Ggra10901.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10901.t1
Unique NameGgra10901.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000098_piloncontigtig00000098_pilon:84731..85789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10901Ggra10901Gracilaria gracilis GNS1m malegenetig00000098_pilon 84731..85789 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10901.t1.start1Ggra10901.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000098_pilon 84731..84733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10901.t1.CDS1Ggra10901.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000098_pilon 84731..85789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10901.t1.exon1Ggra10901.t1.exon1Gracilaria gracilis GNS1m maleexontig00000098_pilon 84731..85789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10901.t1.stop1Ggra10901.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000098_pilon 85787..85789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10901.t1Ggra10901.t1Gracilaria gracilis GNS1m malepolypeptidetig00000098_pilon 84731..85789 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10901.t1 ID=Ggra10901.t1|Name=Ggra10901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MEGVTNTTITLSSKTYVILNGYGFREVEATDEAGGTLPSHFGENDEFAIR
SGDTIIAKFNRVPFALLIGKLGEYVVVRNALNYYRTSATFVPRIAVTAAN
RVMLNIADFNSNDLYVGNKGGKVWFYNYVASTETLTSFGVFYIGFHFWED
RPTIEVAAAKIASCTPAGIRFKDRFNAPNQLESYLAGILPKQTDLSRVSF
STPGPYYHMAFTFEDVLEINDPSRELVKVVNTMKNSLSVTNVDASEVPST
NIAAVIGEQKSGTEIIIESAVNSPAPVFISNMPYPTIPTRFSSMLPAQKK
LAVTWKGMTYYPFIYYERVMLWGRKGDQWLNTHQREFKGWQFLGMSIREK
IG*
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spliced messenger RNA

>Ggra10901.t1 ID=Ggra10901.t1|Name=Ggra10901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000098_pilon:84731..85789+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGAGTGACGAACACTACAATTACTTTATCTTCCAAGACTTATGT
GATACTGAATGGTTATGGATTCCGCGAGGTGGAGGCTACTGATGAGGCAG
GCGGCACTCTGCCCTCCCACTTTGGAGAGAACGATGAATTCGCCATCAGA
AGTGGTGATACCATAATAGCCAAATTCAATCGTGTGCCATTCGCTCTTCT
TATTGGGAAGTTGGGAGAATATGTGGTTGTTCGGAACGCACTCAACTACT
ATCGCACTTCCGCGACGTTTGTTCCAAGAATTGCAGTTACAGCTGCAAAC
AGGGTGATGCTTAACATTGCGGACTTCAACTCCAACGATCTTTATGTGGG
CAACAAAGGTGGCAAAGTATGGTTCTACAATTACGTCGCTTCTACTGAAA
CACTAACTTCGTTTGGAGTATTCTACATCGGTTTCCACTTTTGGGAGGAT
CGCCCAACGATTGAAGTAGCGGCTGCAAAGATTGCCTCTTGTACTCCAGC
TGGGATACGTTTCAAAGACCGCTTTAACGCTCCAAACCAACTTGAGAGCT
ATCTCGCTGGGATCTTGCCGAAGCAAACTGATCTGAGTCGTGTGAGTTTC
TCCACTCCCGGTCCCTACTACCATATGGCGTTTACTTTTGAAGATGTGTT
GGAGATTAATGATCCAAGCCGTGAGTTGGTGAAAGTGGTTAATACTATGA
AGAACTCACTGTCGGTAACCAATGTGGATGCGTCTGAAGTGCCCAGCACC
AACATCGCAGCAGTAATAGGCGAACAAAAGTCAGGTACTGAGATAATAAT
CGAAAGCGCAGTGAATTCGCCTGCACCGGTTTTCATTTCGAATATGCCGT
ATCCAACGATTCCAACGCGTTTCAGTTCTATGCTGCCAGCACAGAAGAAG
CTGGCAGTGACATGGAAAGGTATGACGTATTACCCATTTATTTACTACGA
GCGAGTAATGCTTTGGGGGCGGAAGGGTGATCAATGGTTAAACACCCACC
AGAGGGAATTCAAAGGTTGGCAATTTCTGGGTATGAGTATAAGGGAAAAA
ATTGGATGA
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protein sequence of Ggra10901.t1

>Ggra10901.t1 ID=Ggra10901.t1|Name=Ggra10901.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MEGVTNTTITLSSKTYVILNGYGFREVEATDEAGGTLPSHFGENDEFAIR
SGDTIIAKFNRVPFALLIGKLGEYVVVRNALNYYRTSATFVPRIAVTAAN
RVMLNIADFNSNDLYVGNKGGKVWFYNYVASTETLTSFGVFYIGFHFWED
RPTIEVAAAKIASCTPAGIRFKDRFNAPNQLESYLAGILPKQTDLSRVSF
STPGPYYHMAFTFEDVLEINDPSRELVKVVNTMKNSLSVTNVDASEVPST
NIAAVIGEQKSGTEIIIESAVNSPAPVFISNMPYPTIPTRFSSMLPAQKK
LAVTWKGMTYYPFIYYERVMLWGRKGDQWLNTHQREFKGWQFLGMSIREK
IG*
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mRNA from alignment at tig00000098_pilon:84731..85789+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10901.t1 ID=Ggra10901.t1|Name=Ggra10901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000098_pilon:84731..85789+ (Gracilaria gracilis GNS1m male)
ATGGAAGGAGTGACGAACACTACAATTACTTTATCTTCCAAGACTTATGT
GATACTGAATGGTTATGGATTCCGCGAGGTGGAGGCTACTGATGAGGCAG
GCGGCACTCTGCCCTCCCACTTTGGAGAGAACGATGAATTCGCCATCAGA
AGTGGTGATACCATAATAGCCAAATTCAATCGTGTGCCATTCGCTCTTCT
TATTGGGAAGTTGGGAGAATATGTGGTTGTTCGGAACGCACTCAACTACT
ATCGCACTTCCGCGACGTTTGTTCCAAGAATTGCAGTTACAGCTGCAAAC
AGGGTGATGCTTAACATTGCGGACTTCAACTCCAACGATCTTTATGTGGG
CAACAAAGGTGGCAAAGTATGGTTCTACAATTACGTCGCTTCTACTGAAA
CACTAACTTCGTTTGGAGTATTCTACATCGGTTTCCACTTTTGGGAGGAT
CGCCCAACGATTGAAGTAGCGGCTGCAAAGATTGCCTCTTGTACTCCAGC
TGGGATACGTTTCAAAGACCGCTTTAACGCTCCAAACCAACTTGAGAGCT
ATCTCGCTGGGATCTTGCCGAAGCAAACTGATCTGAGTCGTGTGAGTTTC
TCCACTCCCGGTCCCTACTACCATATGGCGTTTACTTTTGAAGATGTGTT
GGAGATTAATGATCCAAGCCGTGAGTTGGTGAAAGTGGTTAATACTATGA
AGAACTCACTGTCGGTAACCAATGTGGATGCGTCTGAAGTGCCCAGCACC
AACATCGCAGCAGTAATAGGCGAACAAAAGTCAGGTACTGAGATAATAAT
CGAAAGCGCAGTGAATTCGCCTGCACCGGTTTTCATTTCGAATATGCCGT
ATCCAACGATTCCAACGCGTTTCAGTTCTATGCTGCCAGCACAGAAGAAG
CTGGCAGTGACATGGAAAGGTATGACGTATTACCCATTTATTTACTACGA
GCGAGTAATGCTTTGGGGGCGGAAGGGTGATCAATGGTTAAACACCCACC
AGAGGGAATTCAAAGGTTGGCAATTTCTGGGTATGAGTATAAGGGAAAAA
ATTGGATGA
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Coding sequence (CDS) from alignment at tig00000098_pilon:84731..85789+

>Ggra10901.t1 ID=Ggra10901.t1|Name=Ggra10901.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000098_pilon:84731..85789+ (Gracilaria gracilis GNS1m male)
ATGGAAGGAGTGACGAACACTACAATTACTTTATCTTCCAAGACTTATGT
GATACTGAATGGTTATGGATTCCGCGAGGTGGAGGCTACTGATGAGGCAG
GCGGCACTCTGCCCTCCCACTTTGGAGAGAACGATGAATTCGCCATCAGA
AGTGGTGATACCATAATAGCCAAATTCAATCGTGTGCCATTCGCTCTTCT
TATTGGGAAGTTGGGAGAATATGTGGTTGTTCGGAACGCACTCAACTACT
ATCGCACTTCCGCGACGTTTGTTCCAAGAATTGCAGTTACAGCTGCAAAC
AGGGTGATGCTTAACATTGCGGACTTCAACTCCAACGATCTTTATGTGGG
CAACAAAGGTGGCAAAGTATGGTTCTACAATTACGTCGCTTCTACTGAAA
CACTAACTTCGTTTGGAGTATTCTACATCGGTTTCCACTTTTGGGAGGAT
CGCCCAACGATTGAAGTAGCGGCTGCAAAGATTGCCTCTTGTACTCCAGC
TGGGATACGTTTCAAAGACCGCTTTAACGCTCCAAACCAACTTGAGAGCT
ATCTCGCTGGGATCTTGCCGAAGCAAACTGATCTGAGTCGTGTGAGTTTC
TCCACTCCCGGTCCCTACTACCATATGGCGTTTACTTTTGAAGATGTGTT
GGAGATTAATGATCCAAGCCGTGAGTTGGTGAAAGTGGTTAATACTATGA
AGAACTCACTGTCGGTAACCAATGTGGATGCGTCTGAAGTGCCCAGCACC
AACATCGCAGCAGTAATAGGCGAACAAAAGTCAGGTACTGAGATAATAAT
CGAAAGCGCAGTGAATTCGCCTGCACCGGTTTTCATTTCGAATATGCCGT
ATCCAACGATTCCAACGCGTTTCAGTTCTATGCTGCCAGCACAGAAGAAG
CTGGCAGTGACATGGAAAGGTATGACGTATTACCCATTTATTTACTACGA
GCGAGTAATGCTTTGGGGGCGGAAGGGTGATCAATGGTTAAACACCCACC
AGAGGGAATTCAAAGGTTGGCAATTTCTGGGTATGAGTATAAGGGAAAAA
ATTGGATGA
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