Ggra4883.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra4883.t1
Unique Name	Ggra4883.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	304

Homology

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BLAST of Ggra4883.t1 vs. uniprot
Match: A0A2V3J3W0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3W0_9FLOR)

HSP 1 Score: 281 bits (718), Expect = 1.010e-90
Identity = 157/311 (50.48%), Postives = 209/311 (67.20%), Query Frame = 0

Query:    1 MSDLSVTVIVGKQRWQLSISSRHTFGQLRSLVEHNEHTVEHGLRLIYKGKSFPDHTKLCDANVVDGAKMMALRTAKQRLEDSANAKRAKLNAPQESLADMRQQASASXXXXXXXXXXXSPGTKSAQASVH--------NILGDHPVEGVACVLLIHGKLKYRFNVQMSHTVLSLKQRAAAMPAVQSQPSNMRLLFRGNFLKDDATLHQIGAKSGSSFMLLFNANHHDAVEDKQQISSIHDNLRQLEAKASALTSQVEHRLLDTVDIAVKKSELQHILGRLKDNLSSVRSEDERRASMEQRLNAVEHIISRL 303
            MSDL++TVI GK+ W++ +SS  TFG LR+ +E  E TV  GLRLI KG+S PDH KL +  V  G+KMM +RT+KQ+ ++    KR KL +  +SL+++R Q+S              P T +  +S +         +LGD   + V  V+LI GK KYR N++M+ +V+ LKQ+AA +  + S+ SNMRLLF+G FLKD+  L + G K GSS MLLFNA HHDA +D  ++ SI   L +LEAK  ++ SQ EHRLLD+VD+AVKKSELQ I  RL+DNLSSVRSEDERRASME +L+ VE +ISRL
Sbjct:    1 MSDLTITVIAGKKGWEVKVSSDITFGDLRTQIEEKEGTVAGGLRLICKGRSHPDHLKLSEVGVSTGSKMMVMRTSKQKEQEXXXXKRTKLQSDYKSLSELRAQSSV----------ISKPSTDAGASSSNAKPVVREIGVLGDPQQDCVTSVILIQGKNKYRVNIEMTESVVVLKQKAAFIDGINSKASNMRLLFKGKFLKDECNLSEYGVKDGSSLMLLFNAKHHDAKDDFIEMGSIKKKLDELEAKTRSVASQAEHRLLDSVDLAVKKSELQDIFTRLRDNLSSVRSEDERRASMECQLDVVEELISRL 301

The following BLAST results are available for this feature:

BLAST of Ggra4883.t1 vs. uniprot

BLAST of Ggra4883.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J3W0	1.010e-90	50.48	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 220..247
None	No IPR available	GENE3D	3.10.20.90		coord: 3..72 e-value: 1.5E-10 score: 42.9
None	No IPR available	GENE3D	3.10.20.90		coord: 144..212 e-value: 3.2E-10 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..129
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 6..70 e-value: 4.23848E-5 score: 39.1166
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 144..212 e-value: 1.18347E-9 score: 51.8282
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 4..74 e-value: 1.2 score: 13.8 coord: 142..214 e-value: 8.1E-4 score: 28.7
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 152..214 e-value: 4.9E-8 score: 32.6 coord: 10..71 e-value: 1.4E-5 score: 24.7
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 155..212 score: 13.053562
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 2..72 score: 10.309861
IPR039773	Molecular chaperone regulator BAG	PANTHER	PTHR12329	BCL2-ASSOCIATED ATHANOGENE	coord: 148..257 coord: 3..112
IPR017093	Molecular chaperone regulator BAG-1	PANTHER	PTHR12329:SF16	BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1	coord: 148..257 coord: 3..112
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 4..73
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 144..215

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:486671..487582 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4883.t1	Ggra4883.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000090_pilon 486671..487582 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra4883.t1 ID=Ggra4883.t1|Name=Ggra4883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MSDLSVTVIVGKQRWQLSISSRHTFGQLRSLVEHNEHTVEHGLRLIYKGK
SFPDHTKLCDANVVDGAKMMALRTAKQRLEDSANAKRAKLNAPQESLADM
RQQASASNNASSSSSSSSSPGTKSAQASVHNILGDHPVEGVACVLLIHGK
LKYRFNVQMSHTVLSLKQRAAAMPAVQSQPSNMRLLFRGNFLKDDATLHQ
IGAKSGSSFMLLFNANHHDAVEDKQQISSIHDNLRQLEAKASALTSQVEH
RLLDTVDIAVKKSELQHILGRLKDNLSSVRSEDERRASMEQRLNAVEHII
SRL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin-like_dom
IPR039773	BAG_chaperone_regulator
IPR017093	BAG-1
IPR029071	Ubiquitin-like_domsf