Ggra4843.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4843.t1
Unique NameGgra4843.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Homology
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BLAST of Ggra4843.t1 vs. uniprot
Match: A0A2V3IFQ1 (RNase NYN domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFQ1_9FLOR)

HSP 1 Score: 66.2 bits (160), Expect = 3.010e-9
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0 
Query:   94 NYDIVIDGKNVGTDYNRRKIFRVERVERALEYFEKHGRRPVAIISKSLPKVDYSQ---------LVKLQKDGRVIIASKKVE-DWHHEYNVIDFGIQRNIPIVSNHKY------EVPSKLFGKNVGLDLLEKHLIPFMFV-KRRFLP 223
            +YDIVIDG+NVG +++  K FR   V RAL+Y+ K G +P+A + +      + +         L  L++ G V     ++E  WH    V+++  QR+IP+VSN KY      ++P +   +   LD +E   + F F   R+F P
Sbjct:  124 DYDIVIDGENVG-NFHGSKRFRSVNVVRALKYYHKQGLKPLAFVPRRCVDFRFQENRLADDPCVLKLLEEHGLVCFIVDELEFHWH----VVEYAAQRDIPLVSNRKYKPSGECDIPPERHDE--VLDAVESQRVLFTFDDSRKFKP 263
The following BLAST results are available for this feature:
BLAST of Ggra4843.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IFQ13.010e-932.65RNase NYN domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..46
NoneNo IPR availableGENE3D3.40.50.11980coord: 95..233
e-value: 2.7E-15
score: 58.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..61
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 97..225
e-value: 8.7E-12
score: 45.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:260746..261489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4843.t1Ggra4843.t1Gracilaria gracilis GNS1m malemRNAtig00000090_pilon 260746..261489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4843.t1 ID=Ggra4843.t1|Name=Ggra4843.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MARNQARTDYKKKEKKKEKKKEKKEKKKKEKKKKQLRNSASDNQNDSRNA
KQREQPKAVKKRVSAKVNVKSKPIVQERREKSVRTKTVYDLRRNYDIVID
GKNVGTDYNRRKIFRVERVERALEYFEKHGRRPVAIISKSLPKVDYSQLV
KLQKDGRVIIASKKVEDWHHEYNVIDFGIQRNIPIVSNHKYEVPSKLFGK
NVGLDLLEKHLIPFMFVKRRFLPNPSSSNLADEAIFTTRHDHKKERG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12_NYN