Ggra4836.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra4836.t1
Unique Name	Ggra4836.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	258

Homology

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BLAST of Ggra4836.t1 vs. uniprot
Match: A0A2V3J3N6 (RNA-binding motif protein, X-linked 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3N6_9FLOR)

HSP 1 Score: 260 bits (665), Expect = 5.660e-84
Identity = 136/186 (73.12%), Postives = 151/186 (81.18%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPEDGGTDTTPDGFHES--QAADAEHNXXXXXXXXXXXXXXXXXVMERLESLRKRKRIHSTSQAEARDSKRR 184
            MNKV  INNLNQTELEQGIAGTTASWHHKYL+SDAI++GGLSPSITE++LLAILEQYGTV HINL+RDA TSESKGYAFVRYAD RSCVLAVDNFTG EI+GRNLRVDHVENYRMPEDGG DTTPDGF ES  Q  D EH                  VMERLE+LRKR+R+ +++Q E RD++ R
Sbjct:    1 MNKVTAINNLNQTELEQGIAGTTASWHHKYLSSDAIYIGGLSPSITENKLLAILEQYGTVRHINLVRDAVTSESKGYAFVRYADPRSCVLAVDNFTGVEIEGRNLRVDHVENYRMPEDGGMDTTPDGFLESHQQDLDVEHTIAPSPVENAAERRRQAAVMERLEALRKRRRLEASTQDERRDAQHR 186

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BLAST of Ggra4836.t1 vs. uniprot
Match: R7QRZ0 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRZ0_CHOCR)

HSP 1 Score: 147 bits (372), Expect = 1.040e-39
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPEDGGT---DTTP 125
            M KV  I  LN+TELE+GIAGT+ASWH KY +   I+VGGL  ++TE  LLA+ EQ+G V+ +NL+R+A+T +S+G+AF++Y D RS VLAVDNFTG E+ GR LRVDH E++++P + G    DTTP
Sbjct:    1 MKKVEAIRKLNETELEEGIAGTSASWHQKYESCPFIYVGGLPTALTEGDLLAMFEQFGIVVLVNLVREADTGKSRGFAFLKYHDPRSAVLAVDNFTGTEVGGRTLRVDHAEDFKIPNEPGRGIIDTTP 128

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BLAST of Ggra4836.t1 vs. uniprot
Match: B7FS26 (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FS26_PHATC)

HSP 1 Score: 135 bits (340), Expect = 9.420e-37
Identity = 60/116 (51.72%), Postives = 88/116 (75.86%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +N+ EL++G+AGT ASWH +Y  S  ++VG L  ++TE  ++ +L QYG +  ++L+R+ +T +S+G+AF +Y D+RSCVLAVDNFTG E+ GR+LRVDHVENYR+P
Sbjct:    1 MNTIKEILRINEEELKRGLAGTAASWHQQYAQSAWVYVGNLDHALTEGDVICVLSQYGEIEDLHLVREEDTGKSRGFAFCKYEDARSCVLAVDNFTGIELCGRSLRVDHVENYRLP 116

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BLAST of Ggra4836.t1 vs. uniprot
Match: A0A7S4J9N7 (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9N7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.200e-35
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +N+ E+E+GI GT ASWH KY  S  ++VG L   +TE  +L I+ Q+G +  INL+RD +T +SKG+AFV+Y D+RSCVLAVDNF G ++ GR++RVDHVE YR+P
Sbjct:    1 MNVIAEIQRINEVEIERGIVGTPASWHAKYSESAWVYVGNLPHRLTEGDVLCIMSQFGEIEDINLVRDDDTGKSKGFAFVKYEDARSCVLAVDNFCGVKVLGRSIRVDHVEKYRLP 116

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BLAST of Ggra4836.t1 vs. uniprot
Match: K0SHL3 (RRM domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHL3_THAOC)

HSP 1 Score: 134 bits (336), Expect = 7.100e-35
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN VN I  +N  ELEQG+  T  SWH KY  S  ++ G L  ++TE  +L IL QYG +  +NL+RD +T +S+G+AFV+Y D+RSCVLAVDNFTG ++ GR LRVDHVE Y++P
Sbjct:    1 MNVVNEITRINDLELEQGLTHTAGSWHGKYRDSAWVYAGNLPHALTEGDVLCILSQYGEIEDVNLVRDDDTGKSRGFAFVKYEDARSCVLAVDNFTGAQVLGRTLRVDHVERYKLP 116

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BLAST of Ggra4836.t1 vs. uniprot
Match: B8CCB6 (RRM domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCB6_THAPS)

HSP 1 Score: 128 bits (322), Expect = 7.400e-34
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN VN I  +N  ELE+G+  T+ASWH KY  S  I  G L  ++TE  +L IL QYG +  I+L+RD ++ +SKG+AFV+Y D+RSCVLAVDN  G  + GR LRVDHVENYR+P
Sbjct:    1 MNVVNEIQRINDLELEKGLTHTSASWHDKYKDSAWIHAGNLPLNLTEGDVLCILSQYGEIDDIHLVRDKDSGKSKGFAFVKYEDARSCVLAVDNLCGSMVLGRTLRVDHVENYRLP 116

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BLAST of Ggra4836.t1 vs. uniprot
Match: A0A448ZMV0 (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMV0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.500e-33
Identity = 59/116 (50.86%), Postives = 87/116 (75.00%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +NQ EL++GIAGT+ASWH ++  S  ++VG L   +TE  +L ++ QYG V  I+L+R+ +T +S+G+AF++Y DSRSC+LAVDNF G ++ GR++RVDHVE YR+P
Sbjct:    1 MNTIREIEKINQQELDRGIAGTSASWHSQFANSAWVYVGNLDHQLTEGDVLCVMSQYGEVEDIHLVREEDTGKSRGFAFLKYEDSRSCILAVDNFCGMKVLGRSIRVDHVEQYRLP 116

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BLAST of Ggra4836.t1 vs. uniprot
Match: A0A1E7EVE9 (RRM domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVE9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.870e-32
Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +NQ EL+ GIAGT+ASWH ++  S   ++G +   +TE  +L I+ Q+G V  I+L+RD  T +S+G+AF++Y DSRSC+LAVDN  G  + GR+LRVDHVE YR+P
Sbjct:    1 MNTIREIEKINQQELDLGIAGTSASWHTQFANSAWCYLGNIDHQLTEGDILCIMSQFGEVEDIHLVRDEETGKSRGFAFLKYEDSRSCILAVDNLCGVLVLGRSLRVDHVEQYRLP 116

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BLAST of Ggra4836.t1 vs. uniprot
Match: A0A835YJH4 (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.700e-32
Identity = 60/118 (50.85%), Postives = 85/118 (72.03%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPED 118
            MN V  I  +N+ EL++G+ G+ ASWHHKY  S  ++VGGL   +TE  ++ +L Q+G +  INL+RD +T +SKG+AFV+Y D RS +LAVDN  G ++ GR LRVDHVE YR+P++
Sbjct:    1 MNVVREIQKINERELKEGLTGS-ASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKE 117

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BLAST of Ggra4836.t1 vs. uniprot
Match: A0A7S3VEH7 (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEH7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.040e-31
Identity = 57/116 (49.14%), Postives = 84/116 (72.41%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRLLAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I+ +N  ELE G+  T ASWH KY+ S  +++G L   ++E  +LA++ Q+G V  +NL+R+  T +SKG+AF++Y D+RSC+LAVDN +G  + GR+LRVDHVENYR+P
Sbjct:    1 MNVIKEIHRINDLELENGMVNTPASWHQKYINSAWVYIGNLPIRLSEGDILAVMSQWGEVEDVNLVREEKTGKSKGFAFLKYEDARSCILAVDNLSGSVVLGRSLRVDHVENYRLP 116

The following BLAST results are available for this feature:

BLAST of Ggra4836.t1 vs. uniprot

BLAST of Ggra4836.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J3N6	5.660e-84	73.12	RNA-binding motif protein, X-linked 2 n=1 Tax=Grac...	[more]
R7QRZ0	1.040e-39	56.25	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
B7FS26	9.420e-37	51.72	Predicted protein (Fragment) n=1 Tax=Phaeodactylum...	[more]
A0A7S4J9N7	6.200e-35	53.45	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
K0SHL3	7.100e-35	54.31	RRM domain-containing protein n=1 Tax=Thalassiosir...	[more]
B8CCB6	7.400e-34	55.17	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A448ZMV0	1.500e-33	50.86	RRM domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
A0A1E7EVE9	1.870e-32	50.00	RRM domain-containing protein (Fragment) n=1 Tax=F...	[more]
A0A835YJH4	3.700e-32	50.85	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3VEH7	1.040e-31	49.14	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..248
None	No IPR available	COILS	Coil	Coil	coord: 133..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..214
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..254
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..254
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 1.1E-21 score: 88.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 2.0E-17 score: 62.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 17.25057
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..187 e-value: 2.0E-22 score: 81.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 24..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:248732..249505 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4836.t1	Ggra4836.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000090_pilon 248732..249505 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra4836.t1 ID=Ggra4836.t1|Name=Ggra4836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRL
LAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDGGTDTTPDGFHESQAADAEHNSEALAEEATAE
KRRQKAVMERLESLRKRKRIHSTSQAEARDSKRRELSTLEDKVEPTSARN
NALIEDTNHTTHATVSESYRREKEQRRREKEKRRQERARIRKRRAEKKAQ
QDHTSRA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf