Ggra7722.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7722.t1
Unique NameGgra7722.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:153066..154568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog337075.U4L276
PFAMsCAF1
Max annot lvl4751|Fungi
KEGG koko:K01148,ko:K17427
KEGG Pathwayko03018,map03018
GOsGO:0000175,GO:0000228,GO:0000775,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008408,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0022607,GO:0031047,GO:0031048,GO:0031123,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0034401,GO:0034470,GO:0034641,GO:0034660,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0070924,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097549,GO:0098687,GO:0110008,GO:0140098,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue4.78e-14
EggNOG OGsKOG1990@1|root,KOG1990@2759|Eukaryota,38GZE@33154|Opisthokonta,3NX9X@4751|Fungi,3QSJS@4890|Ascomycota
EC3.1.13.4
DescriptionCAF1 family ribonuclease
COG categoryL
BRITEbr01610,ko00000,ko00001,ko01000,ko03011,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7722Ggra7722Gracilaria gracilis GNS1m malegenetig00000088_pilon 153066..154568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7722.t1.start1Ggra7722.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 153066..153068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7722.t1.CDS1Ggra7722.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 153066..154568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7722.t1.exon1Ggra7722.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 153066..154568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7722.t1.stop1Ggra7722.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 154566..154568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7722.t1Ggra7722.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 153066..154568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7722.t1 ID=Ggra7722.t1|Name=Ggra7722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MQASTVMFLIEHGFDFQKSFRNGVTWLREDQEKKFFNFVQDDLRVRRART
CDLDKLNAEEGMLLKEWTENIEQWFEALKEQNNECEGGDAKPKIRSFLLP
STPWMRKIICDLVRTRYPQLAAQTIPTQNGNKMLKLSLHSSEQAAKVHYE
KALEKDAHDITFRETMFRYVVDELRVHKKPIVVHNGSMDLIKLYANFIEE
LPSDLISFKKGLGRHFPVVYDTKRMVDKLCIQDEEVRRGMIKTRGVSEIL
GMLRKVTKKRNLKVGIKAFIPQDNHDEGFAGDGIVRGADFKGFATSANSD
EVRERDLFGFGRYLSQDIEHEAGYDALETGVLFTYLDILGEHTPNELSLG
FCGGFKFISISSDKDEENSWFDLPVIVVKGIVNATVANEEQPKGRGKEKF
THTIEVITKDTKFRAEQTDVMVASKDICIAMLNMKSVGKRKREDGGEQNG
GTDKMDGASLHEQVDLVIENGKRHGVEVMRYSREVLGKDWQWMSRTRMFA
*
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spliced messenger RNA

>Ggra7722.t1 ID=Ggra7722.t1|Name=Ggra7722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000088_pilon:153066..154568+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCGTCTACTGTTATGTTTCTGATCGAGCATGGCTTTGATTTTCA
AAAATCGTTTAGGAACGGTGTAACATGGTTGCGAGAAGACCAAGAAAAGA
AGTTCTTCAACTTCGTCCAGGATGACTTGCGCGTGAGGAGAGCGAGAACA
TGTGATTTGGACAAGTTGAACGCAGAAGAAGGTATGCTATTGAAGGAATG
GACCGAGAACATCGAACAGTGGTTCGAGGCTTTGAAGGAGCAGAACAATG
AATGTGAAGGGGGCGATGCAAAGCCAAAGATCCGATCATTTTTGCTCCCG
TCAACGCCATGGATGAGGAAAATCATATGTGATCTAGTGCGAACGCGGTA
CCCTCAACTTGCTGCCCAAACTATTCCAACACAGAATGGCAACAAGATGT
TGAAGTTGTCTCTGCACTCATCTGAGCAAGCAGCAAAGGTACACTACGAA
AAGGCACTGGAAAAAGATGCTCATGACATTACCTTCAGGGAAACCATGTT
TCGATATGTTGTGGACGAGTTACGAGTTCACAAGAAACCAATCGTTGTAC
ACAATGGCTCAATGGATCTAATCAAACTATATGCTAACTTTATTGAAGAG
CTTCCGTCGGACTTAATCAGTTTTAAAAAAGGGCTAGGCAGGCACTTTCC
TGTGGTGTATGATACAAAACGTATGGTGGACAAATTGTGCATACAAGATG
AAGAAGTGAGGAGAGGAATGATCAAAACACGCGGCGTGTCCGAAATCTTA
GGGATGCTACGGAAAGTGACAAAGAAGAGAAACCTCAAAGTTGGGATAAA
GGCATTTATCCCTCAAGACAACCACGATGAAGGGTTCGCAGGGGACGGTA
TTGTGCGTGGGGCGGATTTCAAGGGCTTTGCGACGAGCGCAAACAGTGAC
GAAGTACGAGAACGAGACTTGTTTGGGTTTGGAAGATATCTGAGTCAAGA
CATTGAACACGAGGCTGGATACGATGCTCTGGAAACTGGGGTATTGTTCA
CATACCTTGATATACTGGGGGAACATACGCCGAACGAGCTATCTTTAGGC
TTTTGTGGAGGATTCAAATTTATCAGTATTAGCAGTGATAAAGACGAAGA
GAATTCATGGTTTGATCTGCCTGTAATTGTCGTGAAGGGCATAGTGAATG
CGACAGTAGCAAATGAAGAACAACCAAAAGGACGTGGGAAAGAAAAATTC
ACTCATACAATAGAGGTTATCACGAAAGATACGAAATTCCGGGCTGAACA
AACTGACGTTATGGTAGCTAGTAAAGACATTTGTATTGCTATGCTGAATA
TGAAGAGTGTTGGAAAACGAAAACGGGAAGACGGCGGTGAACAGAATGGG
GGCACAGACAAGATGGATGGTGCATCGCTACATGAACAAGTCGATTTGGT
AATCGAGAACGGGAAAAGGCATGGTGTCGAAGTGATGCGATATTCGAGAG
AAGTTTTGGGAAAGGACTGGCAGTGGATGTCAAGAACGCGAATGTTCGCA
TGA
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protein sequence of Ggra7722.t1

>Ggra7722.t1 ID=Ggra7722.t1|Name=Ggra7722.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MQASTVMFLIEHGFDFQKSFRNGVTWLREDQEKKFFNFVQDDLRVRRART
CDLDKLNAEEGMLLKEWTENIEQWFEALKEQNNECEGGDAKPKIRSFLLP
STPWMRKIICDLVRTRYPQLAAQTIPTQNGNKMLKLSLHSSEQAAKVHYE
KALEKDAHDITFRETMFRYVVDELRVHKKPIVVHNGSMDLIKLYANFIEE
LPSDLISFKKGLGRHFPVVYDTKRMVDKLCIQDEEVRRGMIKTRGVSEIL
GMLRKVTKKRNLKVGIKAFIPQDNHDEGFAGDGIVRGADFKGFATSANSD
EVRERDLFGFGRYLSQDIEHEAGYDALETGVLFTYLDILGEHTPNELSLG
FCGGFKFISISSDKDEENSWFDLPVIVVKGIVNATVANEEQPKGRGKEKF
THTIEVITKDTKFRAEQTDVMVASKDICIAMLNMKSVGKRKREDGGEQNG
GTDKMDGASLHEQVDLVIENGKRHGVEVMRYSREVLGKDWQWMSRTRMFA
*
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mRNA from alignment at tig00000088_pilon:153066..154568+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7722.t1 ID=Ggra7722.t1|Name=Ggra7722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000088_pilon:153066..154568+ (Gracilaria gracilis GNS1m male)
ATGCAGGCGTCTACTGTTATGTTTCTGATCGAGCATGGCTTTGATTTTCA
AAAATCGTTTAGGAACGGTGTAACATGGTTGCGAGAAGACCAAGAAAAGA
AGTTCTTCAACTTCGTCCAGGATGACTTGCGCGTGAGGAGAGCGAGAACA
TGTGATTTGGACAAGTTGAACGCAGAAGAAGGTATGCTATTGAAGGAATG
GACCGAGAACATCGAACAGTGGTTCGAGGCTTTGAAGGAGCAGAACAATG
AATGTGAAGGGGGCGATGCAAAGCCAAAGATCCGATCATTTTTGCTCCCG
TCAACGCCATGGATGAGGAAAATCATATGTGATCTAGTGCGAACGCGGTA
CCCTCAACTTGCTGCCCAAACTATTCCAACACAGAATGGCAACAAGATGT
TGAAGTTGTCTCTGCACTCATCTGAGCAAGCAGCAAAGGTACACTACGAA
AAGGCACTGGAAAAAGATGCTCATGACATTACCTTCAGGGAAACCATGTT
TCGATATGTTGTGGACGAGTTACGAGTTCACAAGAAACCAATCGTTGTAC
ACAATGGCTCAATGGATCTAATCAAACTATATGCTAACTTTATTGAAGAG
CTTCCGTCGGACTTAATCAGTTTTAAAAAAGGGCTAGGCAGGCACTTTCC
TGTGGTGTATGATACAAAACGTATGGTGGACAAATTGTGCATACAAGATG
AAGAAGTGAGGAGAGGAATGATCAAAACACGCGGCGTGTCCGAAATCTTA
GGGATGCTACGGAAAGTGACAAAGAAGAGAAACCTCAAAGTTGGGATAAA
GGCATTTATCCCTCAAGACAACCACGATGAAGGGTTCGCAGGGGACGGTA
TTGTGCGTGGGGCGGATTTCAAGGGCTTTGCGACGAGCGCAAACAGTGAC
GAAGTACGAGAACGAGACTTGTTTGGGTTTGGAAGATATCTGAGTCAAGA
CATTGAACACGAGGCTGGATACGATGCTCTGGAAACTGGGGTATTGTTCA
CATACCTTGATATACTGGGGGAACATACGCCGAACGAGCTATCTTTAGGC
TTTTGTGGAGGATTCAAATTTATCAGTATTAGCAGTGATAAAGACGAAGA
GAATTCATGGTTTGATCTGCCTGTAATTGTCGTGAAGGGCATAGTGAATG
CGACAGTAGCAAATGAAGAACAACCAAAAGGACGTGGGAAAGAAAAATTC
ACTCATACAATAGAGGTTATCACGAAAGATACGAAATTCCGGGCTGAACA
AACTGACGTTATGGTAGCTAGTAAAGACATTTGTATTGCTATGCTGAATA
TGAAGAGTGTTGGAAAACGAAAACGGGAAGACGGCGGTGAACAGAATGGG
GGCACAGACAAGATGGATGGTGCATCGCTACATGAACAAGTCGATTTGGT
AATCGAGAACGGGAAAAGGCATGGTGTCGAAGTGATGCGATATTCGAGAG
AAGTTTTGGGAAAGGACTGGCAGTGGATGTCAAGAACGCGAATGTTCGCA
TGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:153066..154568+

>Ggra7722.t1 ID=Ggra7722.t1|Name=Ggra7722.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000088_pilon:153066..154568+ (Gracilaria gracilis GNS1m male)
ATGCAGGCGTCTACTGTTATGTTTCTGATCGAGCATGGCTTTGATTTTCA
AAAATCGTTTAGGAACGGTGTAACATGGTTGCGAGAAGACCAAGAAAAGA
AGTTCTTCAACTTCGTCCAGGATGACTTGCGCGTGAGGAGAGCGAGAACA
TGTGATTTGGACAAGTTGAACGCAGAAGAAGGTATGCTATTGAAGGAATG
GACCGAGAACATCGAACAGTGGTTCGAGGCTTTGAAGGAGCAGAACAATG
AATGTGAAGGGGGCGATGCAAAGCCAAAGATCCGATCATTTTTGCTCCCG
TCAACGCCATGGATGAGGAAAATCATATGTGATCTAGTGCGAACGCGGTA
CCCTCAACTTGCTGCCCAAACTATTCCAACACAGAATGGCAACAAGATGT
TGAAGTTGTCTCTGCACTCATCTGAGCAAGCAGCAAAGGTACACTACGAA
AAGGCACTGGAAAAAGATGCTCATGACATTACCTTCAGGGAAACCATGTT
TCGATATGTTGTGGACGAGTTACGAGTTCACAAGAAACCAATCGTTGTAC
ACAATGGCTCAATGGATCTAATCAAACTATATGCTAACTTTATTGAAGAG
CTTCCGTCGGACTTAATCAGTTTTAAAAAAGGGCTAGGCAGGCACTTTCC
TGTGGTGTATGATACAAAACGTATGGTGGACAAATTGTGCATACAAGATG
AAGAAGTGAGGAGAGGAATGATCAAAACACGCGGCGTGTCCGAAATCTTA
GGGATGCTACGGAAAGTGACAAAGAAGAGAAACCTCAAAGTTGGGATAAA
GGCATTTATCCCTCAAGACAACCACGATGAAGGGTTCGCAGGGGACGGTA
TTGTGCGTGGGGCGGATTTCAAGGGCTTTGCGACGAGCGCAAACAGTGAC
GAAGTACGAGAACGAGACTTGTTTGGGTTTGGAAGATATCTGAGTCAAGA
CATTGAACACGAGGCTGGATACGATGCTCTGGAAACTGGGGTATTGTTCA
CATACCTTGATATACTGGGGGAACATACGCCGAACGAGCTATCTTTAGGC
TTTTGTGGAGGATTCAAATTTATCAGTATTAGCAGTGATAAAGACGAAGA
GAATTCATGGTTTGATCTGCCTGTAATTGTCGTGAAGGGCATAGTGAATG
CGACAGTAGCAAATGAAGAACAACCAAAAGGACGTGGGAAAGAAAAATTC
ACTCATACAATAGAGGTTATCACGAAAGATACGAAATTCCGGGCTGAACA
AACTGACGTTATGGTAGCTAGTAAAGACATTTGTATTGCTATGCTGAATA
TGAAGAGTGTTGGAAAACGAAAACGGGAAGACGGCGGTGAACAGAATGGG
GGCACAGACAAGATGGATGGTGCATCGCTACATGAACAAGTCGATTTGGT
AATCGAGAACGGGAAAAGGCATGGTGTCGAAGTGATGCGATATTCGAGAG
AAGTTTTGGGAAAGGACTGGCAGTGGATGTCAAGAACGCGAATGTTCGCA
TGA
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