Ggra4836.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4836.t1
Unique NameGgra4836.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:248732..249505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr9701
PFAMsRRM_1
Max annot lvl2836|Bacillariophyta
KEGG koko:K13107
Evalue2.3e-37
EggNOG OGsKOG0126@1|root,KOG0126@2759|Eukaryota,2XCM7@2836|Bacillariophyta
DescriptionPfam:RRM_6
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4836Ggra4836Gracilaria gracilis GNS1m malegenetig00000090_pilon 248732..249505 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4836.t1.stop1Ggra4836.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 248732..248734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4836.t1.CDS1Ggra4836.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 248732..249505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4836.t1.exon1Ggra4836.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 248732..249505 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4836.t1.start1Ggra4836.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 249503..249505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4836.t1Ggra4836.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 248732..249505 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4836.t1 ID=Ggra4836.t1|Name=Ggra4836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRL
LAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDGGTDTTPDGFHESQAADAEHNSEALAEEATAE
KRRQKAVMERLESLRKRKRIHSTSQAEARDSKRRELSTLEDKVEPTSARN
NALIEDTNHTTHATVSESYRREKEQRRREKEKRRQERARIRKRRAEKKAQ
QDHTSRA*
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spliced messenger RNA

>Ggra4836.t1 ID=Ggra4836.t1|Name=Ggra4836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000090_pilon:248732..249505- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGGTCAACGTCATCAACAACCTCAACCAAACTGAGCTCGAGCA
GGGAATTGCCGGCACAACTGCCTCATGGCATCACAAGTATCTCGCCTCAG
ACGCTATCTGGGTGGGTGGCTTATCGCCCTCCATCACCGAAGACCGCCTG
CTTGCCATTCTCGAGCAATACGGCACCGTGCTACACATCAATCTACTGCG
CGATGCCAACACCAGCGAATCCAAAGGCTACGCCTTTGTGCGCTACGCAG
ACTCAAGAAGTTGTGTGCTGGCGGTGGATAATTTCACCGGCTTTGAGATA
GATGGACGAAATCTCCGCGTAGATCACGTTGAGAACTATCGAATGCCCGA
AGACGGCGGCACGGATACTACACCAGACGGCTTTCATGAATCCCAAGCGG
CCGACGCCGAGCACAATTCCGAAGCGCTTGCTGAAGAGGCTACCGCTGAG
AAGCGGCGACAAAAGGCTGTCATGGAGCGATTGGAATCACTGCGAAAAAG
AAAACGTATCCACTCAACCTCACAAGCTGAAGCACGAGATTCGAAAAGAA
GAGAACTTTCAACTCTCGAAGACAAAGTTGAACCCACAAGTGCAAGAAAC
AACGCACTCATTGAGGACACCAATCACACCACACATGCAACTGTGTCTGA
GTCATATCGGAGAGAGAAAGAGCAGCGCCGTCGAGAAAAAGAGAAACGTC
GCCAGGAACGCGCGAGAATACGAAAACGGCGCGCCGAAAAGAAAGCGCAG
CAAGACCACACTTCGCGTGCTTAG
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protein sequence of Ggra4836.t1

>Ggra4836.t1 ID=Ggra4836.t1|Name=Ggra4836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MNKVNVINNLNQTELEQGIAGTTASWHHKYLASDAIWVGGLSPSITEDRL
LAILEQYGTVLHINLLRDANTSESKGYAFVRYADSRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDGGTDTTPDGFHESQAADAEHNSEALAEEATAE
KRRQKAVMERLESLRKRKRIHSTSQAEARDSKRRELSTLEDKVEPTSARN
NALIEDTNHTTHATVSESYRREKEQRRREKEKRRQERARIRKRRAEKKAQ
QDHTSRA*
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mRNA from alignment at tig00000090_pilon:248732..249505-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4836.t1 ID=Ggra4836.t1|Name=Ggra4836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000090_pilon:248732..249505- (Gracilaria gracilis GNS1m male)
ATGAACAAGGTCAACGTCATCAACAACCTCAACCAAACTGAGCTCGAGCA
GGGAATTGCCGGCACAACTGCCTCATGGCATCACAAGTATCTCGCCTCAG
ACGCTATCTGGGTGGGTGGCTTATCGCCCTCCATCACCGAAGACCGCCTG
CTTGCCATTCTCGAGCAATACGGCACCGTGCTACACATCAATCTACTGCG
CGATGCCAACACCAGCGAATCCAAAGGCTACGCCTTTGTGCGCTACGCAG
ACTCAAGAAGTTGTGTGCTGGCGGTGGATAATTTCACCGGCTTTGAGATA
GATGGACGAAATCTCCGCGTAGATCACGTTGAGAACTATCGAATGCCCGA
AGACGGCGGCACGGATACTACACCAGACGGCTTTCATGAATCCCAAGCGG
CCGACGCCGAGCACAATTCCGAAGCGCTTGCTGAAGAGGCTACCGCTGAG
AAGCGGCGACAAAAGGCTGTCATGGAGCGATTGGAATCACTGCGAAAAAG
AAAACGTATCCACTCAACCTCACAAGCTGAAGCACGAGATTCGAAAAGAA
GAGAACTTTCAACTCTCGAAGACAAAGTTGAACCCACAAGTGCAAGAAAC
AACGCACTCATTGAGGACACCAATCACACCACACATGCAACTGTGTCTGA
GTCATATCGGAGAGAGAAAGAGCAGCGCCGTCGAGAAAAAGAGAAACGTC
GCCAGGAACGCGCGAGAATACGAAAACGGCGCGCCGAAAAGAAAGCGCAG
CAAGACCACACTTCGCGTGCTTAG
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Coding sequence (CDS) from alignment at tig00000090_pilon:248732..249505-

>Ggra4836.t1 ID=Ggra4836.t1|Name=Ggra4836.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000090_pilon:248732..249505- (Gracilaria gracilis GNS1m male)
ATGAACAAGGTCAACGTCATCAACAACCTCAACCAAACTGAGCTCGAGCA
GGGAATTGCCGGCACAACTGCCTCATGGCATCACAAGTATCTCGCCTCAG
ACGCTATCTGGGTGGGTGGCTTATCGCCCTCCATCACCGAAGACCGCCTG
CTTGCCATTCTCGAGCAATACGGCACCGTGCTACACATCAATCTACTGCG
CGATGCCAACACCAGCGAATCCAAAGGCTACGCCTTTGTGCGCTACGCAG
ACTCAAGAAGTTGTGTGCTGGCGGTGGATAATTTCACCGGCTTTGAGATA
GATGGACGAAATCTCCGCGTAGATCACGTTGAGAACTATCGAATGCCCGA
AGACGGCGGCACGGATACTACACCAGACGGCTTTCATGAATCCCAAGCGG
CCGACGCCGAGCACAATTCCGAAGCGCTTGCTGAAGAGGCTACCGCTGAG
AAGCGGCGACAAAAGGCTGTCATGGAGCGATTGGAATCACTGCGAAAAAG
AAAACGTATCCACTCAACCTCACAAGCTGAAGCACGAGATTCGAAAAGAA
GAGAACTTTCAACTCTCGAAGACAAAGTTGAACCCACAAGTGCAAGAAAC
AACGCACTCATTGAGGACACCAATCACACCACACATGCAACTGTGTCTGA
GTCATATCGGAGAGAGAAAGAGCAGCGCCGTCGAGAAAAAGAGAAACGTC
GCCAGGAACGCGCGAGAATACGAAAACGGCGCGCCGAAAAGAAAGCGCAG
CAAGACCACACTTCGCGTGCTTAG
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