTCTTCT
ACAAGGCAAAAGAGCTTCAACAGATTGGATCGGAAGAAGAATTTCACCGT
CTGTGCTCTACGGTATCACAATATTTGAGGCTTTGTGTTGCTCATTTATT
CTGCGCGAAAGATGATGTGTACCGGACCGAAGTCCTTTTCGTTTGCGTTG
CGAGCCTAGAACTGACTGAGGGCTTCATGGATTTCGTTTTGGAGTGTCGC
TCTGCCAGAACTGCGCTCCGAAAGGCACGTCATCTGAGGACTGTATGTCG
AGCTGCGTGGGAATTCATGAACACTGACCATGCACGTTCGCGCTTGCGCA
GTGTTTCACAGTACTTAACTATCGTTATTGATGGGATTAGAAGCAATTCT
GCACGTTCAGCTCTGATAACAGATCCCCAATGCATTCCGTTCGATCTGTT
GAAGAAGTGTATGAGAACGGCAATGGACACGATGAGCGACTGGATTTCAT
GGCATAAGTTCGAATCCAGATCTGGAGTTTCATTGAATCAGAATCAGCTA
CGTGGTCTTGTAACTGAGTGGACGTCTGCTTTCATTCCATTTCTTGTCTT
ATGTAGTGGCGGACAGAGTCCTCAAGTCATAACTCACATTCAAGTGCCAT
GTGATAATACTTTCAAGGAAAATATCCGAGAAGCACACCGAATTGGATAT
ATAAGGCTCTCAACTCTCCACGGGAAAAGAACACTATGTCTCGGTCTTCC
AGAAGTAATTCTCTCAGATGTTGCACTTCCGTACCTTGGTTTTCATGTTT
TTGTCATACTGCCTACGATTTACTCATTGACGAAGAAGGTTGAACTGCAA
AATGGTTGGAGGGCAATGCTCGTCAATAAGATGACTGGAGACGAAATAAA
GTCATGGAGGGTGGCGTATGAAGTTAAGAGGTTCTTCTCCGAGGTAGACC
CCAGGTTTTCAAATGTGACTTGCAAAAGTCTGAGAAGTACTTGCATGTTG
GTACTTCTTGGAGCATTTCGGGAAAAACGACTGCTAAATGGAAGGGACGA
GAGTCATTTCCTGGATATTACTGCTCGATACTTCAACACTACCAAGACGC
AGCTGAGAAGCAATGTAGGCTGCAGGGGCTCCGCAGCACATAGAGCTACG
GCCGAAGAGCTGACAATGTTTCTTTCGAAGGCTTCTGAATATGAGGTTCG
CAACCGAGAATCAAATGGAGATTACCACCGTTGA
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