Ggra4883.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4883.t1
Unique NameGgra4883.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:486671..487582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4883Ggra4883Gracilaria gracilis GNS1m malegenetig00000090_pilon 486671..487582 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4883.t1.stop1Ggra4883.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 486671..486673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4883.t1.CDS1Ggra4883.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 486671..487582 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4883.t1.exon1Ggra4883.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 486671..487582 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4883.t1.start1Ggra4883.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 487580..487582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4883.t1Ggra4883.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 486671..487582 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4883.t1 ID=Ggra4883.t1|Name=Ggra4883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MSDLSVTVIVGKQRWQLSISSRHTFGQLRSLVEHNEHTVEHGLRLIYKGK
SFPDHTKLCDANVVDGAKMMALRTAKQRLEDSANAKRAKLNAPQESLADM
RQQASASNNASSSSSSSSSPGTKSAQASVHNILGDHPVEGVACVLLIHGK
LKYRFNVQMSHTVLSLKQRAAAMPAVQSQPSNMRLLFRGNFLKDDATLHQ
IGAKSGSSFMLLFNANHHDAVEDKQQISSIHDNLRQLEAKASALTSQVEH
RLLDTVDIAVKKSELQHILGRLKDNLSSVRSEDERRASMEQRLNAVEHII
SRL*
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spliced messenger RNA

>Ggra4883.t1 ID=Ggra4883.t1|Name=Ggra4883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000090_pilon:486671..487582- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACCTCAGCGTCACCGTCATAGTGGGCAAGCAACGATGGCAGCT
TTCGATCTCATCGCGCCACACCTTTGGACAGCTTCGTTCGCTGGTCGAGC
ACAACGAGCATACCGTTGAACATGGCTTGCGTCTCATCTACAAGGGAAAG
TCGTTCCCGGATCACACCAAGCTCTGCGACGCCAACGTCGTGGACGGCGC
CAAGATGATGGCGTTGCGCACTGCCAAACAACGCCTTGAGGACAGCGCGA
ACGCCAAACGCGCCAAGCTCAACGCGCCGCAAGAGTCGCTGGCGGACATG
AGGCAGCAAGCTTCTGCGAGCAACAATGCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGCCGGGCACCAAAAGCGCACAAGCGAGTGTGCACAACATTCTGG
GCGATCATCCTGTCGAAGGTGTTGCTTGCGTTTTGCTCATTCATGGCAAG
CTCAAGTATCGATTTAATGTGCAAATGTCGCATACAGTACTCAGTCTCAA
GCAGAGGGCGGCCGCAATGCCAGCCGTTCAGTCGCAGCCTTCCAACATGC
GCCTCTTGTTCAGAGGCAACTTTCTCAAAGATGACGCCACTCTGCACCAG
ATTGGCGCCAAAAGCGGCAGTTCTTTCATGCTCTTGTTCAATGCAAACCA
TCATGATGCTGTGGAAGACAAGCAACAAATCTCCTCCATTCATGATAACC
TGCGCCAGCTTGAAGCAAAGGCTAGCGCACTCACCTCTCAGGTTGAGCAT
CGCTTACTGGATACCGTTGATATTGCAGTCAAGAAAAGCGAACTGCAGCA
CATACTTGGCCGATTGAAGGATAACTTGTCCTCTGTAAGAAGCGAAGATG
AAAGGAGGGCTTCCATGGAGCAGCGGTTGAACGCCGTGGAACATATTATT
TCTCGACTTTGA
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protein sequence of Ggra4883.t1

>Ggra4883.t1 ID=Ggra4883.t1|Name=Ggra4883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MSDLSVTVIVGKQRWQLSISSRHTFGQLRSLVEHNEHTVEHGLRLIYKGK
SFPDHTKLCDANVVDGAKMMALRTAKQRLEDSANAKRAKLNAPQESLADM
RQQASASNNASSSSSSSSSPGTKSAQASVHNILGDHPVEGVACVLLIHGK
LKYRFNVQMSHTVLSLKQRAAAMPAVQSQPSNMRLLFRGNFLKDDATLHQ
IGAKSGSSFMLLFNANHHDAVEDKQQISSIHDNLRQLEAKASALTSQVEH
RLLDTVDIAVKKSELQHILGRLKDNLSSVRSEDERRASMEQRLNAVEHII
SRL*
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mRNA from alignment at tig00000090_pilon:486671..487582-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4883.t1 ID=Ggra4883.t1|Name=Ggra4883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000090_pilon:486671..487582- (Gracilaria gracilis GNS1m male)
ATGAGCGACCTCAGCGTCACCGTCATAGTGGGCAAGCAACGATGGCAGCT
TTCGATCTCATCGCGCCACACCTTTGGACAGCTTCGTTCGCTGGTCGAGC
ACAACGAGCATACCGTTGAACATGGCTTGCGTCTCATCTACAAGGGAAAG
TCGTTCCCGGATCACACCAAGCTCTGCGACGCCAACGTCGTGGACGGCGC
CAAGATGATGGCGTTGCGCACTGCCAAACAACGCCTTGAGGACAGCGCGA
ACGCCAAACGCGCCAAGCTCAACGCGCCGCAAGAGTCGCTGGCGGACATG
AGGCAGCAAGCTTCTGCGAGCAACAATGCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGCCGGGCACCAAAAGCGCACAAGCGAGTGTGCACAACATTCTGG
GCGATCATCCTGTCGAAGGTGTTGCTTGCGTTTTGCTCATTCATGGCAAG
CTCAAGTATCGATTTAATGTGCAAATGTCGCATACAGTACTCAGTCTCAA
GCAGAGGGCGGCCGCAATGCCAGCCGTTCAGTCGCAGCCTTCCAACATGC
GCCTCTTGTTCAGAGGCAACTTTCTCAAAGATGACGCCACTCTGCACCAG
ATTGGCGCCAAAAGCGGCAGTTCTTTCATGCTCTTGTTCAATGCAAACCA
TCATGATGCTGTGGAAGACAAGCAACAAATCTCCTCCATTCATGATAACC
TGCGCCAGCTTGAAGCAAAGGCTAGCGCACTCACCTCTCAGGTTGAGCAT
CGCTTACTGGATACCGTTGATATTGCAGTCAAGAAAAGCGAACTGCAGCA
CATACTTGGCCGATTGAAGGATAACTTGTCCTCTGTAAGAAGCGAAGATG
AAAGGAGGGCTTCCATGGAGCAGCGGTTGAACGCCGTGGAACATATTATT
TCTCGACTTTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:486671..487582-

>Ggra4883.t1 ID=Ggra4883.t1|Name=Ggra4883.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000090_pilon:486671..487582- (Gracilaria gracilis GNS1m male)
ATGAGCGACCTCAGCGTCACCGTCATAGTGGGCAAGCAACGATGGCAGCT
TTCGATCTCATCGCGCCACACCTTTGGACAGCTTCGTTCGCTGGTCGAGC
ACAACGAGCATACCGTTGAACATGGCTTGCGTCTCATCTACAAGGGAAAG
TCGTTCCCGGATCACACCAAGCTCTGCGACGCCAACGTCGTGGACGGCGC
CAAGATGATGGCGTTGCGCACTGCCAAACAACGCCTTGAGGACAGCGCGA
ACGCCAAACGCGCCAAGCTCAACGCGCCGCAAGAGTCGCTGGCGGACATG
AGGCAGCAAGCTTCTGCGAGCAACAATGCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGCCGGGCACCAAAAGCGCACAAGCGAGTGTGCACAACATTCTGG
GCGATCATCCTGTCGAAGGTGTTGCTTGCGTTTTGCTCATTCATGGCAAG
CTCAAGTATCGATTTAATGTGCAAATGTCGCATACAGTACTCAGTCTCAA
GCAGAGGGCGGCCGCAATGCCAGCCGTTCAGTCGCAGCCTTCCAACATGC
GCCTCTTGTTCAGAGGCAACTTTCTCAAAGATGACGCCACTCTGCACCAG
ATTGGCGCCAAAAGCGGCAGTTCTTTCATGCTCTTGTTCAATGCAAACCA
TCATGATGCTGTGGAAGACAAGCAACAAATCTCCTCCATTCATGATAACC
TGCGCCAGCTTGAAGCAAAGGCTAGCGCACTCACCTCTCAGGTTGAGCAT
CGCTTACTGGATACCGTTGATATTGCAGTCAAGAAAAGCGAACTGCAGCA
CATACTTGGCCGATTGAAGGATAACTTGTCCTCTGTAAGAAGCGAAGATG
AAAGGAGGGCTTCCATGGAGCAGCGGTTGAACGCCGTGGAACATATTATT
TCTCGACTTTGA
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