Ggra7714.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7714.t1
Unique NameGgra7714.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:130834..132281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708863.1
Preferred nameTIF1
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K03257
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
GOsGO:0000122,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003743,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009505,GO:0009506,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016070,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030054,GO:0030312,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042221,GO:0042623,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046686,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051252,GO:0051253,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue5.22e-217
EggNOG OGsCOG0513@1|root,KOG0327@2759|Eukaryota
Descriptionhelicase activity
COG categoryJKL
BRITEko00000,ko00001,ko00002,ko03012,ko03019,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7714Ggra7714Gracilaria gracilis GNS1m malegenetig00000088_pilon 130834..132281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7714.t1Ggra7714.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 130834..132281 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7714.t1.start1Ggra7714.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 130834..130836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7714.t1.CDS1Ggra7714.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 130834..130844 +
Ggra7714.t1.CDS2Ggra7714.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 131009..132281 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7714.t1.exon1Ggra7714.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 130834..130844 +
Ggra7714.t1.exon2Ggra7714.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 131009..132281 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7714.t1.intron1Ggra7714.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 130845..131008 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7714.t1.stop1Ggra7714.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 132279..132281 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7714.t1 ID=Ggra7714.t1|Name=Ggra7714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MADSNGYTAAPPAEEPAQPTADATPANPPANEQMGVVDEGNGELTTNYTE
KHETFDDMNLRDELLRGIYAYGFEKPSAIQQRAIIPMILGRDTIAQAQSG
MGKTATFVIGILQNIDTSVRKVQALILAPTRELAQQIQKVVCALGDYMGL
HCHICIGGTLVNDDIRIFQNDTPHVVVGTPGRVYDMIQRRALGTTSIKTF
CLDEADEMLSRGFKEQIYDVFQFMPSSCQVGLFSATMPTDVLEMTQKFMR
DPLRILVKKDELTLEGIKQFYIAVEKEEWKFETLCDLYETVTITQAIIYT
NTRRKVEWLTEKLAERDFTVSMLHGDMEQKDRDVIMQEFRTGSSRVLVTT
DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTNA
DVGPLRELEQFYNTTIEEMPMNIADLI*
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spliced messenger RNA

>Ggra7714.t1 ID=Ggra7714.t1|Name=Ggra7714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000088_pilon:130834..132281+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACAGTAATGGATATACCGCCGCTCCTCCTGCCGAGGAACCCGC
CCAGCCCACCGCTGATGCAACTCCCGCAAATCCTCCCGCTAATGAGCAAA
TGGGTGTCGTCGACGAGGGTAACGGGGAGCTCACCACCAACTACACCGAG
AAGCACGAGACCTTCGATGACATGAACCTTCGCGACGAGCTTCTGCGAGG
TATCTATGCATATGGTTTCGAGAAGCCCTCTGCTATTCAACAAAGAGCTA
TCATTCCCATGATCCTTGGGAGAGACACCATTGCACAGGCTCAATCTGGA
ATGGGAAAGACAGCTACTTTTGTTATTGGCATCTTGCAGAACATTGACAC
CTCGGTGAGAAAGGTGCAGGCCCTGATTCTTGCCCCGACTCGTGAGCTGG
CGCAGCAGATCCAAAAGGTCGTCTGCGCTCTGGGTGACTACATGGGTCTT
CATTGTCATATTTGCATCGGTGGTACTTTAGTTAACGATGACATCAGAAT
CTTTCAGAACGACACCCCACATGTCGTCGTCGGTACCCCTGGTCGTGTGT
ATGACATGATCCAACGCCGTGCTCTGGGCACCACCTCTATCAAGACTTTC
TGTCTCGATGAAGCTGACGAGATGCTTTCTCGTGGGTTCAAGGAACAGAT
CTATGACGTTTTCCAGTTCATGCCTTCGTCGTGCCAGGTGGGTCTGTTCT
CCGCCACCATGCCCACCGACGTACTTGAAATGACTCAGAAGTTCATGCGT
GATCCGCTCAGAATCCTCGTGAAGAAGGATGAGCTTACACTCGAAGGTAT
CAAACAGTTCTACATCGCCGTCGAGAAAGAGGAATGGAAGTTTGAGACAT
TGTGCGATTTGTATGAGACTGTGACCATCACCCAGGCTATCATTTACACC
AACACGCGACGCAAGGTGGAATGGCTGACAGAGAAGCTTGCGGAACGTGA
CTTCACTGTGTCCATGTTGCACGGTGATATGGAGCAGAAGGACCGCGATG
TGATTATGCAGGAGTTCAGGACTGGATCCTCTCGTGTGCTGGTTACGACT
GACCTTTTGGCGCGTGGTATTGATGTGCAGCAGGTTTCGCTCGTAATCAA
CTACGATCTTCCTACGAACCGTGAAAATTACATCCATCGTATCGGTCGTT
CTGGGCGTTTCGGTCGTAAGGGTGTTGCCATCAATTTCCTGACTAACGCT
GATGTTGGACCACTTCGTGAGCTCGAACAGTTCTATAACACGACAATTGA
AGAGATGCCAATGAACATTGCTGACTTGATCTAA
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protein sequence of Ggra7714.t1

>Ggra7714.t1 ID=Ggra7714.t1|Name=Ggra7714.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MADSNGYTAAPPAEEPAQPTADATPANPPANEQMGVVDEGNGELTTNYTE
KHETFDDMNLRDELLRGIYAYGFEKPSAIQQRAIIPMILGRDTIAQAQSG
MGKTATFVIGILQNIDTSVRKVQALILAPTRELAQQIQKVVCALGDYMGL
HCHICIGGTLVNDDIRIFQNDTPHVVVGTPGRVYDMIQRRALGTTSIKTF
CLDEADEMLSRGFKEQIYDVFQFMPSSCQVGLFSATMPTDVLEMTQKFMR
DPLRILVKKDELTLEGIKQFYIAVEKEEWKFETLCDLYETVTITQAIIYT
NTRRKVEWLTEKLAERDFTVSMLHGDMEQKDRDVIMQEFRTGSSRVLVTT
DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTNA
DVGPLRELEQFYNTTIEEMPMNIADLI*
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mRNA from alignment at tig00000088_pilon:130834..132281+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7714.t1 ID=Ggra7714.t1|Name=Ggra7714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1448bp|location=Sequence derived from alignment at tig00000088_pilon:130834..132281+ (Gracilaria gracilis GNS1m male)
ATGGCTGACAGGTGAGTTTCCCATCTTCTTGTCCCACAAACGCGTGATCC
ACCAGCGGTGCTTTGCGCGCTTGTCTCGTTGCTCGCTTCTTCGTCACTCG
AATTTGTTCCCCCAAACTAATCTTTGATTGCGTTCTGCTTCCTCCTTTCC
GCACAACTCTCGTCTTGTTAAACAGTAATGGATATACCGCCGCTCCTCCT
GCCGAGGAACCCGCCCAGCCCACCGCTGATGCAACTCCCGCAAATCCTCC
CGCTAATGAGCAAATGGGTGTCGTCGACGAGGGTAACGGGGAGCTCACCA
CCAACTACACCGAGAAGCACGAGACCTTCGATGACATGAACCTTCGCGAC
GAGCTTCTGCGAGGTATCTATGCATATGGTTTCGAGAAGCCCTCTGCTAT
TCAACAAAGAGCTATCATTCCCATGATCCTTGGGAGAGACACCATTGCAC
AGGCTCAATCTGGAATGGGAAAGACAGCTACTTTTGTTATTGGCATCTTG
CAGAACATTGACACCTCGGTGAGAAAGGTGCAGGCCCTGATTCTTGCCCC
GACTCGTGAGCTGGCGCAGCAGATCCAAAAGGTCGTCTGCGCTCTGGGTG
ACTACATGGGTCTTCATTGTCATATTTGCATCGGTGGTACTTTAGTTAAC
GATGACATCAGAATCTTTCAGAACGACACCCCACATGTCGTCGTCGGTAC
CCCTGGTCGTGTGTATGACATGATCCAACGCCGTGCTCTGGGCACCACCT
CTATCAAGACTTTCTGTCTCGATGAAGCTGACGAGATGCTTTCTCGTGGG
TTCAAGGAACAGATCTATGACGTTTTCCAGTTCATGCCTTCGTCGTGCCA
GGTGGGTCTGTTCTCCGCCACCATGCCCACCGACGTACTTGAAATGACTC
AGAAGTTCATGCGTGATCCGCTCAGAATCCTCGTGAAGAAGGATGAGCTT
ACACTCGAAGGTATCAAACAGTTCTACATCGCCGTCGAGAAAGAGGAATG
GAAGTTTGAGACATTGTGCGATTTGTATGAGACTGTGACCATCACCCAGG
CTATCATTTACACCAACACGCGACGCAAGGTGGAATGGCTGACAGAGAAG
CTTGCGGAACGTGACTTCACTGTGTCCATGTTGCACGGTGATATGGAGCA
GAAGGACCGCGATGTGATTATGCAGGAGTTCAGGACTGGATCCTCTCGTG
TGCTGGTTACGACTGACCTTTTGGCGCGTGGTATTGATGTGCAGCAGGTT
TCGCTCGTAATCAACTACGATCTTCCTACGAACCGTGAAAATTACATCCA
TCGTATCGGTCGTTCTGGGCGTTTCGGTCGTAAGGGTGTTGCCATCAATT
TCCTGACTAACGCTGATGTTGGACCACTTCGTGAGCTCGAACAGTTCTAT
AACACGACAATTGAAGAGATGCCAATGAACATTGCTGACTTGATCTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:130834..132281+

>Ggra7714.t1 ID=Ggra7714.t1|Name=Ggra7714.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000088_pilon:130834..132281+ (Gracilaria gracilis GNS1m male)
ATGGCTGACAGTAATGGATATACCGCCGCTCCTCCTGCCGAGGAACCCGC
CCAGCCCACCGCTGATGCAACTCCCGCAAATCCTCCCGCTAATGAGCAAA
TGGGTGTCGTCGACGAGGGTAACGGGGAGCTCACCACCAACTACACCGAG
AAGCACGAGACCTTCGATGACATGAACCTTCGCGACGAGCTTCTGCGAGG
TATCTATGCATATGGTTTCGAGAAGCCCTCTGCTATTCAACAAAGAGCTA
TCATTCCCATGATCCTTGGGAGAGACACCATTGCACAGGCTCAATCTGGA
ATGGGAAAGACAGCTACTTTTGTTATTGGCATCTTGCAGAACATTGACAC
CTCGGTGAGAAAGGTGCAGGCCCTGATTCTTGCCCCGACTCGTGAGCTGG
CGCAGCAGATCCAAAAGGTCGTCTGCGCTCTGGGTGACTACATGGGTCTT
CATTGTCATATTTGCATCGGTGGTACTTTAGTTAACGATGACATCAGAAT
CTTTCAGAACGACACCCCACATGTCGTCGTCGGTACCCCTGGTCGTGTGT
ATGACATGATCCAACGCCGTGCTCTGGGCACCACCTCTATCAAGACTTTC
TGTCTCGATGAAGCTGACGAGATGCTTTCTCGTGGGTTCAAGGAACAGAT
CTATGACGTTTTCCAGTTCATGCCTTCGTCGTGCCAGGTGGGTCTGTTCT
CCGCCACCATGCCCACCGACGTACTTGAAATGACTCAGAAGTTCATGCGT
GATCCGCTCAGAATCCTCGTGAAGAAGGATGAGCTTACACTCGAAGGTAT
CAAACAGTTCTACATCGCCGTCGAGAAAGAGGAATGGAAGTTTGAGACAT
TGTGCGATTTGTATGAGACTGTGACCATCACCCAGGCTATCATTTACACC
AACACGCGACGCAAGGTGGAATGGCTGACAGAGAAGCTTGCGGAACGTGA
CTTCACTGTGTCCATGTTGCACGGTGATATGGAGCAGAAGGACCGCGATG
TGATTATGCAGGAGTTCAGGACTGGATCCTCTCGTGTGCTGGTTACGACT
GACCTTTTGGCGCGTGGTATTGATGTGCAGCAGGTTTCGCTCGTAATCAA
CTACGATCTTCCTACGAACCGTGAAAATTACATCCATCGTATCGGTCGTT
CTGGGCGTTTCGGTCGTAAGGGTGTTGCCATCAATTTCCTGACTAACGCT
GATGTTGGACCACTTCGTGAGCTCGAACAGTTCTATAACACGACAATTGA
AGAGATGCCAATGAACATTGCTGACTTGATCTAA
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