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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 243090.RB11150 |
| PFAMs | Oxidored_FMN |
| Max annot lvl | 203682|Planctomycetes |
| KEGG rclass | RC00250 |
| KEGG ko | ko:K10680 |
| KEGG Reaction | R08014,R08017,R08042 |
| KEGG Pathway | ko00633,ko01120,map00633,map01120 |
| Evalue | 9.45e-128 |
| EggNOG OGs | COG1902@1|root,COG1902@2|Bacteria,2IYAT@203682|Planctomycetes |
| Description | COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family |
| COG category | C |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10644.t1.start1 | Ggra10644.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000095_pilon 19663..19665 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10644.t1.stop1 | Ggra10644.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000095_pilon 20965..20967 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MFEPHNFLIARKTWWHFPYKDVATNFALIQATSLLHPFSPIELIWSPSST
TVYTMDKFPNLLSPLSIGSLTLKNRICMAPMSRGRAGPKLSANELVAEYY
AARASSGLIISEGSHTSILGRGWYHTPEVWTPANAKGWKIVTDRVHENDG
VMFCQLWHAGRTSHSAFRDGEQGYEGSLKMSVAPSAIKKKSESGKQSHTP
RGEVDVETPRAMTVAEIEQLPEEFRNAAQTAKDGGFDGVEIHCASGFLLD
TFLQSSSNSRTDKYGGSLENRFRIVDMVLKAVFTVYDPSRVGVRISPNGA
YNGMGSEDFRESFIYYARRFAEYKLAYLHIMIGMDFGFHKMGPAMSIADF
REVYQGVIIANMGYTADSGEKEIADGNADLISFGRPFLRNPDLVERISEG
KELRPVLPHQYWYSSVEIPLTTEGYTDLSIVQES* back to topspliced messenger RNA >Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000095_pilon:19663..20967+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTGAGCCTCACAATTTCCTAATTGCCCGTAAAACTTGGTGGCACTT
CCCCTATAAAGACGTCGCTACCAACTTTGCGTTGATTCAAGCCACGTCTC
TACTTCATCCATTCTCCCCTATCGAATTGATTTGGTCCCCTTCCTCCACA
ACTGTGTACACTATGGACAAGTTTCCCAACCTTCTGTCACCGCTGTCCAT
TGGCTCGCTCACCCTCAAGAACCGCATCTGCATGGCTCCCATGTCCCGCG
GGCGCGCTGGTCCAAAGCTTTCCGCCAACGAGCTTGTCGCCGAGTATTAT
GCCGCACGTGCCTCCTCCGGTCTCATTATAAGCGAAGGCTCGCACACCTC
CATTCTTGGTCGCGGATGGTATCACACGCCCGAAGTATGGACCCCTGCAA
ACGCAAAAGGATGGAAAATAGTCACTGATCGTGTGCATGAGAACGACGGT
GTCATGTTTTGTCAATTGTGGCATGCTGGACGAACTAGTCACTCCGCGTT
TCGCGATGGAGAACAAGGATACGAGGGTAGCCTCAAAATGTCGGTGGCAC
CTTCTGCGATTAAGAAGAAGTCAGAAAGTGGAAAGCAGAGCCATACTCCG
AGGGGTGAGGTTGATGTGGAGACTCCTCGCGCAATGACGGTAGCAGAGAT
TGAGCAGTTGCCCGAAGAATTTCGAAACGCTGCACAGACGGCTAAGGACG
GCGGCTTCGATGGTGTGGAAATTCATTGCGCCTCAGGATTTCTTTTGGAC
ACTTTTCTGCAGAGCAGTTCAAATTCACGCACGGACAAGTATGGAGGCTC
TCTAGAGAATCGATTCCGCATTGTAGACATGGTACTGAAGGCGGTTTTCA
CCGTGTACGACCCTTCCAGAGTTGGGGTCCGAATCTCCCCTAATGGAGCT
TACAATGGAATGGGTAGTGAAGATTTTCGTGAATCATTCATTTACTATGC
ACGTCGTTTTGCAGAGTACAAATTGGCATACTTGCATATCATGATCGGGA
TGGATTTCGGCTTCCATAAAATGGGCCCTGCGATGAGCATTGCTGACTTT
AGAGAAGTATACCAGGGAGTGATTATTGCCAACATGGGATACACTGCCGA
TTCAGGTGAGAAGGAGATTGCTGATGGCAATGCTGATCTTATTTCATTTG
GAAGACCGTTTCTGCGCAATCCAGATCTTGTAGAGCGGATTTCGGAAGGG
AAGGAGCTAAGGCCAGTACTACCCCATCAATACTGGTATTCTTCGGTTGA
AATTCCTCTCACCACTGAGGGGTACACCGATCTGAGTATTGTTCAAGAAT
CCTAG back to topprotein sequence of Ggra10644.t1 >Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MFEPHNFLIARKTWWHFPYKDVATNFALIQATSLLHPFSPIELIWSPSST
TVYTMDKFPNLLSPLSIGSLTLKNRICMAPMSRGRAGPKLSANELVAEYY
AARASSGLIISEGSHTSILGRGWYHTPEVWTPANAKGWKIVTDRVHENDG
VMFCQLWHAGRTSHSAFRDGEQGYEGSLKMSVAPSAIKKKSESGKQSHTP
RGEVDVETPRAMTVAEIEQLPEEFRNAAQTAKDGGFDGVEIHCASGFLLD
TFLQSSSNSRTDKYGGSLENRFRIVDMVLKAVFTVYDPSRVGVRISPNGA
YNGMGSEDFRESFIYYARRFAEYKLAYLHIMIGMDFGFHKMGPAMSIADF
REVYQGVIIANMGYTADSGEKEIADGNADLISFGRPFLRNPDLVERISEG
KELRPVLPHQYWYSSVEIPLTTEGYTDLSIVQES* back to topmRNA from alignment at tig00000095_pilon:19663..20967+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000095_pilon:19663..20967+ (Gracilaria gracilis GNS1m male)
ATGTTTGAGCCTCACAATTTCCTAATTGCCCGTAAAACTTGGTGGCACTT
CCCCTATAAAGACGTCGCTACCAACTTTGCGTTGATTCAAGCCACGTCTC
TACTTCATCCATTCTCCCCTATCGAATTGATTTGGTCCCCTTCCTCCACA
ACTGTGTACACTATGGACAAGTTTCCCAACCTTCTGTCACCGCTGTCCAT
TGGCTCGCTCACCCTCAAGAACCGCATCTGCATGGCTCCCATGTCCCGCG
GGCGCGCTGGTCCAAAGCTTTCCGCCAACGAGCTTGTCGCCGAGTATTAT
GCCGCACGTGCCTCCTCCGGTCTCATTATAAGCGAAGGCTCGCACACCTC
CATTCTTGGTCGCGGATGGTATCACACGCCCGAAGTATGGACCCCTGCAA
ACGCAAAAGGATGGAAAATAGTCACTGATCGTGTGCATGAGAACGACGGT
GTCATGTTTTGTCAATTGTGGCATGCTGGACGAACTAGTCACTCCGCGTT
TCGCGATGGAGAACAAGGATACGAGGGTAGCCTCAAAATGTCGGTGGCAC
CTTCTGCGATTAAGAAGAAGTCAGAAAGTGGAAAGCAGAGCCATACTCCG
AGGGGTGAGGTTGATGTGGAGACTCCTCGCGCAATGACGGTAGCAGAGAT
TGAGCAGTTGCCCGAAGAATTTCGAAACGCTGCACAGACGGCTAAGGACG
GCGGCTTCGATGGTGTGGAAATTCATTGCGCCTCAGGATTTCTTTTGGAC
ACTTTTCTGCAGAGCAGTTCAAATTCACGCACGGACAAGTATGGAGGCTC
TCTAGAGAATCGATTCCGCATTGTAGACATGGTACTGAAGGCGGTTTTCA
CCGTGTACGACCCTTCCAGAGTTGGGGTCCGAATCTCCCCTAATGGAGCT
TACAATGGAATGGGTAGTGAAGATTTTCGTGAATCATTCATTTACTATGC
ACGTCGTTTTGCAGAGTACAAATTGGCATACTTGCATATCATGATCGGGA
TGGATTTCGGCTTCCATAAAATGGGCCCTGCGATGAGCATTGCTGACTTT
AGAGAAGTATACCAGGGAGTGATTATTGCCAACATGGGATACACTGCCGA
TTCAGGTGAGAAGGAGATTGCTGATGGCAATGCTGATCTTATTTCATTTG
GAAGACCGTTTCTGCGCAATCCAGATCTTGTAGAGCGGATTTCGGAAGGG
AAGGAGCTAAGGCCAGTACTACCCCATCAATACTGGTATTCTTCGGTTGA
AATTCCTCTCACCACTGAGGGGTACACCGATCTGAGTATTGTTCAAGAAT
CCTAG back to topCoding sequence (CDS) from alignment at tig00000095_pilon:19663..20967+ >Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000095_pilon:19663..20967+ (Gracilaria gracilis GNS1m male)
ATGTTTGAGCCTCACAATTTCCTAATTGCCCGTAAAACTTGGTGGCACTT
CCCCTATAAAGACGTCGCTACCAACTTTGCGTTGATTCAAGCCACGTCTC
TACTTCATCCATTCTCCCCTATCGAATTGATTTGGTCCCCTTCCTCCACA
ACTGTGTACACTATGGACAAGTTTCCCAACCTTCTGTCACCGCTGTCCAT
TGGCTCGCTCACCCTCAAGAACCGCATCTGCATGGCTCCCATGTCCCGCG
GGCGCGCTGGTCCAAAGCTTTCCGCCAACGAGCTTGTCGCCGAGTATTAT
GCCGCACGTGCCTCCTCCGGTCTCATTATAAGCGAAGGCTCGCACACCTC
CATTCTTGGTCGCGGATGGTATCACACGCCCGAAGTATGGACCCCTGCAA
ACGCAAAAGGATGGAAAATAGTCACTGATCGTGTGCATGAGAACGACGGT
GTCATGTTTTGTCAATTGTGGCATGCTGGACGAACTAGTCACTCCGCGTT
TCGCGATGGAGAACAAGGATACGAGGGTAGCCTCAAAATGTCGGTGGCAC
CTTCTGCGATTAAGAAGAAGTCAGAAAGTGGAAAGCAGAGCCATACTCCG
AGGGGTGAGGTTGATGTGGAGACTCCTCGCGCAATGACGGTAGCAGAGAT
TGAGCAGTTGCCCGAAGAATTTCGAAACGCTGCACAGACGGCTAAGGACG
GCGGCTTCGATGGTGTGGAAATTCATTGCGCCTCAGGATTTCTTTTGGAC
ACTTTTCTGCAGAGCAGTTCAAATTCACGCACGGACAAGTATGGAGGCTC
TCTAGAGAATCGATTCCGCATTGTAGACATGGTACTGAAGGCGGTTTTCA
CCGTGTACGACCCTTCCAGAGTTGGGGTCCGAATCTCCCCTAATGGAGCT
TACAATGGAATGGGTAGTGAAGATTTTCGTGAATCATTCATTTACTATGC
ACGTCGTTTTGCAGAGTACAAATTGGCATACTTGCATATCATGATCGGGA
TGGATTTCGGCTTCCATAAAATGGGCCCTGCGATGAGCATTGCTGACTTT
AGAGAAGTATACCAGGGAGTGATTATTGCCAACATGGGATACACTGCCGA
TTCAGGTGAGAAGGAGATTGCTGATGGCAATGCTGATCTTATTTCATTTG
GAAGACCGTTTCTGCGCAATCCAGATCTTGTAGAGCGGATTTCGGAAGGG
AAGGAGCTAAGGCCAGTACTACCCCATCAATACTGGTATTCTTCGGTTGA
AATTCCTCTCACCACTGAGGGGTACACCGATCTGAGTATTGTTCAAGAAT
CCTAG back to top
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