Ggra4882.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4882.t1
Unique NameGgra4882.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:484982..485746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705801.1
PFAMsSBDS,SBDS_C
Max annot lvl2759|Eukaryota
KEGG koko:K14574
KEGG Pathwayko03008,map03008
Evalue2.87e-49
EggNOG OGsCOG1500@1|root,KOG2917@2759|Eukaryota
Descriptionmature ribosome assembly
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4882Ggra4882Gracilaria gracilis GNS1m malegenetig00000090_pilon 484982..485746 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4882.t1.stop1Ggra4882.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 484982..484984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4882.t1.CDS1Ggra4882.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 484982..485746 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4882.t1.exon1Ggra4882.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 484982..485746 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4882.t1.start1Ggra4882.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 485744..485746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4882.t1Ggra4882.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 484982..485746 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4882.t1 ID=Ggra4882.t1|Name=Ggra4882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MPEMLVRLKKGKKTYEVMVEEGMVAKYRDGSVKRLEDVVVTPVVFVNASK
GTKASSEQLNDSFQTDDVMQVIELILQKGEAQESAGERKSKMDAKKQEII
SAIQKNYVSPEGTPLPVMRIENALEQVRPRIDVDVDALRQVNAMHQKLSA
VMPMKKSSSGVEGTVIVPTHLAGQVSGIVRKHCTVLRETYRDKAKYDVEI
HSYEQLMSDLGRVTKGNFEFSLTTNAAAVATSSDAPAAAASSSGKKGKGK
KKRK*
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spliced messenger RNA

>Ggra4882.t1 ID=Ggra4882.t1|Name=Ggra4882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000090_pilon:484982..485746- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAAATGCTCGTGAGACTCAAGAAAGGGAAGAAGACCTACGAGGT
CATGGTCGAGGAAGGAATGGTGGCAAAGTATCGCGATGGAAGCGTGAAGC
GCTTAGAGGATGTTGTGGTCACCCCTGTCGTTTTTGTGAACGCTAGCAAA
GGCACCAAAGCTAGCAGCGAGCAGTTGAACGACTCCTTTCAGACTGATGA
CGTCATGCAAGTTATCGAGCTAATCCTGCAAAAGGGTGAAGCGCAGGAAA
GCGCTGGTGAACGAAAGTCTAAGATGGACGCGAAGAAACAAGAGATTATC
AGTGCCATTCAGAAGAACTATGTTTCTCCGGAAGGTACCCCACTGCCTGT
AATGAGGATTGAGAACGCGCTTGAACAAGTAAGGCCGAGAATCGACGTGG
ACGTGGATGCTTTGCGACAAGTGAACGCCATGCATCAGAAACTCAGTGCA
GTAATGCCAATGAAGAAAAGTAGCAGTGGTGTCGAAGGCACTGTGATCGT
GCCTACGCATTTGGCGGGACAAGTATCTGGAATAGTGCGAAAGCACTGCA
CGGTTTTGCGAGAAACATATCGGGATAAGGCCAAGTACGACGTGGAAATA
CATTCGTATGAACAGCTTATGTCCGATCTTGGGCGCGTAACAAAGGGTAA
CTTTGAATTCAGTTTGACGACAAATGCAGCCGCCGTGGCGACATCGAGCG
ACGCGCCAGCGGCTGCTGCCAGCTCTTCTGGAAAGAAGGGGAAGGGAAAG
AAGAAGAGAAAGTGA
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protein sequence of Ggra4882.t1

>Ggra4882.t1 ID=Ggra4882.t1|Name=Ggra4882.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MPEMLVRLKKGKKTYEVMVEEGMVAKYRDGSVKRLEDVVVTPVVFVNASK
GTKASSEQLNDSFQTDDVMQVIELILQKGEAQESAGERKSKMDAKKQEII
SAIQKNYVSPEGTPLPVMRIENALEQVRPRIDVDVDALRQVNAMHQKLSA
VMPMKKSSSGVEGTVIVPTHLAGQVSGIVRKHCTVLRETYRDKAKYDVEI
HSYEQLMSDLGRVTKGNFEFSLTTNAAAVATSSDAPAAAASSSGKKGKGK
KKRK*
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mRNA from alignment at tig00000090_pilon:484982..485746-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4882.t1 ID=Ggra4882.t1|Name=Ggra4882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000090_pilon:484982..485746- (Gracilaria gracilis GNS1m male)
ATGCCGGAAATGCTCGTGAGACTCAAGAAAGGGAAGAAGACCTACGAGGT
CATGGTCGAGGAAGGAATGGTGGCAAAGTATCGCGATGGAAGCGTGAAGC
GCTTAGAGGATGTTGTGGTCACCCCTGTCGTTTTTGTGAACGCTAGCAAA
GGCACCAAAGCTAGCAGCGAGCAGTTGAACGACTCCTTTCAGACTGATGA
CGTCATGCAAGTTATCGAGCTAATCCTGCAAAAGGGTGAAGCGCAGGAAA
GCGCTGGTGAACGAAAGTCTAAGATGGACGCGAAGAAACAAGAGATTATC
AGTGCCATTCAGAAGAACTATGTTTCTCCGGAAGGTACCCCACTGCCTGT
AATGAGGATTGAGAACGCGCTTGAACAAGTAAGGCCGAGAATCGACGTGG
ACGTGGATGCTTTGCGACAAGTGAACGCCATGCATCAGAAACTCAGTGCA
GTAATGCCAATGAAGAAAAGTAGCAGTGGTGTCGAAGGCACTGTGATCGT
GCCTACGCATTTGGCGGGACAAGTATCTGGAATAGTGCGAAAGCACTGCA
CGGTTTTGCGAGAAACATATCGGGATAAGGCCAAGTACGACGTGGAAATA
CATTCGTATGAACAGCTTATGTCCGATCTTGGGCGCGTAACAAAGGGTAA
CTTTGAATTCAGTTTGACGACAAATGCAGCCGCCGTGGCGACATCGAGCG
ACGCGCCAGCGGCTGCTGCCAGCTCTTCTGGAAAGAAGGGGAAGGGAAAG
AAGAAGAGAAAGTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:484982..485746-

>Ggra4882.t1 ID=Ggra4882.t1|Name=Ggra4882.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000090_pilon:484982..485746- (Gracilaria gracilis GNS1m male)
ATGCCGGAAATGCTCGTGAGACTCAAGAAAGGGAAGAAGACCTACGAGGT
CATGGTCGAGGAAGGAATGGTGGCAAAGTATCGCGATGGAAGCGTGAAGC
GCTTAGAGGATGTTGTGGTCACCCCTGTCGTTTTTGTGAACGCTAGCAAA
GGCACCAAAGCTAGCAGCGAGCAGTTGAACGACTCCTTTCAGACTGATGA
CGTCATGCAAGTTATCGAGCTAATCCTGCAAAAGGGTGAAGCGCAGGAAA
GCGCTGGTGAACGAAAGTCTAAGATGGACGCGAAGAAACAAGAGATTATC
AGTGCCATTCAGAAGAACTATGTTTCTCCGGAAGGTACCCCACTGCCTGT
AATGAGGATTGAGAACGCGCTTGAACAAGTAAGGCCGAGAATCGACGTGG
ACGTGGATGCTTTGCGACAAGTGAACGCCATGCATCAGAAACTCAGTGCA
GTAATGCCAATGAAGAAAAGTAGCAGTGGTGTCGAAGGCACTGTGATCGT
GCCTACGCATTTGGCGGGACAAGTATCTGGAATAGTGCGAAAGCACTGCA
CGGTTTTGCGAGAAACATATCGGGATAAGGCCAAGTACGACGTGGAAATA
CATTCGTATGAACAGCTTATGTCCGATCTTGGGCGCGTAACAAAGGGTAA
CTTTGAATTCAGTTTGACGACAAATGCAGCCGCCGTGGCGACATCGAGCG
ACGCGCCAGCGGCTGCTGCCAGCTCTTCTGGAAAGAAGGGGAAGGGAAAG
AAGAAGAGAAAGTGA
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