Ggra6328.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6328.t1
Unique NameGgra6328.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length449
Homology
BLAST of Ggra6328.t1 vs. uniprot
Match: A0A2V3ICW7 (Uma2 domain-containing protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICW7_9FLOR)

HSP 1 Score: 369 bits (947), Expect = 4.620e-121
Identity = 191/304 (62.83%), Postives = 234/304 (76.97%), Query Frame = 0
Query:   11 APTQPTASHTPSPLPEVHDNSSLVSNPQSSFQELSPPITPDGQKLGTLHLQPATAQELFDIDRFIYGDYDLVDGLLIWRGMSEGDRNKQQAKNLLHLFRQREHANPTSNRVATVQASIAIPTKRYLRS-QPSSSSAPPLSEDSDESSAPRNGHPNYSILTADLAIGQKLSEEERRKLSPASKNITFPLLNPKRPPEAVYECSSTNESRDMKEKPSLYAAAEIPKYVVVNNRARSKRPQPAVYEGNLRDGKYEGFNTPRRGTDKVDLGPIGIIDAKDCINPGDVDGRMHREDREQRMRRQEAEKR 313
            AP Q  AS   S LPEV +NSSL S  QS FQE  P    D +KLG LHLQPAT +ELFDIDRF YG+YDLV+GLLIWRGMSE +RNK+QAK+LL+ F++ E   PT+ RVAT++A+IAIPTKRYL S QPSSS+APP SEDS++S  PR GHP+YS++ AD A+G+++S E+R  LSP S  ITFPL   + PPE V E +STN  RDM EK  LYA  +IPKY+ ++N AR+K PQPAVYEGNLR+GKYEG   P RG D+V+LGPIG++ AKDCI+PG  D R+HRE REQRM+R+EAEK+
Sbjct:   11 APIQQPASLALSSLPEVGENSSLESTSQSLFQEELPAAALDRRKLGALHLQPATVEELFDIDRFKYGEYDLVEGLLIWRGMSESNRNKEQAKHLLYRFQRAEQDKPTTRRVATLEATIAIPTKRYLMSHQPSSSNAPPQSEDSEKSPTPRRGHPDYSVVRADFAVGERISNEDRALLSPGSSKITFPLK--RTPPEVVVENTSTNGRRDMVEKQELYAQRKIPKYITIHNDARAKNPQPAVYEGNLRNGKYEGMEKPLRGEDEVNLGPIGVLKAKDCIHPGSPDARVHREGREQRMKREEAEKK 312          
BLAST of Ggra6328.t1 vs. uniprot
Match: A0A2V3IBX3 (Uma2 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBX3_9FLOR)

HSP 1 Score: 274 bits (701), Expect = 2.170e-85
Identity = 138/224 (61.61%), Postives = 176/224 (78.57%), Query Frame = 0
Query:   91 MSEGDRNKQQAKNLLHLFRQREHANPTSNRVATVQASIAIPTKRYLRS-QPSSSSAPPLSEDSDESSAPRNGHPNYSILTADLAIGQKLSEEERRKLSPASKNITFPLLNPKRPPEAVYECSSTNESRDMKEKPSLYAAAEIPKYVVVNNRARSKRPQPAVYEGNLRDGKYEGFNTPRRGTDKVDLGPIGIIDAKDCINPGDVDGRMHREDREQRMRRQEAEKR 313
            MSE +RNK+QAK+LL+ F++ E   PT+ RVAT++A+IAIPTKRYL S QPSSS+APP SEDS++S  PR GHP+YS++ AD A+G+++S E+R  LSP S  ITFPL   + PPE V E +STN  RDM EK  LYA  +IPKY+ ++N AR+K PQPAVYEGNLR+GKYEG   P RG D+V+LGPIG++ AKDCI+PG  D R+HRE REQRM+R+EAEK+
Sbjct:    1 MSESNRNKEQAKHLLYRFQRAEQDKPTTRRVATLEATIAIPTKRYLMSHQPSSSNAPPQSEDSEKSPTPRRGHPDYSVVRADFAVGERISNEDRALLSPGSSKITFPLK--RTPPEVVVENTSTNGRRDMVEKQELYAQRKIPKYITIHNDARAKNPQPAVYEGNLRNGKYEGMEKPLRGEDEVNLGPIGVLKAKDCIHPGSPDARVHREGREQRMKREEAEKK 222          
BLAST of Ggra6328.t1 vs. uniprot
Match: A0A2V3IF83 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF83_9FLOR)

HSP 1 Score: 96.7 bits (239), Expect = 1.170e-20
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 0
Query:  124 VQASIAIPTKRYLRSQPSSSSAPPLSEDSDESSAPRNGHPNYSILTADLAIGQKLSEEERRKLSPASKNITFPLLNPKRPPEAVYECSSTNE 215
            + A++AIP KRY R QPSSS+  PLS+DS++SS PR G+P YS+++ DLAI  KLS+E R ++SPAS+NI F L +P   P+ V E SSTN+
Sbjct:    1 MDAAVAIPIKRYPRFQPSSSNDAPLSDDSNDSSTPRRGNPKYSVVSPDLAIANKLSDEPRSRISPASQNIRFRLNHP---PQFVLESSSTNK 89          
The following BLAST results are available for this feature:
BLAST of Ggra6328.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ICW74.620e-12162.83Uma2 domain-containing protein n=3 Tax=Gracilariop... [more]
A0A2V3IBX32.170e-8561.61Uma2 domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IF831.170e-2055.43Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 298..425
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..448
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
IPR008538Putative restriction endonucleasePFAMPF05685Uma2coord: 200..262
e-value: 3.7E-6
score: 26.6
IPR012296Nuclease, putative, TT1808GENE3D3.90.1570.10tt1808, chain Acoord: 58..263
e-value: 1.5E-5
score: 26.2
IPR014012Helicase/SANT-associated domainPROSITEPS51204HSAcoord: 311..387
score: 10.337868

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:187738..189164 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1Ggra6328.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 187738..189164 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6328.t1 ID=Ggra6328.t1|Name=Ggra6328.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=449bp
MSSVHDSEARAPTQPTASHTPSPLPEVHDNSSLVSNPQSSFQELSPPITP
DGQKLGTLHLQPATAQELFDIDRFIYGDYDLVDGLLIWRGMSEGDRNKQQ
AKNLLHLFRQREHANPTSNRVATVQASIAIPTKRYLRSQPSSSSAPPLSE
DSDESSAPRNGHPNYSILTADLAIGQKLSEEERRKLSPASKNITFPLLNP
KRPPEAVYECSSTNESRDMKEKPSLYAAAEIPKYVVVNNRARSKRPQPAV
YEGNLRDGKYEGFNTPRRGTDKVDLGPIGIIDAKDCINPGDVDGRMHRED
REQRMRRQEAEKREQEEKEKRQKAEEREQEEKKKRQKAEEREQEEKKKRQ
KEKEIRQKAEEREQEEKKKRQKAEEREQEEKKKRQKEKEKRQKAEEREQE
EKKKRQEEKRKRREKDAKIKEQRELMRKAGLLPKLKQLGCKKSTSKEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008538Uma2
IPR012296Nuclease_put_TT1808
IPR014012HSA_dom